| Clone Name | rbags12i16 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK071371.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023097L09, full insert sequence Length = 1930 Score = 281 bits (142), Expect = 1e-72 Identities = 352/422 (83%) Strand = Plus / Minus Query: 154 ggtcagcggaagtccggctggcctgtggaagtgaggcaacggtgccacatcctgcccttg 213 |||||| |||||||||| ||||| |||||||||||||| |||||||||||||||| ||| Sbjct: 1680 ggtcagtggaagtccggttggccagtggaagtgaggcagcggtgccacatcctgctgttg 1621 Query: 214 tggttcacacgcttcggcgccgtgatgacttgcgtaaccggaaggtacacatagtgagtg 273 ||||||| ||||| || |||||||||| || | ||| ||| | | ||||| ||| Sbjct: 1620 gggttcacgcgctttggttttgtgatgacttctgtgatcgggaggaaagcgtagtgcgtg 1561 Query: 274 ttgcagatgcaggaagtgatgccgctgaacccagcaaacgctccgtggacggcattttgt 333 ||||| || | || ||||| || |||||||| ||||| ||||| || || ||||||||| Sbjct: 1560 ttgcaaataccagatgtgataccactgaacccggcaaaggctccatgaacagcattttgt 1501 Query: 334 ccaagcacagtgcacaggatcgcatcggatgcattggcacgacaagcccggaccatgtac 393 ||||| |||||||||| ||| ||||| |||||||| |||||||| ||||||||||| || Sbjct: 1500 ccaagtacagtgcacaagatagcatcagatgcattcgcacgacaggcccggaccatatat 1441 Query: 394 gtcgggtcgatgtattttatatccgcatggacaccgatgcccttgaaatgcgtcttgatc 453 ||||| || |||||||||| ||| || | ||||||||| |||||||||| |||| ||| Sbjct: 1440 gtcggatcaatgtattttacatcagctggaacaccgatgtccttgaaatgactcttaatc 1381 Query: 454 ttttgttgcatgtgaacaccaatgtcgctaagtattgcatttcctgatgcatcagttgcg 513 || ||||||||||| ||||||| ||| ||||||||| |||||||||||||||||||||| Sbjct: 1380 ttctgttgcatgtggacaccaaagtcactaagtattacatttcctgatgcatcagttgca 1321 Query: 514 cctgagttttgcagtaactcttgtcctgcagcctcagcaacacaaaccacacagaatccc 573 ||| ||||||||||| || || |||||| | ||||||||||||||||| || |||||| Sbjct: 1320 tttgatttttgcagtaaatcctgccctgcaccttcagcaacacaaaccacgcaaaatccc 1261 Query: 574 tt 575 || Sbjct: 1260 tt 1259
>ref|XM_482597.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1608 Score = 270 bits (136), Expect = 5e-69 Identities = 301/356 (84%) Strand = Plus / Minus Query: 169 ggctggcctgtggaagtgaggcaacggtgccacatcctgcccttgtggttcacacgcttc 228 |||||||| ||||| || |||||||||||||||||||||| || ||||||| |||||| Sbjct: 1595 ggctggccagtggacgttaggcaacggtgccacatcctgctattagggttcacgcgcttc 1536 Query: 229 ggcgccgtgatgacttgcgtaaccggaaggtacacatagtgagtgttgcagatgcaggaa 288 || | || ||||||| || | || ||||| || ||||| |||||||||||||| ||| Sbjct: 1535 ggtactgttatgacttctgtgatggggaggtagacgtagtgcgtgttgcagatgcaagaa 1476 Query: 289 gtgatgccgctgaacccagcaaacgctccgtggacggcattttgtccaagcacagtgcac 348 |||||||| |||||||||||||| ||||| ||||| |||||||||||||| ||||||||| Sbjct: 1475 gtgatgccactgaacccagcaaatgctccatggacagcattttgtccaagtacagtgcac 1416 Query: 349 aggatcgcatcggatgcattggcacgacaagcccggaccatgtacgtcgggtcgatgtat 408 | || ||||| ||||||||||||||||| ||||| ||||| || ||||| || |||||| Sbjct: 1415 aaaattgcatcagatgcattggcacgacatgcccgaaccatatatgtcggatcaatgtat 1356 Query: 409 tttatatccgcatggacaccgatgcccttgaaatgcgtcttgatcttttgttgcatgtga 468 |||| ||| ||| | ||||| ||| ||||||||||| |||| ||||| |||||||| ||| Sbjct: 1355 tttacatcagcaggaacaccaatgtccttgaaatgcatcttaatcttctgttgcatatga 1296 Query: 469 acaccaatgtcgctaagtattgcatttcctgatgcatcagttgcgcctgagttttg 524 ||||| ||||| |||||||| ||||||| |||||||| ||||| ||||| ||||| Sbjct: 1295 acaccgatgtcactaagtatcacatttccagatgcatctgttgcacctgatttttg 1240 Score = 67.9 bits (34), Expect = 4e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 534 ttgtcctgcagcctcagcaacacaaaccacacagaatcccttgttcttta 583 |||||||||||| |||||||||||||| ||||||||||| ||| |||||| Sbjct: 1212 ttgtcctgcagcttcagcaacacaaacaacacagaatcctttggtcttta 1163
