ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags12i07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY606038.1| Oncorhynchus mykiss lectin mRNA, complete cds 38 4.6
2gb|AC123594.1| Oryza sativa (japonica cultivar-group) chromosome... 38 4.6
3gb|AC092749.1| Genomic sequence for Oryza sativa (japonica culti... 38 4.6
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.6
5emb|CT573508.2| Medicago truncatula chromosome 5 clone mth2-29p1... 38 4.6
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 38 4.6

>gb|AY606038.1| Oncorhynchus mykiss lectin mRNA, complete cds
          Length = 627

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 58 aactacatgagcaccgaga 76
          |||||||||||||||||||
Sbjct: 47 aactacatgagcaccgaga 65



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>gb|AC123594.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0078C13,
              complete sequence
          Length = 146538

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 5      aaggtaattgtacagacaagtag 27
              |||||||||||||| ||||||||
Sbjct: 121919 aaggtaattgtacatacaagtag 121897



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>gb|AC092749.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar
             Nipponbare clone OSJNBb0023M11, from chromosome 10,
             complete sequence
          Length = 138668

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 5     aaggtaattgtacagacaagtag 27
             |||||||||||||| ||||||||
Sbjct: 25381 aaggtaattgtacatacaagtag 25359



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 5        aaggtaattgtacagacaagtag 27
                |||||||||||||| ||||||||
Sbjct: 10105160 aaggtaattgtacatacaagtag 10105138



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>emb|CT573508.2| Medicago truncatula chromosome 5 clone mth2-29p15, COMPLETE SEQUENCE
          Length = 125647

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 77    atacaaggatattttatca 95
             |||||||||||||||||||
Sbjct: 24446 atacaaggatattttatca 24464



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 5        aaggtaattgtacagacaagtag 27
                |||||||||||||| ||||||||
Sbjct: 10111199 aaggtaattgtacatacaagtag 10111177


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 596,654
Number of Sequences: 3902068
Number of extensions: 596654
Number of successful extensions: 35280
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35254
Number of HSP's gapped (non-prelim): 26
length of query: 104
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 83
effective length of database: 17,151,101,840
effective search space: 1423541452720
effective search space used: 1423541452720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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