Clone Information

BLAST Search Result

Clone Name	rbags12j21
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_185280.1\| Oryza sativa (japonica cultivar-group), predic...	216	5e-53
2	dbj\|AK103944.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	216	5e-53
3	dbj\|AK098931.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	216	5e-53
4	dbj\|AK062024.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	216	5e-53
5	dbj\|AK099341.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	198	1e-47
6	gb\|BT016699.1\| Zea mays clone Contig532 mRNA sequence	137	4e-29
7	gb\|AY739289.1\| Zea mays protein disulfide isomerase (PDIL2-2) mR...	137	4e-29
8	gb\|AC087551.3\| Oryza sativa (japonica cultivar-group) chromosome...	109	8e-21
9	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	109	8e-21
10	gb\|AC087425.2\| Oryza sativa (japonica cultivar-group) chromosome...	109	8e-21
11	ref\|NM_183927.1\| Oryza sativa (japonica cultivar-group), predic...	84	5e-13
12	dbj\|AK066111.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	84	5e-13
13	gb\|AY739288.1\| Zea mays protein disulfide isomerase (PDIL2-1) mR...	56	1e-04
14	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	48	0.027
15	dbj\|AP003331.3\| Oryza sativa (japonica cultivar-group) genomic D...	48	0.027
16	gb\|AC010853.11\| Homo sapiens chromosome 18, clone RP11-349D12, c...	42	1.6
17	gb\|AC154118.6\| Mus musculus chromosome 19, clone RP24-340C10, co...	42	1.6
18	gb\|AC142293.2\| Homo sapiens fosmid clone XXFOS-8806F2 from 4, co...	42	1.6
19	emb\|AL606976.25\| Mouse DNA sequence from clone RP23-113P22 on ch...	42	1.6
20	gb\|AC163281.3\| Mus musculus BAC clone RP23-443B19 from chromosom...	40	6.5
21	ref\|XM_477491.1\| Oryza sativa (japonica cultivar-group), mRNA	40	6.5
22	gb\|AC121116.7\| Mus musculus chromosome 8, clone RP23-267D22, com...	40	6.5
23	gb\|DP000012.1\| Macropus eugenii target 1 genomic scaffold	40	6.5
24	gb\|AC183546.3\| Pan troglodytes BAC clone CH251-245P24 from chrom...	40	6.5
25	gb\|BC043952.1\| Xenopus laevis similar to chromosome 20 open read...	40	6.5
26	gb\|AC122936.3\| Mus musculus BAC clone RP23-20H6 from 5, complete...	40	6.5
27	gb\|AC122830.4\| Mus musculus BAC clone RP23-224I23 from 8, comple...	40	6.5
28	gb\|AC116323.6\| Mus musculus BAC clone RP23-281F3 from 8, complet...	40	6.5
29	gb\|AC005236.4\| Homo sapiens BAC clone RP11-479C13 from 7, comple...	40	6.5
30	gb\|AC004594.2\| Homo sapiens PAC clone RP5-1101C3 from 7, complet...	40	6.5
31	gb\|AC130652.27\| Medicago truncatula clone mth1-1k12, complete se...	40	6.5
32	gb\|AC108436.5\| Mus musculus chromosome 8, clone RP23-230G11, com...	40	6.5
33	emb\|AL953860.3\| Human DNA sequence from clone RP5-1107B12 on chr...	40	6.5
34	emb\|AL035661.16\|HS568C11 Human DNA sequence from clone RP4-568C1...	40	6.5
35	emb\|AL034402.9\|HS30G7 Human DNA sequence from clone RP1-30G7 on ...	40	6.5
36	gb\|AC173999.3\| Pan troglodytes BAC clone CH251-530E14 from chrom...	40	6.5
37	dbj\|AK127865.1\| Homo sapiens cDNA FLJ45968 fis, clone PLACE7016321	40	6.5
38	gb\|AC025028.21\| Homo sapiens 3 BAC RP11-238M12 (Roswell Park Can...	40	6.5
39	gb\|AC090096.5\| Homo sapiens chromosome 8, clone RP11-159C14, com...	40	6.5
40	gb\|AC079920.6\| Homo sapiens BAC clone RP11-325K1 from 7, complet...	40	6.5
41	gb\|AC008569.7\| Homo sapiens chromosome 19 clone CTC-548K16, comp...	40	6.5
42	dbj\|AK052063.1\| Mus musculus 12 days embryo eyeball cDNA, RIKEN ...	40	6.5
43	gb\|AC024941.30\|AC024941 Homo sapiens 12 BAC RP11-900F13 (Roswell...	40	6.5
44	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.5
45	gb\|AC074087.4\| Homo sapiens BAC clone RP11-26C10 from 4, complet...	40	6.5
46	gb\|AC108938.3\| Homo sapiens BAC clone RP11-701A10 from 2, comple...	40	6.5
47	gb\|AC010095.6\| Homo sapiens BAC clone RP11-348G16 from 2, comple...	40	6.5
48	gb\|AC013271.4\| Homo sapiens BAC clone RP11-385J6 from 2, complet...	40	6.5
49	gb\|AC007546.6\| Homo sapiens 12 BAC RP11-946P6 (Roswell Park Canc...	40	6.5
50	dbj\|AP005100.4\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.5
51	dbj\|AP005766.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.5
52	dbj\|BS000052.1\| Pan troglodytes chromosome 22 clone:RP43-049N07,...	40	6.5
53	emb\|AL671865.11\| Mouse DNA sequence from clone RP23-312B13 on ch...	40	6.5
54	emb\|AJ277755.1\|LPN277755 Legionella pneumophila serogroup 1, 30 ...	40	6.5
55	gb\|AC145183.3\| Macropus eugenii clone ME_KBa-60J17, complete seq...	40	6.5
56	emb\|AL442163.5\|CNS07ECT Human chromosome 14 DNA sequence BAC R-9...	40	6.5
57	emb\|AL162191.6\|CNS01RHQ Human chromosome 14 DNA sequence BAC R-3...	40	6.5
58	dbj\|AP001676.1\| Homo sapiens genomic DNA, chromosome 21q, sectio...	40	6.5
59	dbj\|AP006248.1\| Homo sapiens genomic DNA, chromosome 8, clone:RP...	40	6.5
60	gb\|AC164652.3\| Ornithorhynchus anatinus BAC clone OABb-566A1 fro...	40	6.5
61	gb\|AC125102.4\| Mus musculus BAC clone RP24-208N22 from 6, comple...	40	6.5
62	gb\|AC134838.4\| Mus musculus BAC clone RP24-350C10 from 8, comple...	40	6.5
63	emb\|AL954857.10\| Zebrafish DNA sequence from clone DKEY-216D12 i...	40	6.5
64	gb\|AC161507.2\| Mus musculus chromosome 5, clone RP23-76L18, comp...	40	6.5
65	emb\|AL844882.9\| Mouse DNA sequence from clone RP23-360H15 on chr...	40	6.5
66	emb\|AL450442.2\|CNS07EEY Human chromosome 14 DNA sequence BAC R-2...	40	6.5
67	emb\|AL137065.10\| Human DNA sequence from clone RP11-4P13 on chro...	40	6.5
68	dbj\|AP000403.1\| Homo sapiens genomic DNA, chromosome 21q21.2, LL...	40	6.5
69	dbj\|AB020863.1\| Homo sapiens genomic DNA of 8p21.3-p22 anti-onco...	40	6.5