>gb|BT024065.1| Zea mays clone EL01N0446H04 mRNA sequence Length = 1930 Score = 188 bits (95), Expect = 1e-44 Identities = 239/287 (83%) Strand = Plus / Minus Query: 289 gtgatgccgctgaacccagcaaacgctccgtggacggcattttgtccaagcacagtgcac 348 |||||||| |||||||||||||| ||||| ||||| |||||||| ||||| || | ||| Sbjct: 1563 gtgatgccactgaacccagcaaatgctccatggacagcattttgcccaagtacggggcaa 1504 Query: 349 aggatcgcatcggatgcattggcacgacaagcccggaccatgtacgtcgggtcgatgtat 408 || || ||||| |||||||| || || || ||||| ||||| || || || || |||||| Sbjct: 1503 agaatagcatcagatgcatttgcccggcaggcccgaaccatatatgttggatcaatgtat 1444 Query: 409 tttatatccgcatggacaccgatgcccttgaaatgcgtcttgatcttttgttgcatgtga 468 |||| ||| || | ||||||||| ||||||||||| |||||||||| || |||||||| Sbjct: 1443 tttagatcagcgggaacaccgatgtccttgaaatgcttcttgatcttctgctgcatgtgg 1384 Query: 469 acaccaatgtcgctaagtattgcatttcctgatgcatcagttgcgcctgagttttgcagt 528 ||||||| ||| |||||||| |||||||||| || |||||||| ||| ||||||||| Sbjct: 1383 acaccaaagtcactaagtatcacatttcctgaagcgtcagttgcatttgatttttgcagt 1324 Query: 529 aactcttgtcctgcagcctcagcaacacaaaccacacagaatccctt 575 || || || |||||| | |||||||||||||||||||| |||||||| Sbjct: 1323 aaatcctgccctgcaccttcagcaacacaaaccacacaaaatccctt 1277 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 161 ggaagtccggctggcctgtggaagtgaggcaacggtgccacatcctgc 208 ||||||| |||||||| ||||| |||||||| ||||||||||| |||| Sbjct: 1691 ggaagtctggctggccagtggatgtgaggcagcggtgccacattctgc 1644
>gb|AY105749.1| Zea mays PCO086034 mRNA sequence Length = 678 Score = 151 bits (76), Expect = 3e-33 Identities = 274/340 (80%) Strand = Plus / Minus Query: 161 ggaagtccggctggcctgtggaagtgaggcaacggtgccacatcctgcccttgtggttca 220 ||||||| |||||||| ||||| |||||||| ||||||||||| |||| ||| |||| | Sbjct: 353 ggaagtctggctggccagtggatgtgaggcagcggtgccacattctgctgttggggttga 294 Query: 221 cacgcttcggcgccgtgatgacttgcgtaaccggaaggtacacatagtgagtgttgcaga 280 | |||| || | || ||||| | || | |||||||| ||||| || |||||||| | Sbjct: 293 cgtgctttggtgttgtaatgacctctgtgatgggaaggtagacataatgtgtgttgcaaa 234 Query: 281 tgcaggaagtgatgccgctgaacccagcaaacgctccgtggacggcattttgtccaagca 340 | || |||||||| |||||||||||||| ||||| ||||| |||||||| ||||| | Sbjct: 233 cacctgacgtgatgccactgaacccagcaaatgctccatggacagcattttgcccaagta 174 Query: 341 cagtgcacaggatcgcatcggatgcattggcacgacaagcccggaccatgtacgtcgggt 400 | ||||| || || ||||| |||||||| || || || ||||| ||||| || || || | Sbjct: 173 cggtgcagagaatagcatcagatgcatttgcccggcaggcccgaaccatatatgttggat 114 Query: 401 cgatgtattttatatccgcatggacaccgatgcccttgaaatgcgtcttgatcttttgtt 460 | |||||||||| ||| || | ||||||||| ||||||||||| |||||||||| || | Sbjct: 113 caatgtattttagatcagcgggaacaccgatgtccttgaaatgcttcttgatcttctgct 54 Query: 461 gcatgtgaacaccaatgtcgctaagtattgcatttcctga 500 ||||||| ||||||| ||| |||||||| |||||||||| Sbjct: 53 gcatgtggacaccaaagtcactaagtatcacatttcctga 14
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 109 bits (55), Expect = 1e-20 Identities = 103/119 (86%) Strand = Plus / Plus Query: 325 gcattttgtccaagcacagtgcacaggatcgcatcggatgcattggcacgacaagcccgg 384 |||||||||||||| |||||||||| ||| ||||| |||||||| |||||||| |||||| Sbjct: 14816867 gcattttgtccaagtacagtgcacaagatagcatcagatgcattcgcacgacaggcccgg 14816926 Query: 385 accatgtacgtcgggtcgatgtattttatatccgcatggacaccgatgcccttgaaatg 443 ||||| || ||||| || |||||||||| ||| || | ||||||||| |||||||||| Sbjct: 14816927 accatatatgtcggatcaatgtattttacatcagctggaacaccgatgtccttgaaatg 14816985 Score = 83.8 bits (42), Expect = 6e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 457 tgttgcatgtgaacaccaatgtcgctaagtattgcatttcctgatgcatcagttgcgcct 516 ||||||||||| ||||||| ||| ||||||||| |||||||||||||||||||||| | Sbjct: 14817748 tgttgcatgtggacaccaaagtcactaagtattacatttcctgatgcatcagttgcattt 14817807 Query: 517 gagttttgcagtaa 530 || ||||||||||| Sbjct: 14817808 gatttttgcagtaa 14817821 Score = 83.8 bits (42), Expect = 6e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 154 ggtcagcggaagtccggctggcctgtggaagtgaggcaacggtgccacatcctgcccttg 213 |||||| |||||||||| ||||| |||||||||||||| |||||||||||||||| ||| Sbjct: 14816585 