ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags12h20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL161444.18| Human DNA sequence from clone RP11-312C2 on chr... 38 1.6
2gb|BT015264.1| Drosophila melanogaster LD38535 full insert cDNA 36 6.2
3gb|AC115022.11| Mus musculus chromosome 7, clone RP24-233J11, co... 36 6.2
4gb|AC131719.5| Mus musculus BAC clone RP23-151H15 from chromosom... 36 6.2
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 36 6.2
6gb|BC043995.1| Xenopus laevis ACTN1 protein, mRNA (cDNA clone MG... 36 6.2
7emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 36 6.2
8emb|CT025605.11| Mouse DNA sequence from clone RP23-259D11 on ch... 36 6.2
9gb|BC026910.1| Homo sapiens lipocalin 6, mRNA (cDNA clone IMAGE:... 36 6.2
10gb|AC125075.4| Mus musculus BAC clone RP23-468P13 from chromosom... 36 6.2
11emb|CR407590.7| Zebrafish DNA sequence from clone CH211-153N15 i... 36 6.2
12gb|AC079887.17| Oryza sativa (japonica cultivar-group) chromosom... 36 6.2
13gb|AC161585.2| Mus musculus BAC clone RP24-506J9 from chromosome... 36 6.2
14ref|NM_009289.1| Mus musculus STE20-like kinase (yeast) (Slk), mRNA 36 6.2
15emb|AL355987.31| Human DNA sequence from clone RP11-216L13 on ch... 36 6.2
16emb|BX927108.10| Zebrafish DNA sequence from clone CH211-141H20 ... 36 6.2
17emb|AL832485.1|HSM803793 Homo sapiens mRNA; cDNA DKFZp686P2319 (... 36 6.2
18gb|AY118541.1| Drosophila melanogaster LD27836 full insert cDNA 36 6.2
19dbj|AK091788.1| Homo sapiens cDNA FLJ34469 fis, clone HLUNG2003331 36 6.2
20ref|NM_136158.2| Drosophila melanogaster CdGAPr CG10538-RA (CdGA... 36 6.2
21dbj|AK029491.1| Mus musculus adult male testis cDNA, RIKEN full-... 36 6.2
22gb|AC005719.2|AC005719 Drosophila melanogaster, chromosome 2L, r... 36 6.2
23dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 36 6.2
24gb|AF218776.1|AF218776 Drosophila melanogaster GTPase activating... 36 6.2
25gb|AF112855.1|AF112855 Mus musculus Ste20-related kinase SMAK (S... 36 6.2
26emb|AL772351.12| Mouse DNA sequence from clone RP24-199N10 on ch... 36 6.2
27gb|AE003664.3| Drosophila melanogaster chromosome 2L, section 73... 36 6.2
28dbj|AK122218.1| Mus musculus mRNA for mKIAA0204 protein 36 6.2
29gb|BC064596.1| Homo sapiens lipocalin 10, mRNA (cDNA clone IMAGE... 36 6.2
30gb|BC036875.1| Homo sapiens lipocalin 10, mRNA (cDNA clone IMAGE... 36 6.2
31gb|BC046377.1| Homo sapiens lipocalin 10, mRNA (cDNA clone IMAGE... 36 6.2
32gb|BC040963.1| Homo sapiens lipocalin 10, mRNA (cDNA clone IMAGE... 36 6.2
33gb|AF039574.1|AF039574 Mus musculus serine/threonine protein kin... 36 6.2

>emb|AL161444.18| Human DNA sequence from clone RP11-312C2 on chromosome 9, complete
             sequence
          Length = 150563

 Score = 38.2 bits (19), Expect = 1.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 29    cactgcaggctgctgcagc 47
             |||||||||||||||||||
Sbjct: 68923 cactgcaggctgctgcagc 68905



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>gb|BT015264.1| Drosophila melanogaster LD38535 full insert cDNA
          Length = 6356

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 31   ctgcaggctgctgcagcg 48
            ||||||||||||||||||
Sbjct: 3844 ctgcaggctgctgcagcg 3861



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>gb|AC115022.11| Mus musculus chromosome 7, clone RP24-233J11, complete sequence
          Length = 150060

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 30    actgcaggctgctgcagc 47
             ||||||||||||||||||
Sbjct: 47241 actgcaggctgctgcagc 47258



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>gb|AC131719.5| Mus musculus BAC clone RP23-151H15 from chromosome 19, complete
            sequence
          Length = 216902

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 27   cacactgcaggctgctgc 44
            ||||||||||||||||||
Sbjct: 2620 cacactgcaggctgctgc 2603



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                  
Query: 31       ctgcaggctgctgcagcg 48
                ||||||||||||||||||
Sbjct: 31010202 ctgcaggctgctgcagcg 31010185