>ref|NM_185280.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1101

 Score =  216 bits (109), Expect = 5e-53
 Identities = 171/192 (89%)
 Strand = Plus / Minus

                                                                        
Query: 281  ttaagaggagaaagctgaaagaatgttcttcttgatggcgaattcatcggctttggaagg 340
            ||||||||||||||  ||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 1101 ttaagaggagaaagtcgaaaggatgttcttcttgatgacgaattcatcggctttggaagg 1042

                                                                        
Query: 341  actgatcgacttctccaacaagcgatggagcctctcagtttccttctttgtatagtcaga 400
            |||||||||||||||||||| ||| || |||||||||| ||||||||| || || |||||
Sbjct: 1041 actgatcgacttctccaacatgcgttgaagcctctcagattccttcttagtgtattcaga 982

                                                                        
Query: 401  gcccttctgcaatatcttctttgcaacgttcacatanatctttccgtgcttgacagcagg 460
            |||||||| ||  ||||||||||||  ||||||||| |||||||||| |||| |||||||
Sbjct: 981  gcccttctccatgatcttctttgcagagttcacatagatctttccgtacttggcagcagg 922

                        
Query: 461  accactgagctt 472
             ||| |||||||
Sbjct: 921  gccagtgagctt 910

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>dbj|AK103944.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-014-A01, full
            insert sequence
          Length = 1431

 Score =  216 bits (109), Expect = 5e-53
 Identities = 171/192 (89%)
 Strand = Plus / Minus

                                                                        
Query: 281  ttaagaggagaaagctgaaagaatgttcttcttgatggcgaattcatcggctttggaagg 340
            ||||||||||||||  ||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 1115 ttaagaggagaaagtcgaaaggatgttcttcttgatgacgaattcatcggctttggaagg 1056

                                                                        
Query: 341  actgatcgacttctccaacaagcgatggagcctctcagtttccttctttgtatagtcaga 400
            |||||||||||||||||||| ||| || |||||||||| ||||||||| || || |||||
Sbjct: 1055 actgatcgacttctccaacatgcgttgaagcctctcagattccttcttagtgtattcaga 996

                                                                        
Query: 401  gcccttctgcaatatcttctttgcaacgttcacatanatctttccgtgcttgacagcagg 460
            |||||||| ||  ||||||||||||  ||||||||| |||||||||| |||| |||||||
Sbjct: 995  gcccttctccatgatcttctttgcagagttcacatagatctttccgtacttggcagcagg 936