ggtcagtggaagtccggttggccagtggaagtgaggcagcggtgccacatcctgctgttg 14816644 Query: 214 tggttcacacgctt 227 ||||||| ||||| Sbjct: 14816645 gggttcacgcgctt 14816658 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 382 cggaccatgtacgtcgggtcgatgta 407 |||| ||||||||||||||||||||| Sbjct: 18358117 cggatcatgtacgtcgggtcgatgta 18358092 Score = 44.1 bits (22), Expect = 0.53 Identities = 34/38 (89%) Strand = Plus / Plus Query: 538 cctgcagcctcagcaacacaaaccacacagaatccctt 575 |||||| | ||||||||||||||||| || |||||||| Sbjct: 14817947 cctgcaccttcagcaacacaaaccacgcaaaatccctt 14817984
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 109 bits (55), Expect = 1e-20 Identities = 130/155 (83%) Strand = Plus / Plus Query: 169 ggctggcctgtggaagtgaggcaacggtgccacatcctgcccttgtggttcacacgcttc 228 |||||||| ||||| || |||||||||||||||||||||| || ||||||| |||||| Sbjct: 21317741 ggctggccagtggacgttaggcaacggtgccacatcctgctattagggttcacgcgcttc 21317800 Query: 229 ggcgccgtgatgacttgcgtaaccggaaggtacacatagtgagtgttgcagatgcaggaa 288 || | || ||||||| || | || ||||| || ||||| |||||||||||||| ||| Sbjct: 21317801 ggtactgttatgacttctgtgatggggaggtagacgtagtgcgtgttgcagatgcaagaa 21317860 Query: 289 gtgatgccgctgaacccagcaaacgctccgtggac 323 |||||||| |||||||||||||| ||||| ||||| Sbjct: 21317861 gtgatgccactgaacccagcaaatgctccatggac 21317895 Score = 107 bits (54), Expect = 4e-20 Identities = 111/130 (85%) Strand = Plus / Plus Query: 325 gcattttgtccaagcacagtgcacaggatcgcatcggatgcattggcacgacaagcccgg 384 |||||||||||||| |||||||||| || ||||| ||||||||||||||||| ||||| Sbjct: 21318019 gcattttgtccaagtacagtgcacaaaattgcatcagatgcattggcacgacatgcccga 21318078 Query: 385 accatgtacgtcgggtcgatgtattttatatccgcatggacaccgatgcccttgaaatgc 444 ||||| || ||||| || |||||||||| ||| ||| | ||||| ||| ||||||||||| Sbjct: 21318079 accatatatgtcggatcaatgtattttacatcagcaggaacaccaatgtccttgaaatgc 21318138 Query: 445 gtcttgatct 454 |||| |||| Sbjct: 21318139 atcttaatct 21318148 Score = 69.9 bits (35), Expect = 9e-09 Identities = 47/51 (92%) Strand = Plus / Plus Query: 533 cttgtcctgcagcctcagcaacacaaaccacacagaatcccttgttcttta 583 ||||||||||||| |||||||||||||| ||||||||||| ||| |||||| Sbjct: 21318589 cttgtcctgcagcttcagcaacacaaacaacacagaatcctttggtcttta 21318639
>dbj|AP005636.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0707C02 Length = 163609 Score = 109 bits (55), Expect = 1e-20 Identities = 103/119 (86%) Strand = Plus / Plus Query: 325 gcattttgtccaagcacagtgcacaggatcgcatcggatgcattggcacgacaagcccgg 384 |||||||||||||| |||||||||| ||| ||||| |||||||| |||||||| |||||| Sbjct: 102256 gcattttgtccaagtacagtgcacaagatagcatcagatgcattcgcacgacaggcccgg 102315 Query: 385 accatgtacgtcgggtcgatgtattttatatccgcatggacaccgatgcccttgaaatg 443 ||||| || ||||| || |||||||||| ||| || | ||||||||| |||||||||| Sbjct: 102316 accatatatgtcggatcaatgtattttacatcagctggaacaccgatgtccttgaaatg 102374 Score = 83.8 bits (42), Expect = 6e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 457 tgttgcatgtgaacaccaatgtcgctaagtattgcatttcctgatgcatcagttgcgcct 516 ||||||||||| ||||||| ||| ||||||||| |||||||||||||||||||||| | Sbjct: 103137 tgttgcatgtggacaccaaagtcactaagtattacatttcctgatgcatcagttgcattt 103196 Query: 517 gagttttgcagtaa 530 || ||||||||||| Sbjct: 103197 gatttttgcagtaa 103210 Score = 83.8 bits (42), Expect = 6e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 154 ggtcagcggaagtccggctggcctgtggaagtgaggcaacggtgccacatcctgcccttg 213 |||||| |||||||||| ||||| |||||||||||||| |||||||||||||||| ||| Sbjct: 101974 ggtcagtggaagtccggttggccagtggaagtgaggcagcggtgccacatcctgctgttg 102033 Query: 214 tggttcacacgctt 227 ||||||| ||||| Sbjct: 102034 gggttcacgcgctt 102047 Score = 44.1 bits (22), Expect = 0.53 Identities = 34/38 (89%) Strand = Plus / Plus Query: 538 cctgcagcctcagcaacacaaaccacacagaatccctt 575 |||||| | ||||||||||||||||| || |||||||| Sbjct: 103336 cctgcaccttcagcaacacaaaccacgcaaaatccctt 103373