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>gb|BC043995.1| Xenopus laevis ACTN1 protein, mRNA (cDNA clone MGC:53955
          IMAGE:5570582), complete cds
          Length = 3658

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                            
Query: 31 ctgcaggctgctgcagcg 48
          ||||||||||||||||||
Sbjct: 25 ctgcaggctgctgcagcg 42



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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 29      cactgcaggctgctgcag 46
               ||||||||||||||||||
Sbjct: 4344666 cactgcaggctgctgcag 4344683



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>emb|CT025605.11| Mouse DNA sequence from clone RP23-259D11 on chromosome 13, complete
             sequence
          Length = 188616

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                  
Query: 17    tttacatgcncacactgcagg 37
             ||||||||| |||||||||||
Sbjct: 56045 tttacatgcacacactgcagg 56025



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>gb|BC026910.1| Homo sapiens lipocalin 6, mRNA (cDNA clone IMAGE:4478857), with
            apparent retained intron
          Length = 2436

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 27   cacactgcaggctgctgc 44
            ||||||||||||||||||
Sbjct: 1307 cacactgcaggctgctgc 1324



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>gb|AC125075.4| Mus musculus BAC clone RP23-468P13 from chromosome 19, complete sequence
          Length = 188709

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 27     cacactgcaggctgctgc 44
              ||||||||||||||||||
Sbjct: 151283 cacactgcaggctgctgc 151266



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>emb|CR407590.7| Zebrafish DNA sequence from clone CH211-153N15 in linkage group 2,
              complete sequence
          Length = 176623

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 28     acactgcaggctgctgca 45
              ||||||||||||||||||
Sbjct: 163499 acactgcaggctgctgca 163482



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>gb|AC079887.17| Oryza sativa (japonica cultivar-group) chromosome 3 BAC OSJNBa0040E01
             genomic sequence, complete sequence
          Length = 168759

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 31    ctgcaggctgctgcagcg 48
             ||||||||||||||||||
Sbjct: 85862 ctgcaggctgctgcagcg 85879



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>gb|AC161585.2| Mus musculus BAC clone RP24-506J9 from chromosome 13, complete sequence
          Length = 211181

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                  
Query: 17    tttacatgcncacactgcagg 37
             ||||||||| |||||||||||
Sbjct: 12152 tttacatgcacacactgcagg 12132



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>ref|NM_009289.1| Mus musculus STE20-like kinase (yeast) (Slk), mRNA
          Length = 4279

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 27   cacactgcaggctgctgc 44
            ||||||||||||||||||
Sbjct: 2021 cacactgcaggctgctgc 2004



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>emb|AL355987.31| Human DNA sequence from clone RP11-216L13 on chromosome 9 Contains the
             3' end of the gene for a novel protein similar to mouse
             pancreatitis-induced protein 49  (PIP49), the 5' end of a
             novel gene (FLJ30346), five novel genes  (containing
             LOC158062, KIAA1984, FLJ35320, FLJ36901, FLJ30985,
             FLJ10101, FLJ37063 FLJ13045, FLJ40767), a nucleolin (NCL)
             pseudogene, the gene for a novel protein similar to mouse
             lipocalin 8 (EP17, Lcn5), a 13kD lysosomal H+ transporting
             ATPase V1 subunit G isoform 1 (ATP6V1G1) pseudogene, the
             gene for phosphohistidine phosphatase (PHP14), the gene
             for a novel protein similar to rat apical early endosomal
             glycoprotein (LOC252882), the EDF1 gene for endothelial
             differentiation-related factor 1 (MBF1, EDF-1), the 5' end
             of the TRAF2 gene for TNF receptor-associated factor 2
             (TRAP, TRAP3) and ten CpG islands, complete sequence
          Length = 182003

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 27    cacactgcaggctgctgc 44
             ||||||||||||||||||
Sbjct: 17765 cacactgcaggctgctgc 17748



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>emb|BX927108.10| Zebrafish DNA sequence from clone CH211-141H20 in linkage group 2,
             complete sequence
          Length = 117014

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 28    acactgcaggctgctgca 45
             ||||||||||||||||||
Sbjct: 15447 acactgcaggctgctgca 15464



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>emb|AL832485.1|HSM803793 Homo sapiens mRNA; cDNA DKFZp686P2319 (from clone DKFZp686P2319)
          Length = 2275

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 27   cacactgcaggctgctgc 44
            ||||||||||||||||||
Sbjct: 1145 cacactgcaggctgctgc 1162



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>gb|AY118541.1| Drosophila melanogaster LD27836 full insert cDNA
          Length = 3049

