| Clone Name | rbags12h13 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 67.9 bits (34), Expect = 2e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 201 tgacatctccttcctgcacaatatattccttcccttccaacctcatctgcagtcacag 258 ||||||| ||||||||||| || || ||||||||||||||||||| ||||||| |||| Sbjct: 32081223 tgacatcgccttcctgcacgatgtaatccttcccttccaacctcaactgcagtgacag 32081280
>gb|AC084320.10| Oryza sativa chromosome 3 BAC OSJNBa0091J19 genomic sequence, complete sequence Length = 178158 Score = 67.9 bits (34), Expect = 2e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 201 tgacatctccttcctgcacaatatattccttcccttccaacctcatctgcagtcacag 258 ||||||| ||||||||||| || || ||||||||||||||||||| ||||||| |||| Sbjct: 82348 tgacatcgccttcctgcacgatgtaatccttcccttccaacctcaactgcagtgacag 82405
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 67.9 bits (34), Expect = 2e-08 Identities = 52/58 (89%) Strand = Plus / Plus Query: 201 tgacatctccttcctgcacaatatattccttcccttccaacctcatctgcagtcacag 258 ||||||| ||||||||||| || || ||||||||||||||||||| ||||||| |||| Sbjct: 32171735 tgacatcgccttcctgcacgatgtaatccttcccttccaacctcaactgcagtgacag 32171792
>ref|NM_184998.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1580 Score = 58.0 bits (29), Expect = 2e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 201 tgacatctccttcctgcacaatatattccttcccttccaacctca 245 ||||||| ||||||||||| || || ||||||||||||||||||| Sbjct: 1273 tgacatcgccttcctgcacgatgtaatccttcccttccaacctca 1229
>dbj|AK065910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045L16, full insert sequence Length = 2215 Score = 58.0 bits (29), Expect = 2e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 201 tgacatctccttcctgcacaatatattccttcccttccaacctca 245 ||||||| ||||||||||| || || ||||||||||||||||||| Sbjct: 1904 tgacatcgccttcctgcacgatgtaatccttcccttccaacctca 1860
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 46.1 bits (23), Expect = 0.064 Identities = 32/35 (91%) Strand = Plus / Plus Query: 203 acatctccttcctgcacaatatattccttcccttc 237 ||||| |||||||||||||||||||| || ||||| Sbjct: 5785134 acatcaccttcctgcacaatatattctttaccttc 5785168
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 46.1 bits (23), Expect = 0.064 Identities = 32/35 (91%) Strand = Plus / Plus Query: 203 acatctccttcctgcacaatatattccttcccttc 237 ||||| |||||||||||||||||||| || ||||| Sbjct: 841487 acatcgccttcctgcacaatatattctttaccttc 841521
>gb|BC043232.1| Homo sapiens zinc finger and SCAN domain containing 5, mRNA (cDNA clone MGC:44323 IMAGE:5295665), complete cds Length = 2472 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 tcctgcacaatatattcctt 231 |||||||||||||||||||| Sbjct: 1126 tcctgcacaatatattcctt 1107
>ref|NM_024303.1| Homo sapiens zinc finger and SCAN domain containing 5 (ZSCAN5), mRNA Length = 1938 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 tcctgcacaatatattcctt 231 |||||||||||||||||||| Sbjct: 591 tcctgcacaatatattcctt 572
>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome Length = 2628784 Score = 40.1 bits (20), Expect = 3.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 212 tcctgcacaatatattccttcccttcca 239 |||||||||||||| ||||| ||||||| Sbjct: 2583146 tcctgcacaatataatccttgccttcca 2583173
>gb|AC009185.6|AC009185 Homo sapiens chromosome 5 clone CTC-248O19, complete sequence Length = 87973 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 aaaatgattgtattttcctt 34 |||||||||||||||||||| Sbjct: 37230 aaaatgattgtattttcctt 37249
>dbj|AK223485.1| Homo sapiens mRNA for zinc finger and SCAN domain containing 5 variant, clone: FCC119F06 Length = 1867 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 tcctgcacaatatattcctt 231 |||||||||||||||||||| Sbjct: 552 tcctgcacaatatattcctt 533
>gb|AC092646.2| Homo sapiens BAC clone RP11-415D20 from 2, complete sequence Length = 176982 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 aattttgccttgccttgtaa 122 |||||||||||||||||||| Sbjct: 2408 aattttgccttgccttgtaa 2389
>gb|AC008389.4|AC008389 Homo sapiens chromosome 5 clone CTC-232D5, complete sequence Length = 80074 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 aaaatgattgtattttcctt 34 |||||||||||||||||||| Sbjct: 75893 aaaatgattgtattttcctt 75912
>gb|AC090572.7| Homo sapiens chromosome 8, clone RP11-386D6, complete sequence Length = 187022 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 attttgccttgccttgtaag 123 |||||||||||||||||||| Sbjct: 104178 attttgccttgccttgtaag 104159
>gb|AC011506.3|AC011506 Homo sapiens chromosome 19 clone CTD-2086L14, complete sequence Length = 100110 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 tcctgcacaatatattcctt 231 |||||||||||||||||||| Sbjct: 41397 tcctgcacaatatattcctt 41416
>dbj|AK098700.1| Homo sapiens cDNA FLJ25834 fis, clone TST08262 Length = 1813 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 tcctgcacaatatattcctt 231 |||||||||||||||||||| Sbjct: 487 tcctgcacaatatattcctt 468
>gb|BC002636.1| Homo sapiens zinc finger and SCAN domain containing 5, mRNA (cDNA clone MGC:4161 IMAGE:3606994), complete cds Length = 1938 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 tcctgcacaatatattcctt 231 |||||||||||||||||||| Sbjct: 591 tcctgcacaatatattcctt 572
>dbj|AP000642.5| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-55L24, complete sequences Length = 164036 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 250 cagtcacagggagggcaggaaata 273 ||||||| |||||||||||||||| Sbjct: 96574 cagtcactgggagggcaggaaata 96551 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,331,588 Number of Sequences: 3902068 Number of extensions: 2331588 Number of successful extensions: 42343 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42283 Number of HSP's gapped (non-prelim): 60 length of query: 299 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 277 effective length of database: 17,147,199,772 effective search space: 4749774336844 effective search space used: 4749774336844 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)