>dbj|AP005784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0014G10 Length = 164147 Score = 109 bits (55), Expect = 1e-20 Identities = 103/119 (86%) Strand = Plus / Plus Query: 325 gcattttgtccaagcacagtgcacaggatcgcatcggatgcattggcacgacaagcccgg 384 |||||||||||||| |||||||||| ||| ||||| |||||||| |||||||| |||||| Sbjct: 25206 gcattttgtccaagtacagtgcacaagatagcatcagatgcattcgcacgacaggcccgg 25265 Query: 385 accatgtacgtcgggtcgatgtattttatatccgcatggacaccgatgcccttgaaatg 443 ||||| || ||||| || |||||||||| ||| || | ||||||||| |||||||||| Sbjct: 25266 accatatatgtcggatcaatgtattttacatcagctggaacaccgatgtccttgaaatg 25324 Score = 83.8 bits (42), Expect = 6e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 457 tgttgcatgtgaacaccaatgtcgctaagtattgcatttcctgatgcatcagttgcgcct 516 ||||||||||| ||||||| ||| ||||||||| |||||||||||||||||||||| | Sbjct: 26087 tgttgcatgtggacaccaaagtcactaagtattacatttcctgatgcatcagttgcattt 26146 Query: 517 gagttttgcagtaa 530 || ||||||||||| Sbjct: 26147 gatttttgcagtaa 26160 Score = 83.8 bits (42), Expect = 6e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 154 ggtcagcggaagtccggctggcctgtggaagtgaggcaacggtgccacatcctgcccttg 213 |||||| |||||||||| ||||| |||||||||||||| |||||||||||||||| ||| Sbjct: 24924 ggtcagtggaagtccggttggccagtggaagtgaggcagcggtgccacatcctgctgttg 24983 Query: 214 tggttcacacgctt 227 ||||||| ||||| Sbjct: 24984 gggttcacgcgctt 24997 Score = 44.1 bits (22), Expect = 0.53 Identities = 34/38 (89%) Strand = Plus / Plus Query: 538 cctgcagcctcagcaacacaaaccacacagaatccctt 575 |||||| | ||||||||||||||||| || |||||||| Sbjct: 26286 cctgcaccttcagcaacacaaaccacgcaaaatccctt 26323
>dbj|AP005159.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0016C11 Length = 170723 Score = 109 bits (55), Expect = 1e-20 Identities = 130/155 (83%) Strand = Plus / Plus Query: 169 ggctggcctgtggaagtgaggcaacggtgccacatcctgcccttgtggttcacacgcttc 228 |||||||| ||||| || |||||||||||||||||||||| || ||||||| |||||| Sbjct: 144018 ggctggccagtggacgttaggcaacggtgccacatcctgctattagggttcacgcgcttc 144077 Query: 229 ggcgccgtgatgacttgcgtaaccggaaggtacacatagtgagtgttgcagatgcaggaa 288 || | || ||||||| || | || ||||| || ||||| |||||||||||||| ||| Sbjct: 144078 ggtactgttatgacttctgtgatggggaggtagacgtagtgcgtgttgcagatgcaagaa 144137 Query: 289 gtgatgccgctgaacccagcaaacgctccgtggac 323 |||||||| |||||||||||||| ||||| ||||| Sbjct: 144138 gtgatgccactgaacccagcaaatgctccatggac 144172 Score = 107 bits (54), Expect = 4e-20 Identities = 111/130 (85%) Strand = Plus / Plus Query: 325 gcattttgtccaagcacagtgcacaggatcgcatcggatgcattggcacgacaagcccgg 384 |||||||||||||| |||||||||| || ||||| ||||||||||||||||| ||||| Sbjct: 144296 gcattttgtccaagtacagtgcacaaaattgcatcagatgcattggcacgacatgcccga 144355 Query: 385 accatgtacgtcgggtcgatgtattttatatccgcatggacaccgatgcccttgaaatgc 444 ||||| || ||||| || |||||||||| ||| ||| | ||||| ||| ||||||||||| Sbjct: 144356 accatatatgtcggatcaatgtattttacatcagcaggaacaccaatgtccttgaaatgc 144415 Query: 445 gtcttgatct 454 |||| |||| Sbjct: 144416 atcttaatct 144425 Score = 69.9 bits (35), Expect = 9e-09 Identities = 47/51 (92%) Strand = Plus / Plus Query: 533 cttgtcctgcagcctcagcaacacaaaccacacagaatcccttgttcttta 583 ||||||||||||| |||||||||||||| ||||||||||| ||| |||||| Sbjct: 144866 cttgtcctgcagcttcagcaacacaaacaacacagaatcctttggtcttta 144916
