ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags12i16 |
|---|---|
| Clone Library Name | barley_pub |
>K6PF2_STRCO (Q9L1L8) 6-phosphofructokinase 2 (EC 2.7.1.11) (Phosphofructokinase| 2) (Phosphohexokinase 2) Length = 341 Score = 41.2 bits (95), Expect = 0.002 Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 3/128 (2%) Frame = -1 Query: 593 EQLIKNKGFCVVCVAEAAGQ---ELLQNSGATDASGNAILSDIGVHMQQKIKTHFKGIGV 423 E+ + K F VVCVAE A + GA D G+ IG + +++ + +G Sbjct: 207 ERFSRGKKFAVVCVAEGAHPAEGSMDYGKGAIDKFGHERFQGIGTALAFELE---RRLGK 263 Query: 422 HADIKYIDPTYMVRACRANASDAILCTVLGQNAVHGAFAGFSGITSCICNTHYVYLPVTQ 243 A K + ++ R A D +L T G +AV A G G + + T V +P+ + Sbjct: 264 EA--KPVILGHVQRGGVPTAYDRVLATRFGWHAVEAAHRGDFGRMTALRGTDVVMVPLAE 321 Query: 242 VITAPKRV 219 +T K V Sbjct: 322 AVTELKTV 329
>K6PF1_BACTN (Q8A8R5) 6-phosphofructokinase 1 (EC 2.7.1.11) (Phosphofructokinase| 1) (Phosphohexokinase 1) Length = 327 Score = 34.3 bits (77), Expect = 0.29 Identities = 21/85 (24%), Positives = 37/85 (43%) Frame = -1 Query: 470 VHMQQKIKTHFKGIGVHADIKYIDPTYMVRACRANASDAILCTVLGQNAVHGAFAGFSGI 291 ++ ++K + G V I ++ R +A+D IL + LG+ A+ G + Sbjct: 235 IYYADRVKKEYPGYDVRVSIL----GHLQRGGAPSANDRILASRLGEAAIQALMEGQRNV 290 Query: 290 TSCICNTHYVYLPVTQVITAPKRVN 216 I N VY+P Q I K ++ Sbjct: 291 MIGIRNNEIVYVPFVQAIKKDKPID 315
>SYLC_MOUSE (Q8BMJ2) Leucyl-tRNA synthetase, cytoplasmic (EC 6.1.1.4)| (Leucine--tRNA ligase) (LeuRS) Length = 1178 Score = 33.5 bits (75), Expect = 0.49 Identities = 17/43 (39%), Positives = 22/43 (51%) Frame = +1 Query: 79 ELIAQGKNLTPKFRSTYSSKSVATGGQRKSGWPVEVRQRCHIL 207 +L A GK+L P S Y VA ++ WPV VR H+L Sbjct: 671 DLRASGKDLIPNHLSYYIYNHVAMWPEQSDKWPVSVRANGHLL 713
>LIMK1_DROME (Q8IR79) LIM domain kinase 1 (EC 2.7.11.1) (LIMK-1) (dLIMK)| Length = 1257 Score = 33.1 bits (74), Expect = 0.64 Identities = 16/62 (25%), Positives = 27/62 (43%) Frame = -3 Query: 333 TKCRPRSVCWVQRHHFLHLQHSLCVPSGYASHHGAEACEPQGQDVAPLPHFHRPAGLPLT 154 + C P + W+ + H L L +S+H C +G+ + PLP G+P + Sbjct: 1063 SSCPPSASDWLPKKHKLTLPLPSAQQQRTSSNHRLPMCNNKGKTLKPLPSRTGSQGIPAS 1122 Query: 153 TC 148 C Sbjct: 1123 NC 1124
>GRN_RAT (P23785) Granulins precursor [Contains: Acrogranin; Granulin-1| (Granulin G); Granulin-2 (Granulin F); Granulin-3 (Granulin B) (Epithelin-2); Granulin-4 (Granulin A) (Epithelin-1); Granulin-5 (Granulin C); Granulin-6 (Granulin D); Granulin-7 (Gran Length = 588 Score = 32.0 bits (71), Expect = 1.4 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Frame = -3 Query: 357 CDPVHCAWTKCR-PRSVCWVQRHHFLHLQHSLCVPSGYASHHGAEACEPQGQDVAP 193 C + +W C+ P +VC R H C P+GY + A CE V P Sbjct: 454 CPSLKGSWACCQLPHAVCCEDRQH--------CCPAGYTCNVKARTCEKDAGSVQP 501