                        
Query: 461  accactgagctt 472
             ||| |||||||
Sbjct: 935  gccagtgagctt 924

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>dbj|AK098931.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013023F18, full
            insert sequence
          Length = 1522

 Score =  216 bits (109), Expect = 5e-53
 Identities = 171/192 (89%)
 Strand = Plus / Minus

                                                                        
Query: 281  ttaagaggagaaagctgaaagaatgttcttcttgatggcgaattcatcggctttggaagg 340
            ||||||||||||||  ||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 1156 ttaagaggagaaagtcgaaaggatgttcttcttgatgacgaattcatcggctttggaagg 1097

                                                                        
Query: 341  actgatcgacttctccaacaagcgatggagcctctcagtttccttctttgtatagtcaga 400
            |||||||||||||||||||| ||| || |||||||||| ||||||||| || || |||||
Sbjct: 1096 actgatcgacttctccaacatgcgttgaagcctctcagattccttcttagtgtattcaga 1037

                                                                        
Query: 401  gcccttctgcaatatcttctttgcaacgttcacatanatctttccgtgcttgacagcagg 460
            |||||||| ||  ||||||||||||  ||||||||| |||||||||| |||| |||||||
Sbjct: 1036 gcccttctccatgatcttctttgcagagttcacatagatctttccgtacttggcagcagg 977

                        
Query: 461  accactgagctt 472
             ||| |||||||
Sbjct: 976  gccagtgagctt 965

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>dbj|AK062024.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-G03, full
            insert sequence
          Length = 1544

 Score =  216 bits (109), Expect = 5e-53
 Identities = 171/192 (89%)
 Strand = Plus / Minus

                                                                        
Query: 281  ttaagaggagaaagctgaaagaatgttcttcttgatggcgaattcatcggctttggaagg 340
            ||||||||||||||  ||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 1158 ttaagaggagaaagtcgaaaggatgttcttcttgatgacgaattcatcggctttggaagg 1099

                                                                        
Query: 341  actgatcgacttctccaacaagcgatggagcctctcagtttccttctttgtatagtcaga 400
            |||||||||||||||||||| ||| || |||||||||| ||||||||| || || |||||
Sbjct: 1098 actgatcgacttctccaacatgcgttgaagcctctcagattccttcttagtgtattcaga 1039

                                                                        
Query: 401  gcccttctgcaatatcttctttgcaacgttcacatanatctttccgtgcttgacagcagg 460
            |||||||| ||  ||||||||||||  ||||||||| |||||||||| |||| |||||||
Sbjct: 1038 gcccttctccatgatcttctttgcagagttcacatagatctttccgtacttggcagcagg 979

                        
Query: 461  accactgagctt 472
             ||| |||||||
Sbjct: 978  gccagtgagctt 967

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>dbj|AK099341.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033028P21, full
            insert sequence
          Length = 1528

 Score =  198 bits (100), Expect = 1e-47
 Identities = 150/167 (89%)
 Strand = Plus / Minus

                                                                        
Query: 281  ttaagaggagaaagctgaaagaatgttcttcttgatggcgaattcatcggctttggaagg 340
            ||||||||||||||  ||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 1162 ttaagaggagaaagtcgaaaggatgttcttcttgatgacgaattcatcggctttggaagg 1103

                                                                        
Query: 341  actgatcgacttctccaacaagcgatggagcctctcagtttccttctttgtatagtcaga 400
            |||||||||||||||||||| ||| || |||||||||| ||||||||| || || |||||
Sbjct: 1102 actgatcgacttctccaacatgcgttgaagcctctcagattccttcttagtgtattcaga 1043

                                                           
Query: 401  gcccttctgcaatatcttctttgcaacgttcacatanatctttccgt 447
            |||||||| ||  ||||||||||||  ||||||||| ||||||||||
Sbjct: 1042 gcccttctccatgatcttctttgcagagttcacatagatctttccgt 996

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>gb|BT016699.1| Zea mays clone Contig532 mRNA sequence
          Length = 1425

 Score =  137 bits (69), Expect = 4e-29
 Identities = 149/176 (84%)
 Strand = Plus / Minus

                                                                        
Query: 297  gaaagaatgttcttcttgatggcgaattcatcggctttggaaggactgatcgacttctcc 356
            ||||||||||||||||| | |  ||||||||| ||||||||||||||||| |||||||||
Sbjct: 1088 gaaagaatgttcttcttaacgatgaattcatcagctttggaaggactgattgacttctcc 1029

                                                                        
Query: 357  aacaagcgatggagcctctcagtttccttctttgtatagtcagagcccttctgcaatatc 416
            | || ||| || ||||||||||| |||||||| || |||||||||||||| |  |  |||
Sbjct: 1028 agcatgcggtgaagcctctcagtctccttcttagtgtagtcagagcccttgtctatgatc 969