>dbj|AP004702.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0524F03 Length = 167696 Score = 109 bits (55), Expect = 1e-20 Identities = 130/155 (83%) Strand = Plus / Plus Query: 169 ggctggcctgtggaagtgaggcaacggtgccacatcctgcccttgtggttcacacgcttc 228 |||||||| ||||| || |||||||||||||||||||||| || ||||||| |||||| Sbjct: 17666 ggctggccagtggacgttaggcaacggtgccacatcctgctattagggttcacgcgcttc 17725 Query: 229 ggcgccgtgatgacttgcgtaaccggaaggtacacatagtgagtgttgcagatgcaggaa 288 || | || ||||||| || | || ||||| || ||||| |||||||||||||| ||| Sbjct: 17726 ggtactgttatgacttctgtgatggggaggtagacgtagtgcgtgttgcagatgcaagaa 17785 Query: 289 gtgatgccgctgaacccagcaaacgctccgtggac 323 |||||||| |||||||||||||| ||||| ||||| Sbjct: 17786 gtgatgccactgaacccagcaaatgctccatggac 17820 Score = 107 bits (54), Expect = 4e-20 Identities = 111/130 (85%) Strand = Plus / Plus Query: 325 gcattttgtccaagcacagtgcacaggatcgcatcggatgcattggcacgacaagcccgg 384 |||||||||||||| |||||||||| || ||||| ||||||||||||||||| ||||| Sbjct: 17944 gcattttgtccaagtacagtgcacaaaattgcatcagatgcattggcacgacatgcccga 18003 Query: 385 accatgtacgtcgggtcgatgtattttatatccgcatggacaccgatgcccttgaaatgc 444 ||||| || ||||| || |||||||||| ||| ||| | ||||| ||| ||||||||||| Sbjct: 18004 accatatatgtcggatcaatgtattttacatcagcaggaacaccaatgtccttgaaatgc 18063 Query: 445 gtcttgatct 454 |||| |||| Sbjct: 18064 atcttaatct 18073 Score = 69.9 bits (35), Expect = 9e-09 Identities = 47/51 (92%) Strand = Plus / Plus Query: 533 cttgtcctgcagcctcagcaacacaaaccacacagaatcccttgttcttta 583 ||||||||||||| |||||||||||||| ||||||||||| ||| |||||| Sbjct: 18514 cttgtcctgcagcttcagcaacacaaacaacacagaatcctttggtcttta 18564
>gb|BT018334.1| Zea mays clone EL01T0402D11.c mRNA sequence Length = 655 Score = 107 bits (54), Expect = 4e-20 Identities = 231/290 (79%) Strand = Plus / Minus Query: 161 ggaagtccggctggcctgtggaagtgaggcaacggtgccacatcctgcccttgtggttca 220 ||||||| |||||||| ||||| |||||||| ||||||||||| |||| ||| |||| | Sbjct: 298 ggaagtctggctggccagtggatgtgaggcagcggtgccacattctgctgttggggttga 239 Query: 221 cacgcttcggcgccgtgatgacttgcgtaaccggaaggtacacatagtgagtgttgcaga 280 | |||| || | || ||||| | || | |||||||| ||||| || |||||||| | Sbjct: 238 cgtgctttggtgttgtaatgacctctgtgatgggaaggtagacataatgtgtgttgcaaa 179 Query: 281 tgcaggaagtgatgccgctgaacccagcaaacgctccgtggacggcattttgtccaagca 340 | || |||||||| |||||||||||||| ||||| ||||| |||||||| ||||| | Sbjct: 178 cacctgacgtgatgccactgaacccagcaaatgctccatggacagcattttgcccaagta 119 Query: 341 cagtgcacaggatcgcatcggatgcattggcacgacaagcccggaccatgtacgtcgggt 400 | ||||| || || ||||| |||||||| || || || ||||| ||||| || || || | Sbjct: 118 cggtgcaaagaatagcatcagatgcatttgcccggcaggcccgaaccatatatgttggat 59 Query: 401 cgatgtattttatatccgcatggacaccgatgcccttgaaatgcgtcttg 450 | |||||||||| ||| || | ||||||||| ||||||||||| ||||| Sbjct: 58 caatgtattttagatcagcgggaacaccgatgtccttgaaatgcttcttg 9
>ref|NM_196416.1| Oryza sativa (japonica cultivar-group) putative pyrophosphate--fructose-6-phosphate 1-phosphotransferase (OSJNBa0060A14.6), mRNA Length = 1473 Score = 91.7 bits (46), Expect = 3e-15 Identities = 103/122 (84%) Strand = Plus / Minus Query: 271 gtgttgcagatgcaggaagtgatgccgctgaacccagcaaacgctccgtggacggcattt 330 |||||||| |||| || |||||||| |||||||| ||||| || || || || ||||| Sbjct: 1358 gtgttgcatatgccggttgtgatgccactgaaccctgcaaatgcaccatgaacagcattc 1299 Query: 331 tgtccaagcacagtgcacaggatcgcatcggatgcattggcacgacaagcccggaccatg 390 || |||||||||||||| ||||| |||||||||||||||||||| ||| ||||||||| Sbjct: 1298 tgaccaagcacagtgcataggatggcatcggatgcattggcacgcacagcacggaccatg 1239 Query: 391 ta 392 || Sbjct: 1238 ta 1237
>dbj|AK065250.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002J06, full insert sequence Length = 2251 Score = 91.7 bits (46), Expect = 3e-15 Identities = 103/122 (84%) Strand = Plus / Minus Query: 271 gtgttgcagatgcaggaagtgatgccgctgaacccagcaaacgctccgtggacggcattt 330 |||||||| |||| || |||||||| |||||||| ||||| || || || || ||||| Sbjct: 1777 gtgttgcatatgccggttgtgatgccactgaaccctgcaaatgcaccatgaacagcattc 1718 Query: 331 tgtccaagcacagtgcacaggatcgcatcggatgcattggcacgacaagcccggaccatg 390 || |||||||||||||| ||||| |||||||||||||||||||| ||| ||||||||| Sbjct: 1717 tgaccaagcacagtgcataggatggcatcggatgcattggcacgcacagcacggaccatg 1658 Query: 391 ta 392 || Sbjct: 1657 ta 1656