>MUA3_CAEEL (P34576) Transmembrane cell adhesion receptor mua-3 precursor (Muscle| attachment abnormal protein 3) Length = 3767 Score = 31.2 bits (69), Expect = 2.4 Identities = 25/80 (31%), Positives = 33/80 (41%), Gaps = 4/80 (5%) Frame = -3 Query: 534 RVTAKLRRN*CIRKCNT*RHWCSHATKDQDAFQGHRCPC--GYKIHRPDVHG-PGLSCQC 364 RV KL + +C RH CS +D +G+ C C GY P++ PG C Sbjct: 2355 RVCVKL-----VDECREGRHTCSSHADCRDLEEGYTCECRDGYVDRSPNLASQPGRVCSA 2409 Query: 363 IR-CDPVHCAWTKCRPRSVC 307 C P H C +VC Sbjct: 2410 PEVCPPNH----DCSSAAVC 2425 Score = 30.8 bits (68), Expect = 3.2 Identities = 26/90 (28%), Positives = 30/90 (33%), Gaps = 7/90 (7%) Frame = -3 Query: 459 TKDQDAFQGHRCPCGYKIHRP--DVHGPGLSCQCIRCDPVHCAWTKCRPRSVCWVQRHHF 286 T+ + Q CP K P DV P C R HCA RPR VC Sbjct: 1400 TRLRSMIQKAACPSPTKQETPSEDVCNPRTQTGCDRSLNEHCAVENGRPRCVC------- 1452 Query: 285 LHLQHSLCVPSGYASHH-----GAEACEPQ 211 P G+ H G + C PQ Sbjct: 1453 ---------PEGFTRHPFTRVCGGDLCNPQ 1473
>KRA49_HUMAN (Q9BYQ8) Keratin-associated protein 4-9 (Keratin-associated protein| 4.9) (Ultrahigh sulfur keratin-associated protein 4.9) (Fragment) Length = 191 Score = 30.8 bits (68), Expect = 3.2 Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Frame = -3 Query: 369 QCIRCDPVHCAWTKCRPRSVCWVQRHHFLHLQHSLCVPSGYASHHGAEACEPQ-GQDVAP 193 QC C PV C T CRP S C H S C PS S C+PQ Q V Sbjct: 74 QC--CQPVCCQPTCCRP-SCCETTCCHPRCCISSCCRPSCCVS----SCCKPQCCQSVCC 126 Query: 192 LPHFHRPAGLPLTTCC 145 P+ RP+ +++CC Sbjct: 127 QPNCCRPS-CSISSCC 141
>COBT_SALTI (Q8Z5N9) Nicotinate-nucleotide--dimethylbenzimidazole| phosphoribosyltransferase (EC 2.4.2.21) (NN:DBI PRT) (N(1)-alpha-phosphoribosyltransferase) Length = 356 Score = 30.8 bits (68), Expect = 3.2 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -2 Query: 205 GCGTVASLPQASRTSADHLLLQTLNYKC 122 GCG +A P SR+ A+ LLL+ Y C Sbjct: 133 GCGNIAVGPAMSRSQAEALLLEVSRYTC 160
>KR413_HUMAN (Q9BYU7) Keratin-associated protein 4-13 (Keratin-associated| protein 4.13) (Ultrahigh sulfur keratin-associated protein 4.13) Length = 106 Score = 30.4 bits (67), Expect = 4.2 Identities = 17/51 (33%), Positives = 21/51 (41%) Frame = -3 Query: 372 CQCIRCDPVHCAWTKCRPRSVCWVQRHHFLHLQHSLCVPSGYASHHGAEAC 220 CQ C P +C + CRP+ C R + S CV Y H G C Sbjct: 56 CQPTCCCPSYCVSSCCRPQ-CCQTTRCRTTCCRPSCCVSRCYRPHCGQSLC 105
>SYLC_PONPY (Q5R614) Leucyl-tRNA synthetase, cytoplasmic (EC 6.1.1.4)| (Leucine--tRNA ligase) (LeuRS) Length = 1176 Score = 30.4 bits (67), Expect = 4.2 Identities = 15/43 (34%), Positives = 20/43 (46%) Frame = +1 Query: 79 ELIAQGKNLTPKFRSTYSSKSVATGGQRKSGWPVEVRQRCHIL 207 +L GK+L P S Y VA ++ WP VR H+L Sbjct: 669 DLRVSGKDLVPNHLSYYLYNHVAMWPEQSDKWPTAVRANGHLL 711