                                                                    
Query: 417  ttctttgcaacgttcacatanatctttccgtgcttgacagcaggaccactgagctt 472
            ||||||||| |  ||||||| |||||||| |||||| | |||| ||| ||||||||
Sbjct: 968  ttctttgcagctgtcacatatatctttccatgcttggctgcagaaccgctgagctt 913

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>gb|AY739289.1| Zea mays protein disulfide isomerase (PDIL2-2) mRNA, complete cds
          Length = 1408

 Score =  137 bits (69), Expect = 4e-29
 Identities = 149/176 (84%)
 Strand = Plus / Minus

                                                                        
Query: 297  gaaagaatgttcttcttgatggcgaattcatcggctttggaaggactgatcgacttctcc 356
            ||||||||||||||||| | |  ||||||||| ||||||||||||||||| |||||||||
Sbjct: 1093 gaaagaatgttcttcttaacgatgaattcatcagctttggaaggactgattgacttctcc 1034

                                                                        
Query: 357  aacaagcgatggagcctctcagtttccttctttgtatagtcagagcccttctgcaatatc 416
            | || ||| || ||||||||||| |||||||| || |||||||||||||| |  |  |||
Sbjct: 1033 agcatgcggtgaagcctctcagtctccttcttagtgtagtcagagcccttgtctatgatc 974

                                                                    
Query: 417  ttctttgcaacgttcacatanatctttccgtgcttgacagcaggaccactgagctt 472
            ||||||||| |  ||||||| |||||||| |||||| | |||| ||| ||||||||
Sbjct: 973  ttctttgcagctgtcacatatatctttccatgcttggctgcagaaccgctgagctt 918

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>gb|AC087551.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0431G05,
              complete sequence
          Length = 145044

 Score =  109 bits (55), Expect = 8e-21
 Identities = 67/71 (94%)
 Strand = Plus / Plus

                                                                          
Query: 281    ttaagaggagaaagctgaaagaatgttcttcttgatggcgaattcatcggctttggaagg 340
              ||||||||||||||  ||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 112409 ttaagaggagaaagtcgaaaggatgttcttcttgatgacgaattcatcggctttggaagg 112468

                         
Query: 341    actgatcgact 351
              |||||||||||
Sbjct: 112469 actgatcgact 112479



 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 85/98 (86%)
 Strand = Plus / Plus

                                                                          
Query: 350    cttctccaacaagcgatggagcctctcagtttccttctttgtatagtcagagcccttctg 409
              ||||||||||| ||| || |||||||||| ||||||||| || || ||||||||||||| 
Sbjct: 112568 cttctccaacatgcgttgaagcctctcagattccttcttagtgtattcagagcccttctc 112627

                                                    
Query: 410    caatatcttctttgcaacgttcacatanatctttccgt 447
              ||  ||||||||||||  ||||||||| ||||||||||
Sbjct: 112628 catgatcttctttgcagagttcacatagatctttccgt 112665

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  109 bits (55), Expect = 8e-21
 Identities = 67/71 (94%)
 Strand = Plus / Plus

                                                                           
Query: 281     ttaagaggagaaagctgaaagaatgttcttcttgatggcgaattcatcggctttggaagg 340
               ||||||||||||||  ||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 3234692 ttaagaggagaaagtcgaaaggatgttcttcttgatgacgaattcatcggctttggaagg 3234751

                          
Query: 341     actgatcgact 351
               |||||||||||
Sbjct: 3234752 actgatcgact 3234762



 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 85/98 (86%)
 Strand = Plus / Plus

                                                                           
Query: 350     cttctccaacaagcgatggagcctctcagtttccttctttgtatagtcagagcccttctg 409
               ||||||||||| ||| || |||||||||| ||||||||| || || ||||||||||||| 
Sbjct: 3234851 cttctccaacatgcgttgaagcctctcagattccttcttagtgtattcagagcccttctc 3234910

                                                     
Query: 410     caatatcttctttgcaacgttcacatanatctttccgt 447
               ||  ||||||||||||  ||||||||| ||||||||||
Sbjct: 3234911 catgatcttctttgcagagttcacatagatctttccgt 3234948

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>gb|AC087425.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0676G05,
             complete sequence
          Length = 167317

 Score =  109 bits (55), Expect = 8e-21
 Identities = 67/71 (94%)
 Strand = Plus / Plus

                                                                         
Query: 281   ttaagaggagaaagctgaaagaatgttcttcttgatggcgaattcatcggctttggaagg 340
             ||||||||||||||  ||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct: 28516 ttaagaggagaaagtcgaaaggatgttcttcttgatgacgaattcatcggctttggaagg 28575

                        
Query: 341   actgatcgact 351
             |||||||||||
Sbjct: 28576 actgatcgact 28586



 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 85/98 (86%)
 Strand = Plus / Plus