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 31  ctgcaggctgctgcagcg 48
           ||||||||||||||||||
Sbjct: 540 ctgcaggctgctgcagcg 557



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>dbj|AK091788.1| Homo sapiens cDNA FLJ34469 fis, clone HLUNG2003331
          Length = 2496

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 27   cacactgcaggctgctgc 44
            ||||||||||||||||||
Sbjct: 1392 cacactgcaggctgctgc 1409



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>ref|NM_136158.2| Drosophila melanogaster CdGAPr CG10538-RA (CdGAPr), mRNA
          Length = 7552

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 31   ctgcaggctgctgcagcg 48
            ||||||||||||||||||
Sbjct: 3894 ctgcaggctgctgcagcg 3911



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>dbj|AK029491.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4921503G23 product:serine/threonine kinase
            2, full insert sequence
          Length = 2396

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 27   cacactgcaggctgctgc 44
            ||||||||||||||||||
Sbjct: 1883 cacactgcaggctgctgc 1866



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>gb|AC005719.2|AC005719 Drosophila melanogaster, chromosome 2L, region 38A5-38B4, BAC clone
              BACR48M05, complete sequence
          Length = 188341

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 31     ctgcaggctgctgcagcg 48
              ||||||||||||||||||
Sbjct: 163725 ctgcaggctgctgcagcg 163742



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                  
Query: 31       ctgcaggctgctgcagcg 48
                ||||||||||||||||||
Sbjct: 31100725 ctgcaggctgctgcagcg 31100708



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>gb|AF218776.1|AF218776 Drosophila melanogaster GTPase activating protein mRNA, complete cds
          Length = 7492

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 31   ctgcaggctgctgcagcg 48
            ||||||||||||||||||
Sbjct: 3865 ctgcaggctgctgcagcg 3882



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>gb|AF112855.1|AF112855 Mus musculus Ste20-related kinase SMAK (SMAK) mRNA, complete cds
          Length = 5253

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 27   cacactgcaggctgctgc 44
            ||||||||||||||||||
Sbjct: 1905 cacactgcaggctgctgc 1888



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>emb|AL772351.12| Mouse DNA sequence from clone RP24-199N10 on chromosome 4, complete
            sequence
          Length = 78426

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 31   ctgcaggctgctgcagcg 48
            ||||||||||||||||||
Sbjct: 4790 ctgcaggctgctgcagcg 4807



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>gb|AE003664.3| Drosophila melanogaster chromosome 2L, section 73 of 83 of the complete
             sequence
          Length = 266287

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 31    ctgcaggctgctgcagcg 48
             ||||||||||||||||||
Sbjct: 46782 ctgcaggctgctgcagcg 46765



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>dbj|AK122218.1| Mus musculus mRNA for mKIAA0204 protein
          Length = 5840

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 27   cacactgcaggctgctgc 44
            ||||||||||||||||||
Sbjct: 2357 cacactgcaggctgctgc 2340



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>gb|BC064596.1| Homo sapiens lipocalin 10, mRNA (cDNA clone IMAGE:5755389)
          Length = 1941

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 27  cacactgcaggctgctgc 44
           ||||||||||||||||||
Sbjct: 789 cacactgcaggctgctgc 806



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>gb|BC036875.1| Homo sapiens lipocalin 10, mRNA (cDNA clone IMAGE:5223389)
          Length = 1720

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 27  cacactgcaggctgctgc 44
           ||||||||||||||||||
Sbjct: 506 cacactgcaggctgctgc 523



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>gb|BC046377.1| Homo sapiens lipocalin 10, mRNA (cDNA clone IMAGE:5762703)
          Length = 1961

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 27  cacactgcaggctgctgc 44
           ||||||||||||||||||
Sbjct: 830 cacactgcaggctgctgc 847



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>gb|BC040963.1| Homo sapiens lipocalin 10, mRNA (cDNA clone IMAGE:5588100)
          Length = 3292

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 27   cacactgcaggctgctgc 44
            ||||||||||||||||||
Sbjct: 2149 cacactgcaggctgctgc 2166



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>gb|AF039574.1|AF039574 Mus musculus serine/threonine protein kinase mRNA, complete cds
          Length = 4279

 Score = 36.2 bits (18), Expect = 6.2
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 27   cacactgcaggctgctgc 44
            ||||||||||||||||||
Sbjct: 2021 cacactgcaggctgctgc 2004


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 288,576
Number of Sequences: 3902068
Number of extensions: 288576
Number of successful extensions: 73383
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73209
Number of HSP's gapped (non-prelim): 174
length of query: 48
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 28
effective length of database: 17,155,003,908
effective search space: 480340109424
effective search space used: 480340109424
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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