>SYLC_HUMAN (Q9P2J5) Leucyl-tRNA synthetase, cytoplasmic (EC 6.1.1.4)| (Leucine--tRNA ligase) (LeuRS) Length = 1176 Score = 30.4 bits (67), Expect = 4.2 Identities = 15/43 (34%), Positives = 20/43 (46%) Frame = +1 Query: 79 ELIAQGKNLTPKFRSTYSSKSVATGGQRKSGWPVEVRQRCHIL 207 +L GK+L P S Y VA ++ WP VR H+L Sbjct: 669 DLRVSGKDLVPNHLSYYLYNHVAMWPEQSDKWPTAVRANGHLL 711
>GRN_HUMAN (P28799) Granulins precursor (Proepithelin) (PEPI) [Contains:| Acrogranin; Paragranulin; Granulin-1 (Granulin G); Granulin-2 (Granulin F); Granulin-3 (Granulin B); Granulin-4 (Granulin A); Granulin-5 (Granulin C); Granulin-6 (Granulin D); Granul Length = 593 Score = 30.0 bits (66), Expect = 5.4 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 1/56 (1%) Frame = -3 Query: 357 CDPVHCAWTKCR-PRSVCWVQRHHFLHLQHSLCVPSGYASHHGAEACEPQGQDVAP 193 C + +W C+ P +VC R H C P+GY + A +CE + P Sbjct: 457 CPSLGGSWACCQLPHAVCCEDRQH--------CCPAGYTCNVKARSCEKEVVSAQP 504
>COBT_SALTY (Q05603) Nicotinate-nucleotide--dimethylbenzimidazole| phosphoribosyltransferase (EC 2.4.2.21) (NN:DBI PRT) (N(1)-alpha-phosphoribosyltransferase) Length = 356 Score = 30.0 bits (66), Expect = 5.4 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -2 Query: 205 GCGTVASLPQASRTSADHLLLQTLNYKC 122 GCG +A P SR A+ LLL+ Y C Sbjct: 133 GCGNIAVGPAMSRLQAEALLLEVSRYTC 160
>GRN_MOUSE (P28798) Granulins precursor (Proepithelin) (PEPI) (PC cell-derived| growth factor) (PCDGF) [Contains: Acrogranin; Granulin-1; Granulin-2; Granulin-3; Granulin-4; Granulin-5; Granulin-6; Granulin-7] Length = 589 Score = 30.0 bits (66), Expect = 5.4 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Frame = -3 Query: 357 CDPVHCAWTKCR-PRSVCWVQRHHFLHLQHSLCVPSGYASHHGAEACEPQGQDVAP 193 C + +W C+ P +VC R H C P+GY + A CE + P Sbjct: 455 CPSLKGSWACCQLPHAVCCEDRQH--------CCPAGYTCNVKARTCEKDVDFIQP 502
>PROZ_BOVIN (P00744) Vitamin K-dependent protein Z| Length = 396 Score = 29.6 bits (65), Expect = 7.1 Identities = 28/105 (26%), Positives = 40/105 (38%), Gaps = 10/105 (9%) Frame = -3 Query: 471 CSHATKDQDAFQGHRCPCGYKIHRPDVHGPGLSCQCIRCDPVHCAWTK--CRP---RSVC 307 C + QD+ +G+ C C P GP + C P+ + C P C Sbjct: 56 CLNNGSCQDSIRGYACTCA-----PGYEGPNCAFAESECHPLRLDGCQHFCYPGPESYTC 110 Query: 306 WVQRHHFLHLQHSLCVPSGYAS--HHGAEACE-PQG--QDVAPLP 187 R H L C+P + G E C+ PQG Q++ P P Sbjct: 111 SCARGHKLGQDRRSCLPHDRCACGTLGPECCQRPQGSQQNLLPFP 155
>VSR6_ARATH (Q9FYH7) Vacuolar sorting receptor 6 precursor (AtVSR6) (Epidermal| growth factor receptor-like protein 6) (AtELP6) (BP80-like protein d) (AtBP80d) Length = 622 Score = 29.6 bits (65), Expect = 7.1 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = -3 Query: 435 GHRCPCGYKIHRPDVHGPGLSCQCIRCDPVHC 340 G RCP G+K G GL C+ +CD +C Sbjct: 497 GCRCPPGFK-------GDGLKCEACQCDGCNC 521
