| Clone Name | rbags12h20 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL161444.18| Human DNA sequence from clone RP11-312C2 on chromosome 9, complete sequence Length = 150563 Score = 38.2 bits (19), Expect = 1.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 29 cactgcaggctgctgcagc 47 ||||||||||||||||||| Sbjct: 68923 cactgcaggctgctgcagc 68905
>gb|BT015264.1| Drosophila melanogaster LD38535 full insert cDNA Length = 6356 Score = 36.2 bits (18), Expect = 6.2 Identities = 18/18 (100%) Strand = Plus / Plus Query: 31 ctgcaggctgctgcagcg 48 |||||||||||||||||| Sbjct: 3844 ctgcaggctgctgcagcg 3861
>gb|AC115022.11| Mus musculus chromosome 7, clone RP24-233J11, complete sequence Length = 150060 Score = 36.2 bits (18), Expect = 6.2 Identities = 18/18 (100%) Strand = Plus / Plus Query: 30 actgcaggctgctgcagc 47 |||||||||||||||||| Sbjct: 47241 actgcaggctgctgcagc 47258
>gb|AC131719.5| Mus musculus BAC clone RP23-151H15 from chromosome 19, complete sequence Length = 216902 Score = 36.2 bits (18), Expect = 6.2 Identities = 18/18 (100%) Strand = Plus / Minus Query: 27 cacactgcaggctgctgc 44 |||||||||||||||||| Sbjct: 2620 cacactgcaggctgctgc 2603
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 36.2 bits (18), Expect = 6.2 Identities = 18/18 (100%) Strand = Plus / Minus Query: 31 ctgcaggctgctgcagcg 48 |||||||||||||||||| Sbjct: 31010202 ctgcaggctgctgcagcg 31010185
>gb|BC043995.1| Xenopus laevis ACTN1 protein, mRNA (cDNA clone MGC:53955 IMAGE:5570582), complete cds Length = 3658 Score = 36.2 bits (18), Expect = 6.2 Identities = 18/18 (100%) Strand = Plus / Plus Query: 31 ctgcaggctgctgcagcg 48 |||||||||||||||||| Sbjct: 25 ctgcaggctgctgcagcg 42
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 36.2 bits (18), Expect = 6.2 Identities = 18/18 (100%) Strand = Plus / Plus Query: 29 cactgcaggctgctgcag 46 |||||||||||||||||| Sbjct: 4344666 cactgcaggctgctgcag 4344683
>emb|CT025605.11| Mouse DNA sequence from clone RP23-259D11 on chromosome 13, complete sequence Length = 188616 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 17 tttacatgcncacactgcagg 37 ||||||||| ||||||||||| Sbjct: 56045 tttacatgcacacactgcagg 56025
>gb|BC026910.1| Homo sapiens lipocalin 6, mRNA (cDNA clone IMAGE:4478857), with apparent retained intron Length = 2436 Score = 36.2 bits (18), Expect = 6.2 Identities = 18/18 (100%) Strand = Plus / Plus Query: 27 cacactgcaggctgctgc 44 |||||||||||||||||| Sbjct: 1307 cacactgcaggctgctgc 1324
>gb|AC125075.4| Mus musculus BAC clone RP23-468P13 from chromosome 19, complete sequence Length = 188709 Score = 36.2 bits (18), Expect = 6.2 Identities = 18/18 (100%) Strand = Plus / Minus Query: 27 cacactgcaggctgctgc 44 |||||||||||||||||| Sbjct: 151283 cacactgcaggctgctgc 151266
>emb|CR407590.7| Zebrafish DNA sequence from clone CH211-153N15 in linkage group 2, complete sequence Length = 176623 Score = 36.2 bits (18), Expect = 6.2 Identities = 18/18 (100%) Strand = Plus / Minus Query: 28 acactgcaggctgctgca 45 |||||||||||||||||| Sbjct: 163499 acactgcaggctgctgca 163482
>gb|AC079887.17| Oryza sativa (japonica cultivar-group) chromosome 3 BAC OSJNBa0040E01 genomic sequence, complete sequence Length = 168759 Score = 36.2 bits (18), Expect = 6.2 Identities = 18/18 (100%) Strand = Plus / Plus Query: 31 ctgcaggctgctgcagcg 48 |||||||||||||||||| Sbjct: 85862 ctgcaggctgctgcagcg 85879