                                                                         
Query: 350   cttctccaacaagcgatggagcctctcagtttccttctttgtatagtcagagcccttctg 409
             ||||||||||| ||| || |||||||||| ||||||||| || || ||||||||||||| 
Sbjct: 28675 cttctccaacatgcgttgaagcctctcagattccttcttagtgtattcagagcccttctc 28734

                                                   
Query: 410   caatatcttctttgcaacgttcacatanatctttccgt 447
             ||  ||||||||||||  ||||||||| ||||||||||
Sbjct: 28735 catgatcttctttgcagagttcacatagatctttccgt 28772

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>ref|NM_183927.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1116

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 87/102 (85%)
 Strand = Plus / Minus

                                                                        
Query: 296  tgaaagaatgttcttcttgatggcgaattcatcggctttggaaggactgatcgacttctc 355
            |||||| | |||||||||||||  |||||||||||| || || || ||||| ||||||||
Sbjct: 1101 tgaaaggacgttcttcttgatgatgaattcatcggcctttgatgggctgatggacttctc 1042

                                                      
Query: 356  caacaagcgatggagcctctcagtttccttctttgtatagtc 397
            ||||| ||| |  |||||||| ||||||||||| ||||||||
Sbjct: 1041 caacatgcgttcaagcctctctgtttccttcttggtatagtc 1000

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>dbj|AK066111.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050J24, full
            insert sequence
          Length = 1549

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 87/102 (85%)
 Strand = Plus / Minus

                                                                        
Query: 296  tgaaagaatgttcttcttgatggcgaattcatcggctttggaaggactgatcgacttctc 355
            |||||| | |||||||||||||  |||||||||||| || || || ||||| ||||||||
Sbjct: 1214 tgaaaggacgttcttcttgatgatgaattcatcggcctttgatgggctgatggacttctc 1155

                                                      
Query: 356  caacaagcgatggagcctctcagtttccttctttgtatagtc 397
            ||||| ||| |  |||||||| ||||||||||| ||||||||
Sbjct: 1154 caacatgcgttcaagcctctctgtttccttcttggtatagtc 1113

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>gb|AY739288.1| Zea mays protein disulfide isomerase (PDIL2-1) mRNA, complete cds
          Length = 1447

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 82/100 (82%)
 Strand = Plus / Minus

                                                                        
Query: 288  gagaaagctgaaagaatgttcttcttgatggcgaattcatcggctttggaaggactgatc 347
            |||||||  ||||||| |||||||||||||   || || ||||| ||||| || ||||| 
Sbjct: 1117 gagaaagtcgaaagaacgttcttcttgatgataaactcgtcggccttggaggggctgatg 1058

                                                    
Query: 348  gacttctccaacaagcgatggagcctctcagtttccttct 387
            ||||||||||| | |||||  |||||||  ||||||||||
Sbjct: 1057 gacttctccaagatgcgatcaagcctcttggtttccttct 1018

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                                
Query: 350      cttctccaacaagcgatggagcctctcagtttccttctttgtatagtc 397
                ||||||||||| ||| |  |||||||| ||||||||||| ||||||||
Sbjct: 13339884 cttctccaacatgcgttcaagcctctctgtttccttcttggtatagtc 13339837



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 296      tgaaagaatgttcttcttgatggcgaattcatcggc 331
                |||||| | |||||||||||||  ||||||||||||
Sbjct: 13340044 tgaaaggacgttcttcttgatgatgaattcatcggc 13340009

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>dbj|AP003331.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1088D01
          Length = 146144

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                             
Query: 350   cttctccaacaagcgatggagcctctcagtttccttctttgtatagtc 397
             ||||||||||| ||| |  |||||||| ||||||||||| ||||||||
Sbjct: 80242 cttctccaacatgcgttcaagcctctctgtttccttcttggtatagtc 80195



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 296   tgaaagaatgttcttcttgatggcgaattcatcggc 331
             |||||| | |||||||||||||  ||||||||||||
Sbjct: 80402 tgaaaggacgttcttcttgatgatgaattcatcggc 80367

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>gb|AC010853.11| Homo sapiens chromosome 18, clone RP11-349D12, complete sequence
          Length = 184396

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 177   ctctattttccttttgtcttt 197
             |||||||||||||||||||||
Sbjct: 74038 ctctattttccttttgtcttt 74018

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>gb|AC154118.6| Mus musculus chromosome 19, clone RP24-340C10, complete sequence
          Length = 141422

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 185   tccttttgtctttcttcgcttctct 209
             ||||||||||||||||| |||||||
Sbjct: 83077 tccttttgtctttcttctcttctct 83101

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>gb|AC142293.2| Homo sapiens fosmid clone XXFOS-8806F2 from 4, complete sequence
          Length = 32823

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 407   ctgcaatatcttctttgcaac 427
             |||||||||||||||||||||
Sbjct: 18966 ctgcaatatcttctttgcaac 18946