>gb|AC021893.18|AC021893 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0060A14, from chromosome 10, complete sequence Length = 151343 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 325 gcattttgtccaagcacagtgcacaggatcgcatcggatgcattggcacgacaagcccgg 384 ||||| || |||||||||||||| ||||| |||||||||||||||||||| ||| ||| Sbjct: 26675 gcattctgaccaagcacagtgcataggatggcatcggatgcattggcacgcacagcacgg 26734 Query: 385 accatgta 392 |||||||| Sbjct: 26735 accatgta 26742
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 325 gcattttgtccaagcacagtgcacaggatcgcatcggatgcattggcacgacaagcccgg 384 ||||| || |||||||||||||| ||||| |||||||||||||||||||| ||| ||| Sbjct: 13334298 gcattctgaccaagcacagtgcataggatggcatcggatgcattggcacgcacagcacgg 13334357 Query: 385 accatgta 392 |||||||| Sbjct: 13334358 accatgta 13334365
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 325 gcattttgtccaagcacagtgcacaggatcgcatcggatgcattggcacgacaagcccgg 384 ||||| || |||||||||||||| ||||| |||||||||||||||||||| ||| ||| Sbjct: 13341638 gcattctgaccaagcacagtgcataggatggcatcggatgcattggcacgcacagcacgg 13341697 Query: 385 accatgta 392 |||||||| Sbjct: 13341698 accatgta 13341705
>gb|AC165177.2| Zea mays clone ZMMBBb-188L18, complete sequence Length = 137852 Score = 67.9 bits (34), Expect = 4e-08 Identities = 106/130 (81%) Strand = Plus / Plus Query: 325 gcattttgtccaagcacagtgcacaggatcgcatcggatgcattggcacgacaagcccgg 384 |||||||| ||||| || ||||| || || ||||| |||||||| || || || ||||| Sbjct: 11243 gcattttgcccaagtacggtgcagagaatagcatcagatgcatttgcccggcaggcccga 11302 Query: 385 accatgtacgtcgggtcgatgtattttatatccgcatggacaccgatgcccttgaaatgc 444 ||||| || || || || |||||||||| ||| || | ||||||||| ||||||||||| Sbjct: 11303 accatatatgttggatcaatgtattttagatcagcgggaacaccgatgtccttgaaatgc 11362 Query: 445 gtcttgatct 454 ||||||||| Sbjct: 11363 ttcttgatct 11372 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 161 ggaagtccggctggcctgtggaagtgaggcaacggtgccacatcctgc 208 ||||||| |||||||| ||||| |||||||| ||||||||||| |||| Sbjct: 10989 ggaagtctggctggccagtggatgtgaggcagcggtgccacattctgc 11036 Score = 54.0 bits (27), Expect = 5e-04 Identities = 60/71 (84%) Strand = Plus / Plus Query: 460 tgcatgtgaacaccaatgtcgctaagtattgcatttcctgatgcatcagttgcgcctgag 519 |||||||| ||||||| ||| |||||||| |||||||||| || |||||||| ||| Sbjct: 14858 tgcatgtggacaccaaagtcactaagtatcacatttcctgaagcgtcagttgcatttgat 14917 Query: 520 ttttgcagtaa 530 ||||||||||| Sbjct: 14918 ttttgcagtaa 14928 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Plus Query: 538 cctgcagcctcagcaacacaaaccacacagaatccctt 575 |||||| | |||||||||||||||||||| |||||||| Sbjct: 15045 cctgcaccttcagcaacacaaaccacacaaaatccctt 15082
>gb|AC165267.2| Zea mays clone ZMMBBb-151F20, complete sequence Length = 115478 Score = 67.9 bits (34), Expect = 4e-08 Identities = 106/130 (81%) Strand = Plus / Minus Query: 325 gcattttgtccaagcacagtgcacaggatcgcatcggatgcattggcacgacaagcccgg 384 |||||||| ||||| || ||||| || || ||||| |||||||| || || || ||||| Sbjct: 14557 gcattttgcccaagtacggtgcagagaatagcatcagatgcatttgcccggcaggcccga 14498 Query: 385 accatgtacgtcgggtcgatgtattttatatccgcatggacaccgatgcccttgaaatgc 444 ||||| || || || || |||||||||| ||| || | ||||||||| ||||||||||| Sbjct: 14497 accatatatgttggatcaatgtattttagatcagcgggaacaccgatgtccttgaaatgc 14438 Query: 445 gtcttgatct 454 ||||||||| Sbjct: 14437 ttcttgatct 14428 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 161 ggaagtccggctggcctgtggaagtgaggcaacggtgccacatcctgc 208 ||||||| |||||||| ||||| |||||||| ||||||||||| |||| Sbjct: 14811 ggaagtctggctggccagtggatgtgaggcagcggtgccacattctgc 14764 Score = 54.0 bits (27), Expect = 5e-04 Identities = 60/71 (84%) Strand = Plus / Minus Query: 460 tgcatgtgaacaccaatgtcgctaagtattgcatttcctgatgcatcagttgcgcctgag 519 |||||||| ||||||| ||| |||||||| |||||||||| || |||||||| ||| Sbjct: 10942 tgcatgtggacaccaaagtcactaagtatcacatttcctgaagcgtcagttgcatttgat 10883 Query: 520 ttttgcagtaa 530 ||||||||||| Sbjct: 10882 ttttgcagtaa 10872 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 538 cctgcagcctcagcaacacaaaccacacagaatccctt 575 |||||| | |||||||||||||||||||| |||||||| Sbjct: 10755 cctgcaccttcagcaacacaaaccacacaaaatccctt 10718