>gb|AC161585.2| Mus musculus BAC clone RP24-506J9 from chromosome 13, complete sequence Length = 211181 Score = 36.2 bits (18), Expect = 6.2 Identities = 20/21 (95%) Strand = Plus / Minus Query: 17 tttacatgcncacactgcagg 37 ||||||||| ||||||||||| Sbjct: 12152 tttacatgcacacactgcagg 12132
>ref|NM_009289.1| Mus musculus STE20-like kinase (yeast) (Slk), mRNA Length = 4279 Score = 36.2 bits (18), Expect = 6.2 Identities = 18/18 (100%) Strand = Plus / Minus Query: 27 cacactgcaggctgctgc 44 |||||||||||||||||| Sbjct: 2021 cacactgcaggctgctgc 2004
>emb|AL355987.31| Human DNA sequence from clone RP11-216L13 on chromosome 9 Contains the 3' end of the gene for a novel protein similar to mouse pancreatitis-induced protein 49 (PIP49), the 5' end of a novel gene (FLJ30346), five novel genes (containing LOC158062, KIAA1984, FLJ35320, FLJ36901, FLJ30985, FLJ10101, FLJ37063 FLJ13045, FLJ40767), a nucleolin (NCL) pseudogene, the gene for a novel protein similar to mouse lipocalin 8 (EP17, Lcn5), a 13kD lysosomal H+ transporting ATPase V1 subunit G isoform 1 (ATP6V1G1) pseudogene, the gene for phosphohistidine phosphatase (PHP14), the gene for a novel protein similar to rat apical early endosomal glycoprotein (LOC252882), the EDF1 gene for endothelial differentiation-related factor 1 (MBF1, EDF-1), the 5' end of the TRAF2 gene for TNF receptor-associated factor 2 (TRAP, TRAP3) and ten CpG islands, complete sequence Length = 182003 Score = 36.2 bits (18), Expect = 6.2 Identities = 18/18 (100%) Strand = Plus / Minus Query: 27 cacactgcaggctgctgc 44 |||||||||||||||||| Sbjct: 17765 cacactgcaggctgctgc 17748
>emb|BX927108.10| Zebrafish DNA sequence from clone CH211-141H20 in linkage group 2, complete sequence Length = 117014 Score = 36.2 bits (18), Expect = 6.2 Identities = 18/18 (100%) Strand = Plus / Plus Query: 28 acactgcaggctgctgca 45 |||||||||||||||||| Sbjct: 15447 acactgcaggctgctgca 15464
>emb|AL832485.1|HSM803793 Homo sapiens mRNA; cDNA DKFZp686P2319 (from clone DKFZp686P2319) Length = 2275 Score = 36.2 bits (18), Expect = 6.2 Identities = 18/18 (100%) Strand = Plus / Plus Query: 27 cacactgcaggctgctgc 44 |||||||||||||||||| Sbjct: 1145 cacactgcaggctgctgc 1162
>gb|AY118541.1| Drosophila melanogaster LD27836 full insert cDNA Length = 3049 Score = 36.2 bits (18), Expect = 6.2 Identities = 18/18 (100%) Strand = Plus / Plus Query: 31 ctgcaggctgctgcagcg 48 |||||||||||||||||| Sbjct: 540 ctgcaggctgctgcagcg 557
>dbj|AK091788.1| Homo sapiens cDNA FLJ34469 fis, clone HLUNG2003331 Length = 2496 Score = 36.2 bits (18), Expect = 6.2 Identities = 18/18 (100%) Strand = Plus / Plus Query: 27 cacactgcaggctgctgc 44 |||||||||||||||||| Sbjct: 1392 cacactgcaggctgctgc 1409
>ref|NM_136158.2| Drosophila melanogaster CdGAPr CG10538-RA (CdGAPr), mRNA Length = 7552 Score = 36.2 bits (18), Expect = 6.2 Identities = 18/18 (100%) Strand = Plus / Plus Query: 31 ctgcaggctgctgcagcg 48 |||||||||||||||||| Sbjct: 3894 ctgcaggctgctgcagcg 3911
>dbj|AK029491.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4921503G23 product:serine/threonine kinase 2, full insert sequence Length = 2396 Score = 36.2 bits (18), Expect = 6.2 Identities = 18/18 (100%) Strand = Plus / Minus Query: 27 cacactgcaggctgctgc 44 |||||||||||||||||| Sbjct: 1883 cacactgcaggctgctgc 1866
>gb|AC005719.2|AC005719 Drosophila melanogaster, chromosome 2L, region 38A5-38B4, BAC clone BACR48M05, complete sequence Length = 188341 Score = 36.2 bits (18), Expect = 6.2 Identities = 18/18 (100%) Strand = Plus / Plus Query: 31 ctgcaggctgctgcagcg 48 |||||||||||||||||| Sbjct: 163725 ctgcaggctgctgcagcg 163742