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>emb|AL606976.25| Mouse DNA sequence from clone RP23-113P22 on chromosome 4, complete
              sequence
          Length = 169465

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 163    gccatctctctaatctctattttcctttt 191
              |||||||||||| |||| |||||||||||
Sbjct: 135130 gccatctctctagtctccattttcctttt 135102

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>gb|AC163281.3| Mus musculus BAC clone RP23-443B19 from chromosome 8, complete sequence
          Length = 197609

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 173   taatctctattttccttttgtctt 196
             |||||| |||||||||||||||||
Sbjct: 43611 taatctttattttccttttgtctt 43588

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>ref|XM_477491.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2010

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 302  aatgttcttcttgatggcga 321
            ||||||||||||||||||||
Sbjct: 1435 aatgttcttcttgatggcga 1454

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>gb|AC121116.7| Mus musculus chromosome 8, clone RP23-267D22, complete sequence
          Length = 200891

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 375    tcagtttccttctttgtata 394
              ||||||||||||||||||||
Sbjct: 198845 tcagtttccttctttgtata 198864

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>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold
          Length = 1996640

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 180     tattttccttttgtctttct 199
               ||||||||||||||||||||
Sbjct: 1851099 tattttccttttgtctttct 1851080

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>gb|AC183546.3| Pan troglodytes BAC clone CH251-245P24 from chromosome 2, complete
              sequence
          Length = 202850

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     accataaaagtaaatcacat 109
              ||||||||||||||||||||
Sbjct: 135657 accataaaagtaaatcacat 135676

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>gb|BC043952.1| Xenopus laevis similar to chromosome 20 open reading frame 6 (human),
            mRNA (cDNA clone IMAGE:5570650), partial cds
          Length = 1703

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 181  attttccttttgtctttctt 200
            ||||||||||||||||||||
Sbjct: 1662 attttccttttgtctttctt 1643

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>gb|AC122936.3| Mus musculus BAC clone RP23-20H6 from 5, complete sequence
          Length = 234064

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 375   tcagtttccttctttgtata 394
             ||||||||||||||||||||
Sbjct: 96200 tcagtttccttctttgtata 96181

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>gb|AC122830.4| Mus musculus BAC clone RP23-224I23 from 8, complete sequence
          Length = 257003

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 165    catctctctaatctctattt 184
              ||||||||||||||||||||
Sbjct: 213250 catctctctaatctctattt 213269

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>gb|AC116323.6| Mus musculus BAC clone RP23-281F3 from 8, complete sequence
          Length = 182204

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 165    catctctctaatctctattt 184
              ||||||||||||||||||||
Sbjct: 124415 catctctctaatctctattt 124396

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>gb|AC005236.4| Homo sapiens BAC clone RP11-479C13 from 7, complete sequence
          Length = 87593

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 363   cgatggagcctctcagtttc 382
             ||||||||||||||||||||
Sbjct: 34205 cgatggagcctctcagtttc 34186

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>gb|AC004594.2| Homo sapiens PAC clone RP5-1101C3 from 7, complete sequence
          Length = 151874

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 93     ataaaagtaaatcacatgtt 112
              ||||||||||||||||||||
Sbjct: 121581 ataaaagtaaatcacatgtt 121562

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>gb|AC130652.27| Medicago truncatula clone mth1-1k12, complete sequence
          Length = 105218

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 417   ttctttgcaacgttcacata 436
             ||||||||||||||||||||
Sbjct: 19319 ttctttgcaacgttcacata 19338

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>gb|AC108436.5| Mus musculus chromosome 8, clone RP23-230G11, complete sequence
          Length = 185534

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 375    tcagtttccttctttgtata 394
              ||||||||||||||||||||
Sbjct: 182094 tcagtttccttctttgtata 182075

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>emb|AL953860.3| Human DNA sequence from clone RP5-1107B12 on chromosome X Contains the
             5' end of a novel gene (MGC44287), complete sequence
          Length = 46890

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   tctattttccttttgtcttt 197
             ||||||||||||||||||||
Sbjct: 28163 tctattttccttttgtcttt 28144

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>emb|AL035661.16|HS568C11 Human DNA sequence from clone RP4-568C11 on chromosome 20p11.21-11.23
            Contains the CST7 gene for cystatin F
            (leukocystatin)(cystatin 7, leukocystatin, cystatin-like
            metastasis-associated protein, CMAP), the gene C20ORF3
            for chromosome 20 open reading frame 3, the 3' end of the
            ACAS2L gene for acetyl-Coenzyme A synthetase (AMP
            forming)-like and a CpG island, complete sequence
          Length = 103681

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 77   aaatccctgtataaccataaaagt 100
            |||||||||||||||||| |||||
Sbjct: 5746 aaatccctgtataaccattaaagt 5769

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>emb|AL034402.9|HS30G7 Human DNA sequence from clone RP1-30G7 on chromosome Xp11.3-11.4
             Contains a novel gene, an actin, beta (ACTB) pseudogene
             and a CpG island, complete sequence
          Length = 123637