>dbj|AP005633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0463G11 Length = 154188 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 382 cggaccatgtacgtcgggtcgatgta 407 |||| ||||||||||||||||||||| Sbjct: 72853 cggatcatgtacgtcgggtcgatgta 72828
>dbj|AP005392.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0463D04 Length = 145828 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 382 cggaccatgtacgtcgggtcgatgta 407 |||| ||||||||||||||||||||| Sbjct: 19991 cggatcatgtacgtcgggtcgatgta 19966
>dbj|AK109585.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-B02, full insert sequence Length = 1586 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 382 cggaccatgtacgtcgggtcgatgta 407 |||| ||||||||||||||||||||| Sbjct: 1191 cggatcatgtacgtcgggtcgatgta 1166
>gb|AC005028.2| Homo sapiens BAC clone GS1-539F22 from 7, complete sequence Length = 189279 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 520 ttttgcagtaactcttgtcct 540 ||||||||||||||||||||| Sbjct: 36076 ttttgcagtaactcttgtcct 36056
>emb|BX679663.13| Zebrafish DNA sequence from clone DKEYP-79D4 in linkage group 6, complete sequence Length = 20946 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 46 acaacttaactgattacacaa 66 ||||||||||||||||||||| Sbjct: 14666 acaacttaactgattacacaa 14686
>gb|AC142328.1| Pan troglodytes BAC clone RP43-24E4 from 7, complete sequence Length = 192006 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 520 ttttgcagtaactcttgtcct 540 ||||||||||||||||||||| Sbjct: 144682 ttttgcagtaactcttgtcct 144702
>ref|XM_421472.1| PREDICTED: Gallus gallus similar to KIAA1344 protein (LOC423584), mRNA Length = 3760 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 329 tttgtccaagcacagtgcacagga 352 |||||||||||| ||||||||||| Sbjct: 1842 tttgtccaagcagagtgcacagga 1865
>gb|AC113957.8| Mus musculus chromosome 15, clone RP23-452M1, complete sequence Length = 168824 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 447 cttgatcttttgttgcatgtgaac 470 |||||||||||| ||||||||||| Sbjct: 96002 cttgatcttttgatgcatgtgaac 96025
>emb|AL358532.11| Human DNA sequence from clone RP11-186O14 on chromosome 10 Contains the LIPF gene for gastric lipase, the genes for two novel ab-hydrolase associated lipase region domain containing proteins and a CHC1L (chromosome condensation 1-like RCC1-like G exchanging factor RLG) pseudogene, complete sequence Length = 161826 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 566 agaatcccttgttctttatt 585 |||||||||||||||||||| Sbjct: 39613 agaatcccttgttctttatt 39632
>emb|AL356430.19| Human DNA sequence from clone RP11-467B13 on chromosome 13 Contains part of the NBEA gene for neurobeachin (BCL8B FLJ10197 KIAA1544) and a pseudogene similar to part og a noveln proteon (KIAA1925), complete sequence Length = 170885 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 ttaaactgaacaacttaact 56 |||||||||||||||||||| Sbjct: 166814 ttaaactgaacaacttaact 166795
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 cccagcaaacgctccgtgga 322 |||||||||||||||||||| Sbjct: 1900850 cccagcaaacgctccgtgga 1900831
>gb|AC104299.2| Homo sapiens chromosome 3 clone RP11-129K20, complete sequence Length = 181444 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 ttaaactgaacaacttaact 56 |||||||||||||||||||| Sbjct: 51284 ttaaactgaacaacttaact 51265
>gb|AC009785.8| Homo sapiens chromosome 7 clone RP11-198E23, complete sequence Length = 179145 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 239 tgacttgcgtaaccggaaggtaca 262 |||||||||||||||||| ||||| Sbjct: 68483 tgacttgcgtaaccggaaagtaca 68460
