ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags12i02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EHD4_HUMAN (Q9H223) EH-domain-containing protein 4 (Hepatocellul... 114 2e-25
2EHD4_MOUSE (Q9EQP2) EH-domain-containing protein 4 (mPAST2) 113 4e-25
3EHD1_MOUSE (Q9WVK4) EH-domain-containing protein 1 (mPAST1) 112 1e-24
4EHD3_HUMAN (Q9NZN3) EH-domain-containing protein 3 112 1e-24
5EHD2_HUMAN (Q9NZN4) EH-domain-containing protein 2 111 2e-24
6EHD1_HUMAN (Q9H4M9) EH-domain-containing protein 1 (Testilin) (h... 111 2e-24
7EHD3_MOUSE (Q9QXY6) EH-domain-containing protein 3 111 2e-24
8SKPL_PSEAE (Q9HXY5) Skp-like protein precursor 31 3.5

>EHD4_HUMAN (Q9H223) EH-domain-containing protein 4 (Hepatocellular|
           carcinoma-associated protein 10/11)
          Length = 541

 Score =  114 bits (285), Expect = 2e-25
 Identities = 52/114 (45%), Positives = 80/114 (70%)
 Frame = -3

Query: 544 DLKDIPKKACDRRINEFVKRARAAKIHAYIIGHLKNQMPSMMGKAKAQQKLIDNLEDEFA 365
           D++ +P+KA  R++N+ +KRAR AK+HAYII +LK +MPS+ GK   +++LI  L + + 
Sbjct: 284 DIQSLPQKAAVRKLNDLIKRARLAKVHAYIISYLKKEMPSVFGKENKKRELISRLPEIYI 343

Query: 364 KVQREHHLPAGDFPYVEHFREALGGYSIDKFEKVKPKMIQAVDDMLGYDIPELL 203
           ++QRE+ + AGDFP V+  +E L  Y   KF  +KPK+I+AVD+ML   I  L+
Sbjct: 344 QLQREYQISAGDFPEVKAMQEQLENYDFTKFHSLKPKLIEAVDNMLSNKISPLM 397



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>EHD4_MOUSE (Q9EQP2) EH-domain-containing protein 4 (mPAST2)|
          Length = 541

 Score =  113 bits (283), Expect = 4e-25
 Identities = 52/114 (45%), Positives = 80/114 (70%)
 Frame = -3

Query: 544 DLKDIPKKACDRRINEFVKRARAAKIHAYIIGHLKNQMPSMMGKAKAQQKLIDNLEDEFA 365
           D++ +P+KA  R++N+ +KRAR AK+HAYII +LK +MP+M GK   +++LI  L + + 
Sbjct: 284 DIQSLPQKAAVRKLNDLIKRARLAKVHAYIISYLKKEMPNMFGKENKKRELIYRLPEIYV 343

Query: 364 KVQREHHLPAGDFPYVEHFREALGGYSIDKFEKVKPKMIQAVDDMLGYDIPELL 203
           ++QRE+ + AGDFP V+  +E L  Y   KF  +KPK+I+AVD+ML   I  L+
Sbjct: 344 QLQREYQISAGDFPEVKAMQEQLENYDFTKFHSLKPKLIEAVDNMLTNKISSLM 397



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>EHD1_MOUSE (Q9WVK4) EH-domain-containing protein 1 (mPAST1)|
          Length = 534

 Score =  112 bits (279), Expect = 1e-24
 Identities = 48/114 (42%), Positives = 78/114 (68%)
 Frame = -3

Query: 544 DLKDIPKKACDRRINEFVKRARAAKIHAYIIGHLKNQMPSMMGKAKAQQKLIDNLEDEFA 365
           D++ +P+ A  R++N+ +KRAR AK+HAYII  LK +MP++ GK   +++L++NL + + 
Sbjct: 281 DIQSLPRNAALRKLNDLIKRARLAKVHAYIISSLKKEMPNVFGKESKKKELVNNLGEIYQ 340

Query: 364 KVQREHHLPAGDFPYVEHFREALGGYSIDKFEKVKPKMIQAVDDMLGYDIPELL 203
           K++REH + +GDFP +   +E L      KF+ +KPK++  VDDML  DI  L+
Sbjct: 341 KIEREHQISSGDFPSLRKMQELLQTQDFSKFQALKPKLLDTVDDMLANDIARLM 394



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>EHD3_HUMAN (Q9NZN3) EH-domain-containing protein 3|
          Length = 546

 Score =  112 bits (279), Expect = 1e-24
 Identities = 46/114 (40%), Positives = 80/114 (70%)
 Frame = -3

Query: 544 DLKDIPKKACDRRINEFVKRARAAKIHAYIIGHLKNQMPSMMGKAKAQQKLIDNLEDEFA 365
           D++ +P+ A  R++N+ +KRAR AK+HAYII  LK +MPS+ GK   +++L++NL + + 
Sbjct: 281 DIQSLPRNAALRKLNDLIKRARLAKVHAYIISSLKKEMPSVFGKDNKKKELVNNLAEIYG 340