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   tctattttccttttgtcttt 197
             ||||||||||||||||||||
Sbjct: 84210 tctattttccttttgtcttt 84229

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>gb|AC173999.3| Pan troglodytes BAC clone CH251-530E14 from chromosome 7, complete
              sequence
          Length = 166256

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 363    cgatggagcctctcagtttc 382
              ||||||||||||||||||||
Sbjct: 117527 cgatggagcctctcagtttc 117546

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>dbj|AK127865.1| Homo sapiens cDNA FLJ45968 fis, clone PLACE7016321
          Length = 3889

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 83   ctgtataaccataaaagtaa 102
            ||||||||||||||||||||
Sbjct: 2484 ctgtataaccataaaagtaa 2465

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>gb|AC025028.21| Homo sapiens 3 BAC RP11-238M12 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 145969

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   ttttccttttgtctttcttc 201
             ||||||||||||||||||||
Sbjct: 35791 ttttccttttgtctttcttc 35772

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>gb|AC090096.5| Homo sapiens chromosome 8, clone RP11-159C14, complete sequence
          Length = 173158

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     accataaaagtaaatcacat 109
              ||||||||||||||||||||
Sbjct: 107023 accataaaagtaaatcacat 107042

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>gb|AC079920.6| Homo sapiens BAC clone RP11-325K1 from 7, complete sequence
          Length = 130284

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 363   cgatggagcctctcagtttc 382
             ||||||||||||||||||||
Sbjct: 79691 cgatggagcctctcagtttc 79710

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>gb|AC008569.7| Homo sapiens chromosome 19 clone CTC-548K16, complete sequence
          Length = 227245

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 167    tctctctaatctctattttc 186
              ||||||||||||||||||||
Sbjct: 120017 tctctctaatctctattttc 120036

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>dbj|AK052063.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length enriched
            library, clone:D230040N22 product:unclassifiable, full
            insert sequence
          Length = 3051

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 174  aatctctattttccttttgtcttt 197
            |||||||||||||||||| |||||
Sbjct: 1955 aatctctattttccttttttcttt 1978

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>gb|AC024941.30|AC024941 Homo sapiens 12 BAC RP11-900F13 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 172246

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 83     ctgtataaccataaaagtaa 102
              ||||||||||||||||||||
Sbjct: 125652 ctgtataaccataaaagtaa 125633

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 302      aatgttcttcttgatggcga 321
                ||||||||||||||||||||
Sbjct: 10843881 aatgttcttcttgatggcga 10843862

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>gb|AC074087.4| Homo sapiens BAC clone RP11-26C10 from 4, complete sequence
          Length = 156083

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 182   ttttccttttgtctttcttc 201
             ||||||||||||||||||||
Sbjct: 31068 ttttccttttgtctttcttc 31087

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>gb|AC108938.3| Homo sapiens BAC clone RP11-701A10 from 2, complete sequence
          Length = 175222

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    accataaaagtaaatcacat 109
             ||||||||||||||||||||
Sbjct: 92695 accataaaagtaaatcacat 92714

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>gb|AC010095.6| Homo sapiens BAC clone RP11-348G16 from 2, complete sequence
          Length = 179517

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 90    accataaaagtaaatcacat 109
             ||||||||||||||||||||
Sbjct: 47726 accataaaagtaaatcacat 47707

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>gb|AC013271.4| Homo sapiens BAC clone RP11-385J6 from 2, complete sequence
          Length = 155702

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    accataaaagtaaatcacat 109
             ||||||||||||||||||||
Sbjct: 31166 accataaaagtaaatcacat 31185

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>gb|AC007546.6| Homo sapiens 12 BAC RP11-946P6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 168396

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 372   ctctcagtttccttctttgt 391
             ||||||||||||||||||||
Sbjct: 99531 ctctcagtttccttctttgt 99550

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>dbj|AP005100.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0018O23
          Length = 142143

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 302   aatgttcttcttgatggcga 321
             ||||||||||||||||||||
Sbjct: 54640 aatgttcttcttgatggcga 54621

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>dbj|AP005766.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0028O21
          Length = 134543

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 302   aatgttcttcttgatggcga 321
             ||||||||||||||||||||
Sbjct: 20256 aatgttcttcttgatggcga 20237

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>dbj|BS000052.1| Pan troglodytes chromosome 22 clone:RP43-049N07, map 22, complete
              sequences
          Length = 180152

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 172    ctaatctctattttcctttt 191
              ||||||||||||||||||||
Sbjct: 106801 ctaatctctattttcctttt 106782

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>emb|AL671865.11| Mouse DNA sequence from clone RP23-312B13 on chromosome X, complete
              sequence
          Length = 226471

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 183    tttccttttgtctttcttcgcttc 206
              ||||||||||||||||||| ||||
Sbjct: 155009 tttccttttgtctttcttcccttc 155032

