ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags12j11 |
|---|---|
| Clone Library Name | barley_pub |
>IF2_GLUOX (Q5FQM3) Translation initiation factor IF-2| Length = 917 Score = 31.6 bits (70), Expect = 1.9 Identities = 21/59 (35%), Positives = 23/59 (38%) Frame = -3 Query: 604 AGAKAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGTGIGAMWGRCSVRTRCERTDE 428 +GA A ER P P G P P RP A G G GR VR E D+ Sbjct: 245 SGAAAGGDDERRPAPRRSGPGAPPAPPRRPSA-PSRKGGGSDRRSGRIDVRAAIEGDDD 302
>CO4A1_CAEEL (P17139) Collagen alpha-1(IV) chain precursor| Length = 1759 Score = 30.4 bits (67), Expect = 4.2 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = -3 Query: 562 PGAEGAELDPGPQGRPEAMVGSSGTGIGAMWGRCSVRT 449 PG +GA+ DPGP G P G+ + GR VRT Sbjct: 191 PGLKGAKGDPGPYGLP------GFPGVSGLKGRMGVRT 222
>COCA1_RAT (P70560) Collagen alpha-1(XII) chain (Fragment)| Length = 317 Score = 30.0 bits (66), Expect = 5.4 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = -3 Query: 601 GAKAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSG 491 G P + R PG+ G+ PGP GRP G+SG Sbjct: 200 GPPGPQGESRTGPPGSTGSRGPPGPPGRP----GNSG 232
>COCA1_MOUSE (Q60847) Collagen alpha-1(XII) chain precursor| Length = 3119 Score = 30.0 bits (66), Expect = 5.4 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = -3 Query: 601 GAKAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSG 491 G P + R PG+ G+ PGP GRP G+SG Sbjct: 3002 GPPGPQGESRTGPPGSTGSRGPPGPPGRP----GNSG 3034
>SYNJ1_MOUSE (Q8CHC4) Synaptojanin-1 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 1) Length = 1574 Score = 30.0 bits (66), Expect = 5.4 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = +3 Query: 390 TFDDSNGLHGWAYSSVLSHLVLTEHRPHMAPMPVPLLP 503 +FDD W+ + +S VL RP P PVPLLP Sbjct: 1516 SFDDD-----WSKGASVSFCVLPARRPPPPPPPVPLLP 1548
>COCA1_HUMAN (Q99715) Collagen alpha-1(XII) chain precursor| Length = 3063 Score = 30.0 bits (66), Expect = 5.4 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = -3 Query: 601 GAKAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSG 491 G P + R PG+ G+ PGP GRP G+SG Sbjct: 3001 GPPGPQGESRTGPPGSTGSRGPPGPPGRP----GNSG 3033
>COCA1_BOVIN (P25508) Collagen alpha-1(XII) chain (Fragments)| Length = 86 Score = 29.6 bits (65), Expect = 7.1 Identities = 15/37 (40%), Positives = 18/37 (48%) Frame = -3 Query: 601 GAKAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSG 491 G P + R PG+ G+ PGP GRP G SG Sbjct: 52 GPPGPQGESRTGPPGSTGSRGPPGPPGRP----GDSG 84
>SYNJ1_RAT (Q62910) Synaptojanin-1 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 1) Length = 1574 Score = 29.6 bits (65), Expect = 7.1 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = +3 Query: 390 TFDDSNGLHGWAYSSVLSHLVLTEHRPHMAPMPVPLLP 503 +FDD W+ + +S VL RP P PVPLLP Sbjct: 1516 SFDDD-----WSKGTNVSFCVLPARRPPPPPPPVPLLP 1548
>CO4A4_BOVIN (Q29442) Collagen alpha-4(IV) chain (Fragment)| Length = 453 Score = 29.6 bits (65), Expect = 7.1 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = -3 Query: 601 GAKAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSG 491 GA A + +PDPG G + PGP G P + G G Sbjct: 7 GAPGKALKGDIPDPGLPGDQGPPGPDG-PRGVPGPPG 42
>COL39_CAEEL (Q09455) Cuticle collagen 39 precursor| Length = 323 Score = 29.3 bits (64), Expect = 9.3 Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 4/44 (9%) Frame = -3 Query: 604 AGAKAPAQQERVP----DPGAEGAELDPGPQGRPEAMVGSSGTG 485 AG K+ QQE + PG GA PGPQG P G G G Sbjct: 122 AGPKSHEQQECIKCPAGSPGPAGAPGAPGPQG-PNGQPGHPGQG 164
>CSKI2_HUMAN (Q8WXE0) Caskin-2| Length = 1202 Score = 29.3 bits (64), Expect = 9.3 Identities = 15/41 (36%), Positives = 21/41 (51%) Frame = -3 Query: 604 AGAKAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGTGI 482 AG P P ++ E +PGP+G P + GSSG G+ Sbjct: 911 AGPSEPPGPPAPAGPASDTEEEEPGPEGTPPSR-GSSGEGL 950
>COCA1_CHICK (P13944) Collagen alpha-1(XII) chain precursor (Fibrochimerin)| Length = 3124 Score = 29.3 bits (64), Expect = 9.3 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = -3 Query: 601 GAKAPAQQERVPDPGAEGAELDPGPQGRP 515 G P + R PG+ G+ PGP GRP Sbjct: 3005 GPPGPQGESRTGPPGSTGSRGPPGPPGRP 3033
>CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain| Length = 1049 Score = 29.3 bits (64), Expect = 9.3 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Frame = -3 Query: 589 PAQQERVPDPGAEGAELDPGPQG-RPEAMVGSSG 491 P Q+ +PG GA+ DPGP+G R EA GS G Sbjct: 269 PGQRGAAGEPGKNGAKGDPGPRGERGEA--GSPG 300
>VWF_PIG (Q28833) Von Willebrand factor precursor (vWF) (Fragment)| Length = 2482 Score = 29.3 bits (64), Expect = 9.3 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 9/80 (11%) Frame = -1 Query: 300 CCPSARTAAVVGDHGSYSVIYMHDLCIILLYSRCRSVMAEIIK*G*Q----QTSCTQCA- 136 CCP+ R V + ++I + +I + + CR ++ E + G + +T+C C Sbjct: 2239 CCPTCRCEPVEACLLNGTIIGAGESLMIDVCTTCRCMLQEGVVFGFKLECKKTTCEACPL 2298 Query: 135 ----ESERYACCRACLPLYC 88 E CC CLP C Sbjct: 2299 GYKEEKMPGECCGRCLPTAC 2318
>ATG4D_MOUSE (Q8BGV9) Cysteine protease ATG4D (EC 3.4.22.-) (Autophagy-related| protein 4 homolog D) (Autophagin-4) (Autophagy-related cysteine endopeptidase 4) (AUT-like 4 cysteine endopeptidase) Length = 474 Score = 29.3 bits (64), Expect = 9.3 Identities = 16/39 (41%), Positives = 20/39 (51%) Frame = -3 Query: 604 AGAKAPAQQERVPDPGAEGAELDPGPQGRPEAMVGSSGT 488 A + P Q R+PDP + GP G A +GSSGT Sbjct: 22 ADCRRPRGQTRIPDPS------NLGPSGSGVAALGSSGT 54 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,555,576 Number of Sequences: 219361 Number of extensions: 1618723 Number of successful extensions: 5985 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4445 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5902 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5367617986 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
