ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags12i01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR354563.13| Zebrafish DNA sequence from clone DKEY-210I1 in... 42 0.17
2ref|XM_535858.2| PREDICTED: Canis familiaris similar to spermato... 38 2.6
3emb|AL353052.4| Human DNA sequence from clone RP5-865N13 on chro... 38 2.6
4emb|BX666059.13| Zebrafish DNA sequence from clone DKEYP-108D9 i... 38 2.6
5gb|AC121337.7| Homo sapiens 12 BAC RP11-96H19 (Roswell Park Canc... 38 2.6
6emb|BX649484.12| Zebrafish DNA sequence from clone CH211-197H24 ... 38 2.6
7gb|AC097359.2| Homo sapiens chromosome 3 clone RP11-259K5, compl... 38 2.6
8gb|AE009788.1|AE009788 Pyrobaculum aerophilum strain IM2 section... 38 2.6
9emb|BX088600.12| Zebrafish DNA sequence from clone DKEY-166M7 in... 38 2.6
10gb|AC136290.2| Homo sapiens chromosome 3 clone CTD-2104B13, comp... 38 2.6
11emb|AL954684.9| Mouse DNA sequence from clone RP24-352O9 on chro... 38 2.6
12dbj|AP006190.1| Homo sapiens genomic DNA, chromosome 3, clone:RP... 38 2.6
13dbj|AP000493.1| Homo sapiens genomic DNA, chromosome 3p21.3, clo... 38 2.6

>emb|CR354563.13| Zebrafish DNA sequence from clone DKEY-210I1 in linkage group 7,
             complete sequence
          Length = 147943

 Score = 42.1 bits (21), Expect = 0.17
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 22    atacattacatctacattaca 42
             |||||||||||||||||||||
Sbjct: 31606 atacattacatctacattaca 31626



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>ref|XM_535858.2| PREDICTED: Canis familiaris similar to spermatogenesis associated 16
            (LOC478689), mRNA
          Length = 2024

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 50   aactactgctgcaccaacg 68
            |||||||||||||||||||
Sbjct: 1878 aactactgctgcaccaacg 1896



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>emb|AL353052.4| Human DNA sequence from clone RP5-865N13 on chromosome 1 Contains two
             novel genes, complete sequence
          Length = 120045

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 29    acatctacattacaaaaga 47
             |||||||||||||||||||
Sbjct: 57145 acatctacattacaaaaga 57127



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>emb|BX666059.13| Zebrafish DNA sequence from clone DKEYP-108D9 in linkage group 15,
             complete sequence
          Length = 121448

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 22    atacattacatctacatta 40
             |||||||||||||||||||
Sbjct: 63992 atacattacatctacatta 63974



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>gb|AC121337.7| Homo sapiens 12 BAC RP11-96H19 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 110110

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 29    acatctacattacaaaaga 47
             |||||||||||||||||||
Sbjct: 26454 acatctacattacaaaaga 26472



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>emb|BX649484.12| Zebrafish DNA sequence from clone CH211-197H24 in linkage group 16,
              complete sequence
          Length = 196058

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 23     tacattacatctacattac 41
              |||||||||||||||||||
Sbjct: 167612 tacattacatctacattac 167594



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>gb|AC097359.2| Homo sapiens chromosome 3 clone RP11-259K5, complete sequence
          Length = 187127

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 20     ccatacattacatctacattaca 42
              ||||||||||||| |||||||||
Sbjct: 165254 ccatacattacatgtacattaca 165232



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>gb|AE009788.1|AE009788 Pyrobaculum aerophilum strain IM2 section 43 of 201 of the complete
            genome
          Length = 14715

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 25   cattacatctacattacaa 43
            |||||||||||||||||||
Sbjct: 7543 cattacatctacattacaa 7561



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>emb|BX088600.12| Zebrafish DNA sequence from clone DKEY-166M7 in linkage group 16,
             complete sequence
          Length = 192992

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 22    atacattacatctacatta 40
             |||||||||||||||||||
Sbjct: 46197 atacattacatctacatta 46215



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>gb|AC136290.2| Homo sapiens chromosome 3 clone CTD-2104B13, complete sequence
          Length = 136961

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 20    ccatacattacatctacattaca 42
             ||||||||||||| |||||||||
Sbjct: 83936 ccatacattacatgtacattaca 83958



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>emb|AL954684.9| Mouse DNA sequence from clone RP24-352O9 on chromosome 2, complete
             sequence
          Length = 170478

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 28    tacatctacattacaaaag 46
             |||||||||||||||||||
Sbjct: 50219 tacatctacattacaaaag 50201



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>dbj|AP006190.1| Homo sapiens genomic DNA, chromosome 3, clone:RP11-145L6, complete
              sequence
          Length = 176082

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 20     ccatacattacatctacattaca 42
              ||||||||||||| |||||||||
Sbjct: 134672 ccatacattacatgtacattaca 134650



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>dbj|AP000493.1| Homo sapiens genomic DNA, chromosome 3p21.3, clone:301 to 308,
             anti-oncogene region, section 1/5
          Length = 200000

 Score = 38.2 bits (19), Expect = 2.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 20    ccatacattacatctacattaca 42
             ||||||||||||| |||||||||
Sbjct: 21045 ccatacattacatgtacattaca 21023


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 347,458
Number of Sequences: 3902068
Number of extensions: 347458
Number of successful extensions: 19249
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19231
Number of HSP's gapped (non-prelim): 18
length of query: 68
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 47
effective length of database: 17,151,101,840
effective search space: 806101786480
effective search space used: 806101786480
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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