ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags12h13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ENGD_BACSU (P37518) GTP-dependent nucleic acid-binding protein engD 38 0.007
2ENGD_PASMU (Q9CP90) GTP-dependent nucleic acid-binding protein engD 36 0.022
3ENGD_HAEIN (P44681) GTP-dependent nucleic acid-binding protein engD 36 0.022
4ENGD_HAEDU (Q7VMI2) GTP-dependent nucleic acid-binding protein engD 36 0.022
5ENGD_SHIFL (P0ABU4) GTP-dependent nucleic acid-binding protein engD 32 0.31
6ENGD_ECOLI (P0ABU2) GTP-dependent nucleic acid-binding protein engD 32 0.31
7ENGD_ECO57 (P0ABU3) GTP-dependent nucleic acid-binding protein engD 32 0.31
8Y024_MYCGE (P47270) Probable GTP-binding protein MG024 32 0.54
9PLK1_CAEEL (P34331) Serine/threonine-protein kinase plk-1 (EC 2.... 29 2.7
10ENGD_BUCAI (P57288) GTP-dependent nucleic acid-binding protein engD 29 2.7
11YCHF_CAEEL (P91917) Putative GTP-binding protein W08E3.3 29 3.5
12ENGD_BUCBP (Q89AR6) GTP-dependent nucleic acid-binding protein engD 28 7.7

>ENGD_BACSU (P37518) GTP-dependent nucleic acid-binding protein engD|
          Length = 366

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 16/23 (69%), Positives = 20/23 (86%)
 Frame = -3

Query: 249 QMRLEGKEYIVQEGDVXXCRFNV 181
           ++RLEGKEY+VQ+GDV   RFNV
Sbjct: 344 KVRLEGKEYVVQDGDVIHFRFNV 366



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>ENGD_PASMU (Q9CP90) GTP-dependent nucleic acid-binding protein engD|
          Length = 362

 Score = 36.2 bits (82), Expect = 0.022
 Identities = 16/21 (76%), Positives = 18/21 (85%)
 Frame = -3

Query: 243 RLEGKEYIVQEGDVXXCRFNV 181
           RLEGK+YIVQ+GDV   RFNV
Sbjct: 342 RLEGKDYIVQDGDVMHFRFNV 362



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>ENGD_HAEIN (P44681) GTP-dependent nucleic acid-binding protein engD|
          Length = 362

 Score = 36.2 bits (82), Expect = 0.022
 Identities = 16/21 (76%), Positives = 18/21 (85%)
 Frame = -3

Query: 243 RLEGKEYIVQEGDVXXCRFNV 181
           RLEGK+YIVQ+GDV   RFNV
Sbjct: 342 RLEGKDYIVQDGDVMHFRFNV 362



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>ENGD_HAEDU (Q7VMI2) GTP-dependent nucleic acid-binding protein engD|
          Length = 362

 Score = 36.2 bits (82), Expect = 0.022
 Identities = 16/21 (76%), Positives = 18/21 (85%)
 Frame = -3

Query: 243 RLEGKEYIVQEGDVXXCRFNV 181
           RLEGK+YIVQ+GDV   RFNV
Sbjct: 342 RLEGKDYIVQDGDVMHFRFNV 362



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>ENGD_SHIFL (P0ABU4) GTP-dependent nucleic acid-binding protein engD|
          Length = 362

 Score = 32.3 bits (72), Expect = 0.31
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = -3

Query: 249 QMRLEGKEYIVQEGDVXXCRFNV 181
           +MR EGK+YIV++GDV    FNV
Sbjct: 340 KMRAEGKDYIVKDGDVMNFLFNV 362



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>ENGD_ECOLI (P0ABU2) GTP-dependent nucleic acid-binding protein engD|
          Length = 362

 Score = 32.3 bits (72), Expect = 0.31
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = -3

Query: 249 QMRLEGKEYIVQEGDVXXCRFNV 181
           +MR EGK+YIV++GDV    FNV
Sbjct: 340 KMRAEGKDYIVKDGDVMNFLFNV 362



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>ENGD_ECO57 (P0ABU3) GTP-dependent nucleic acid-binding protein engD|
          Length = 362

 Score = 32.3 bits (72), Expect = 0.31
 Identities = 14/23 (60%), Positives = 18/23 (78%)
 Frame = -3

Query: 249 QMRLEGKEYIVQEGDVXXCRFNV 181
           +MR EGK+YIV++GDV    FNV
Sbjct: 340 KMRAEGKDYIVKDGDVMNFLFNV 362



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>Y024_MYCGE (P47270) Probable GTP-binding protein MG024|
          Length = 367

 Score = 31.6 bits (70), Expect = 0.54
 Identities = 12/22 (54%), Positives = 18/22 (81%)
 Frame = -3

Query: 246 MRLEGKEYIVQEGDVXXCRFNV 181
           +RLEGK Y++++GDV   +FNV
Sbjct: 345 IRLEGKNYLIKDGDVCNFKFNV 366



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>PLK1_CAEEL (P34331) Serine/threonine-protein kinase plk-1 (EC 2.7.11.21)|
           (Polo-like kinase 1)
          Length = 649

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -2

Query: 268 PALPVTADEVGREGIYCAGRRCXXLPIQCVTTVP 167
           P    TA +V R+G + +G     LP+ C+T VP
Sbjct: 275 PTRRPTAKQVQRDGFFKSGFMPTRLPVSCLTMVP 308



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>ENGD_BUCAI (P57288) GTP-dependent nucleic acid-binding protein engD|
          Length = 361

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 249 QMRLEGKEYIVQEGDVXXCRFNV 181
           + R EGK+Y +Q+GD+    FNV
Sbjct: 339 KFRTEGKQYYIQDGDIIHFLFNV 361



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>YCHF_CAEEL (P91917) Putative GTP-binding protein W08E3.3|
          Length = 395

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 243 RLEGKEYIVQEGDVXXCRFN 184
           R +GK YIVQ+GDV   +FN
Sbjct: 366 RQQGKTYIVQDGDVIFFKFN 385



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>ENGD_BUCBP (Q89AR6) GTP-dependent nucleic acid-binding protein engD|
          Length = 362

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -3

Query: 249 QMRLEGKEYIVQEGDVXXCRFNV 181
           ++R+EGK Y++ +GD+    +NV
Sbjct: 340 KIRIEGKRYVICDGDIIHVLYNV 362


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,376,682
Number of Sequences: 219361
Number of extensions: 498433
Number of successful extensions: 1100
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 80,573,946
effective HSP length: 75
effective length of database: 64,121,871
effective search space used: 1538924904
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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