Query: 364 KVQREHHLPAGDFPYVEHFREALGGYSIDKFEKVKPKMIQAVDDMLGYDIPELL 203
           +++REH +  GDFP ++  ++ L      KF+ +K K+++ VDDML +DI +L+
Sbjct: 341 RIEREHQISPGDFPNLKRMQDQLQAQDFSKFQPLKSKLLEVVDDMLAHDIAQLM 394



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>EHD2_HUMAN (Q9NZN4) EH-domain-containing protein 2|
          Length = 543

 Score =  111 bits (277), Expect = 2e-24
 Identities = 51/118 (43%), Positives = 80/118 (67%)
 Frame = -3

Query: 544 DLKDIPKKACDRRINEFVKRARAAKIHAYIIGHLKNQMPSMMGKAKAQQKLIDNLEDEFA 365
           D++ +P+ A  R++N+ VKRAR  ++HAYII +LK +MPS+ GK   +++LI  L   FA
Sbjct: 281 DIQGLPRHAALRKLNDLVKRARLVRVHAYIISYLKKEMPSVFGKENKKKQLILKLPVIFA 340

Query: 364 KVQREHHLPAGDFPYVEHFREALGGYSIDKFEKVKPKMIQAVDDMLGYDIPELLKNFR 191
           K+Q EHH+  GDFP  +  +E L  +   KF  +KPK+++A+D+ML +DI +L+   R
Sbjct: 341 KIQLEHHISPGDFPDCQKMQELLMAHDFTKFHSLKPKLLEALDEMLTHDIAKLMPLLR 398



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>EHD1_HUMAN (Q9H4M9) EH-domain-containing protein 1 (Testilin) (hPAST1)|
          Length = 534

 Score =  111 bits (277), Expect = 2e-24
 Identities = 48/114 (42%), Positives = 77/114 (67%)
 Frame = -3

Query: 544 DLKDIPKKACDRRINEFVKRARAAKIHAYIIGHLKNQMPSMMGKAKAQQKLIDNLEDEFA 365
           D++ +P+ A  R++N+ +KRAR AK+HAYII  LK +MP++ GK   +++L++NL + + 
Sbjct: 281 DIQSLPRNAALRKLNDLIKRARLAKVHAYIISSLKKEMPNVFGKESKKKELVNNLGEIYQ 340

Query: 364 KVQREHHLPAGDFPYVEHFREALGGYSIDKFEKVKPKMIQAVDDMLGYDIPELL 203
           K++REH +  GDFP +   +E L      KF+ +KPK++  VDDML  DI  L+
Sbjct: 341 KIEREHQISPGDFPSLRKMQELLQTQDFSKFQALKPKLLDTVDDMLANDIARLM 394



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>EHD3_MOUSE (Q9QXY6) EH-domain-containing protein 3|
          Length = 535

 Score =  111 bits (277), Expect = 2e-24
 Identities = 46/114 (40%), Positives = 80/114 (70%)
 Frame = -3

Query: 544 DLKDIPKKACDRRINEFVKRARAAKIHAYIIGHLKNQMPSMMGKAKAQQKLIDNLEDEFA 365
           D++ +P+ A  R++N+ +KRAR AK+HAYII  LK +MPS+ GK   +++L++NL + + 
Sbjct: 281 DIQSLPRNAALRKLNDLIKRARLAKVHAYIISSLKKEMPSVFGKDTKKKELVNNLAEIYG 340

Query: 364 KVQREHHLPAGDFPYVEHFREALGGYSIDKFEKVKPKMIQAVDDMLGYDIPELL 203
           +++REH +  GDFP ++  ++ L      KF+ +K K+++ VDDML +DI +L+
Sbjct: 341 RIEREHQISPGDFPNLKKMQDQLQAQDFSKFQPLKSKLLEVVDDMLAHDIAQLM 394



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>SKPL_PSEAE (Q9HXY5) Skp-like protein precursor|
          Length = 168

 Score = 30.8 bits (68), Expect = 3.5
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
 Frame = -3

Query: 439 NQMPSMMGKAKA-QQKLIDN----LEDEFAKVQREHHLPAGDFPYV-EHFREALGGYSID 278
           N++ ++   AKA Q KL+ N     + +  K + +    A DF +  +   E+      D
Sbjct: 57  NKLKNLERDAKALQDKLVSNGSKMSQGDREKAELDFKQKARDFQFQSKELNESKAAADRD 116

Query: 277 KFEKVKPKMIQAVDDML---GYDI 215
             +K+KPK+ QAV++ +   GYD+
Sbjct: 117 MLKKLKPKLDQAVEETIKKGGYDM 140


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,057,953
Number of Sequences: 219361
Number of extensions: 1914248
Number of successful extensions: 5759
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5757
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 5972710590
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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