>CD97_MOUSE (Q9Z0M6) CD97 antigen precursor| Length = 818 Score = 29.6 bits (65), Expect = 7.1 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Frame = -3 Query: 501 IRKCNT*RHWCSHATKDQDAFQGHRCPC--GYKIHRPDVHGPGLSCQCIRCDPVHCAWT 331 + +C++ +H C ++T ++ ++C C G+K + GP CQ +P WT Sbjct: 215 VDECSSGQHQCHNSTVCKNTVGSYKCHCRPGWKPTSGSLRGPDTICQ----EPPFPTWT 269
>LTBP2_HUMAN (Q14767) Latent transforming growth factor beta-binding protein 2| precursor (LTBP-2) Length = 1821 Score = 24.3 bits (51), Expect(2) = 8.0 Identities = 11/33 (33%), Positives = 16/33 (48%) Frame = +2 Query: 380 PGPCTSGRCILYPHGHRCP*NAS*SFVACEHQC 478 PG C +GRC+ G+ C N + A +C Sbjct: 1494 PGLCPNGRCLNTVPGYVCLCNPGFHYDASHKKC 1526 Score = 23.5 bits (49), Expect(2) = 8.0 Identities = 18/70 (25%), Positives = 23/70 (32%) Frame = +2 Query: 188 GNGATSCPCGSHASAP**LA*PEGTHSEXXXXXXXXXXTQQTLRGRHFVQAQCTGSHRMH 367 G + P G HA AP T + L GR+ QA+C + Sbjct: 1393 GQSMSEAPTGDHAPAP--------TRMDCYSGQKGHAPCSSVL-GRNTTQAECCCTQGAT 1443 Query: 368 WHDKPGPCTS 397 W D C S Sbjct: 1444 WGDACDLCPS 1453
>MTCU_HELPO (P55947) Copper-metallothionein (Cu-MT)| Length = 64 Score = 29.3 bits (64), Expect = 9.3 Identities = 15/55 (27%), Positives = 18/55 (32%) Frame = -3 Query: 471 CSHATKDQDAFQGHRCPCGYKIHRPDVHGPGLSCQCIRCDPVHCAWTKCRPRSVC 307 C A G+ C CG C C RC HC+ C+ S C Sbjct: 7 CGGACNSNPCSCGNDCKCG------------AGCNCDRCSSCHCSNDDCKCGSQC 49
>SYFB_CHLTE (Q8KEF9) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 810 Score = 29.3 bits (64), Expect = 9.3 Identities = 17/39 (43%), Positives = 20/39 (51%) Frame = +3 Query: 204 PALVVHTLRRRDDLRNRKVHIVSVADAGSDAAEPSKRSV 320 PA + L + D R R V I V D G+ EPS RSV Sbjct: 732 PAQRLIDLAKASDPRVRSVRIFDVFDRGTTQGEPSTRSV 770
>PTPRF_HUMAN (P10586) Receptor-type tyrosine-protein phosphatase F precursor (EC| 3.1.3.48) (LAR protein) (Leukocyte antigen related) Length = 1897 Score = 29.3 bits (64), Expect = 9.3 Identities = 23/75 (30%), Positives = 33/75 (44%) Frame = +3 Query: 138 VCSNRWSAEVRLACGSEATVPHPALVVHTLRRRDDLRNRKVHIVSVADAGSDAAEPSKRS 317 +C + S VR++ VP PA D RN + SVA D + + Sbjct: 604 MCVSMGSTTVRVSW-----VPPPA----------DSRNGVITQYSVAHEAVDGEDRGRHV 648 Query: 318 VDGILSKHSAQDRIG 362 VDGI +HS+ D +G Sbjct: 649 VDGISREHSSWDLVG 663 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,736,949 Number of Sequences: 219361 Number of extensions: 1846448 Number of successful extensions: 5511 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 5112 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5509 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5367617986 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