>gb|AC087633.5| Homo sapiens chromosome 15, clone RP11-255M2, complete sequence Length = 179163 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 aaactgaacaacttaactga 58 |||||||||||||||||||| Sbjct: 126236 aaactgaacaacttaactga 126255
>gb|AC008043.5| Drosophila melanogaster, chromosome 3R, region 94A-94A, BAC clone BACR05A08, complete sequence Length = 169581 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 579 ctttattaactgctcgaggt 598 |||||||||||||||||||| Sbjct: 43447 ctttattaactgctcgaggt 43466
>emb|CR386454.1| Gallus gallus finished cDNA, clone ChEST234i5 Length = 928 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 329 tttgtccaagcacagtgcacagga 352 |||||||||||| ||||||||||| Sbjct: 770 tttgtccaagcagagtgcacagga 793
>gb|AE003738.3| Drosophila melanogaster chromosome 3R, section 76 of 118 of the complete sequence Length = 287397 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 579 ctttattaactgctcgaggt 598 |||||||||||||||||||| Sbjct: 26261 ctttattaactgctcgaggt 26280
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 556 caaaccacacagaatccctt 575 |||||||||||||||||||| Sbjct: 2900748 caaaccacacagaatccctt 2900729
>gb|AC158937.4| Mus musculus chromosome 3, clone RP23-290L18, complete sequence Length = 196087 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 ctggcctgtggaagtgaggc 190 |||||||||||||||||||| Sbjct: 875 ctggcctgtggaagtgaggc 894
>ref|XM_577934.1| PREDICTED: Rattus norvegicus similar to putative homeobox protein (LOC502453), mRNA Length = 2943 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 tgccacatcctgcccttgtg 215 |||||||||||||||||||| Sbjct: 966 tgccacatcctgcccttgtg 947
>ref|XM_577930.1| PREDICTED: Rattus norvegicus similar to Hypothetical protein MGC67567 (LOC502449), mRNA Length = 672 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 tgccacatcctgcccttgtg 215 |||||||||||||||||||| Sbjct: 453 tgccacatcctgcccttgtg 434
>gb|AY140591.1| HIV-1 isolate 97CIRMF70 from Gabon envelope glycoprotein (env) gene, partial cds Length = 609 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 549 agcaacacaaaccacacaga 568 |||||||||||||||||||| Sbjct: 376 agcaacacaaaccacacaga 395
>gb|AC011625.2|AC011625 Homo sapiens clone RP11-341C17 from 7q31, complete sequence Length = 188090 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 239 tgacttgcgtaaccggaaggtaca 262 |||||||||||||||||| ||||| Sbjct: 183263 tgacttgcgtaaccggaaagtaca 183240
>gb|AC115823.18| Mus musculus chromosome 5, clone RP23-422P4, complete sequence Length = 185311 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 548 cagcaacacaaaccacacagaatc 571 ||||| |||||||||||||||||| Sbjct: 161065 cagcaccacaaaccacacagaatc 161042
>gb|AC125007.9| Mus musculus chromosome 3, clone RP24-190F20, complete sequence Length = 149805 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 ctggcctgtggaagtgaggc 190 |||||||||||||||||||| Sbjct: 133852 ctggcctgtggaagtgaggc 133871
>emb|AL663004.3|OSJN00207 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0049I21, complete sequence Length = 141935 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 556 caaaccacacagaatccctt 575 |||||||||||||||||||| Sbjct: 32634 caaaccacacagaatccctt 32615 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,416,220 Number of Sequences: 3902068 Number of extensions: 4416220 Number of successful extensions: 79020 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 78771 Number of HSP's gapped (non-prelim): 245 length of query: 605 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 582 effective length of database: 17,143,297,704 effective search space: 9977399263728 effective search space used: 9977399263728 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)