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 36.2 bits (18), Expect = 6.2 Identities = 18/18 (100%) Strand = Plus / Minus Query: 31 ctgcaggctgctgcagcg 48 |||||||||||||||||| Sbjct: 31100725 ctgcaggctgctgcagcg 31100708
>gb|AF218776.1|AF218776 Drosophila melanogaster GTPase activating protein mRNA, complete cds Length = 7492 Score = 36.2 bits (18), Expect = 6.2 Identities = 18/18 (100%) Strand = Plus / Plus Query: 31 ctgcaggctgctgcagcg 48 |||||||||||||||||| Sbjct: 3865 ctgcaggctgctgcagcg 3882
>gb|AF112855.1|AF112855 Mus musculus Ste20-related kinase SMAK (SMAK) mRNA, complete cds Length = 5253 Score = 36.2 bits (18), Expect = 6.2 Identities = 18/18 (100%) Strand = Plus / Minus Query: 27 cacactgcaggctgctgc 44 |||||||||||||||||| Sbjct: 1905 cacactgcaggctgctgc 1888
>emb|AL772351.12| Mouse DNA sequence from clone RP24-199N10 on chromosome 4, complete sequence Length = 78426 Score = 36.2 bits (18), Expect = 6.2 Identities = 18/18 (100%) Strand = Plus / Plus Query: 31 ctgcaggctgctgcagcg 48 |||||||||||||||||| Sbjct: 4790 ctgcaggctgctgcagcg 4807
>gb|AE003664.3| Drosophila melanogaster chromosome 2L, section 73 of 83 of the complete sequence Length = 266287 Score = 36.2 bits (18), Expect = 6.2 Identities = 18/18 (100%) Strand = Plus / Minus Query: 31 ctgcaggctgctgcagcg 48 |||||||||||||||||| Sbjct: 46782 ctgcaggctgctgcagcg 46765
>dbj|AK122218.1| Mus musculus mRNA for mKIAA0204 protein Length = 5840 Score = 36.2 bits (18), Expect = 6.2 Identities = 18/18 (100%) Strand = Plus / Minus Query: 27 cacactgcaggctgctgc 44 |||||||||||||||||| Sbjct: 2357 cacactgcaggctgctgc 2340
>gb|BC064596.1| Homo sapiens lipocalin 10, mRNA (cDNA clone IMAGE:5755389) Length = 1941 Score = 36.2 bits (18), Expect = 6.2 Identities = 18/18 (100%) Strand = Plus / Plus Query: 27 cacactgcaggctgctgc 44 |||||||||||||||||| Sbjct: 789 cacactgcaggctgctgc 806
>gb|BC036875.1| Homo sapiens lipocalin 10, mRNA (cDNA clone IMAGE:5223389) Length = 1720 Score = 36.2 bits (18), Expect = 6.2 Identities = 18/18 (100%) Strand = Plus / Plus Query: 27 cacactgcaggctgctgc 44 |||||||||||||||||| Sbjct: 506 cacactgcaggctgctgc 523
>gb|BC046377.1| Homo sapiens lipocalin 10, mRNA (cDNA clone IMAGE:5762703) Length = 1961 Score = 36.2 bits (18), Expect = 6.2 Identities = 18/18 (100%) Strand = Plus / Plus Query: 27 cacactgcaggctgctgc 44 |||||||||||||||||| Sbjct: 830 cacactgcaggctgctgc 847
>gb|BC040963.1| Homo sapiens lipocalin 10, mRNA (cDNA clone IMAGE:5588100) Length = 3292 Score = 36.2 bits (18), Expect = 6.2 Identities = 18/18 (100%) Strand = Plus / Plus Query: 27 cacactgcaggctgctgc 44 |||||||||||||||||| Sbjct: 2149 cacactgcaggctgctgc 2166
>gb|AF039574.1|AF039574 Mus musculus serine/threonine protein kinase mRNA, complete cds Length = 4279 Score = 36.2 bits (18), Expect = 6.2 Identities = 18/18 (100%) Strand = Plus / Minus Query: 27 cacactgcaggctgctgc 44 |||||||||||||||||| Sbjct: 2021 cacactgcaggctgctgc 2004 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 288,576 Number of Sequences: 3902068 Number of extensions: 288576 Number of successful extensions: 73383 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73209 Number of HSP's gapped (non-prelim): 174 length of query: 48 length of database: 17,233,045,268 effective HSP length: 20 effective length of query: 28 effective length of database: 17,155,003,908 effective search space: 480340109424 effective search space used: 480340109424 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 18 (36.2 bits)