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>emb|AJ277755.1|LPN277755 Legionella pneumophila serogroup 1, 30 kb instable genetic element
          Length = 29223

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    tttgttcttgagtaaactct 62
             ||||||||||||||||||||
Sbjct: 25134 tttgttcttgagtaaactct 25153

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>gb|AC145183.3| Macropus eugenii clone ME_KBa-60J17, complete sequence
          Length = 168360

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 180    tattttccttttgtctttct 199
              ||||||||||||||||||||
Sbjct: 136830 tattttccttttgtctttct 136811

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>emb|AL442163.5|CNS07ECT Human chromosome 14 DNA sequence BAC R-90P16 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 167642

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   tctattttccttttgtcttt 197
             ||||||||||||||||||||
Sbjct: 19346 tctattttccttttgtcttt 19327

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>emb|AL162191.6|CNS01RHQ Human chromosome 14 DNA sequence BAC R-349D8 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 204662

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 192    gtctttcttcgcttctctct 211
              ||||||||||||||||||||
Sbjct: 118488 gtctttcttcgcttctctct 118469

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>dbj|AP001676.1| Homo sapiens genomic DNA, chromosome 21q, section 20/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 172    ctaatctctattttcctttt 191
              ||||||||||||||||||||
Sbjct: 163745 ctaatctctattttcctttt 163726

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>dbj|AP006248.1| Homo sapiens genomic DNA, chromosome 8, clone:RP11-349F21, complete
             sequence
          Length = 186218

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 174   aatctctattttccttttgtcttt 197
             |||||||||||| |||||||||||
Sbjct: 92713 aatctctattttgcttttgtcttt 92736

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>gb|AC164652.3| Ornithorhynchus anatinus BAC clone OABb-566A1 from chromosome unknown,
              complete sequence
          Length = 145427

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 161    ctgccatctctctaatctct 180
              ||||||||||||||||||||
Sbjct: 132985 ctgccatctctctaatctct 133004

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>gb|AC125102.4| Mus musculus BAC clone RP24-208N22 from 6, complete sequence
          Length = 163235

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 174    aatctctattttccttttgtcttt 197
              |||||||||||||||||| |||||
Sbjct: 107877 aatctctattttccttttttcttt 107854

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>gb|AC134838.4| Mus musculus BAC clone RP24-350C10 from 8, complete sequence
          Length = 177716

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 173   taatctctattttccttttgtctt 196
             |||||| |||||||||||||||||
Sbjct: 54513 taatctttattttccttttgtctt 54536

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>emb|AL954857.10| Zebrafish DNA sequence from clone DKEY-216D12 in linkage group 23,
             complete sequence
          Length = 65564

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 189   tttgtctttcttcgcttctctctt 212
             ||||||||||||| ||||||||||
Sbjct: 28480 tttgtctttcttctcttctctctt 28457

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>gb|AC161507.2| Mus musculus chromosome 5, clone RP23-76L18, complete sequence
          Length = 262831

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 375   tcagtttccttctttgtata 394
             ||||||||||||||||||||
Sbjct: 26532 tcagtttccttctttgtata 26551

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>emb|AL844882.9| Mouse DNA sequence from clone RP23-360H15 on chromosome 2, complete
              sequence
          Length = 167978

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 279    cattaagaggagaaagctga 298
              ||||||||||||||||||||
Sbjct: 114715 cattaagaggagaaagctga 114734

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>emb|AL450442.2|CNS07EEY Human chromosome 14 DNA sequence BAC R-214N1 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 145035

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 178    tctattttccttttgtcttt 197
              ||||||||||||||||||||
Sbjct: 141287 tctattttccttttgtcttt 141268

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>emb|AL137065.10| Human DNA sequence from clone RP11-4P13 on chromosome Xq22.1-23, complete
              sequence
          Length = 119311

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 178    tctattttccttttgtcttt 197
              ||||||||||||||||||||
Sbjct: 102482 tctattttccttttgtcttt 102463

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>dbj|AP000403.1| Homo sapiens genomic DNA, chromosome 21q21.2, LL56-APP region,
            clone:B330A3, complete sequence
          Length = 160920

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 172  ctaatctctattttcctttt 191
            ||||||||||||||||||||
Sbjct: 5144 ctaatctctattttcctttt 5125

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>dbj|AB020863.1| Homo sapiens genomic DNA of 8p21.3-p22 anti-oncogene of hepatocellular
             colorectal and non-small cell lung cancer , segment 6/11
          Length = 156909

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 174   aatctctattttccttttgtcttt 197
             |||||||||||| |||||||||||
Sbjct: 40282 aatctctattttgcttttgtcttt 40305


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,628,112
Number of Sequences: 3902068
Number of extensions: 4628112
Number of successful extensions: 98869
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98607
Number of HSP's gapped (non-prelim): 260
length of query: 479
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 457
effective length of database: 17,147,199,772
effective search space: 7836270295804
effective search space used: 7836270295804
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result