ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags12h13
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 68 2e-08
2gb|AC084320.10| Oryza sativa chromosome 3 BAC OSJNBa0091J19 geno... 68 2e-08
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
4ref|NM_184998.1| Oryza sativa (japonica cultivar-group), mRNA 58 2e-05
5dbj|AK065910.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
6gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 46 0.064
7dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome 46 0.064
8gb|BC043232.1| Homo sapiens zinc finger and SCAN domain containi... 40 3.9
9ref|NM_024303.1| Homo sapiens zinc finger and SCAN domain contai... 40 3.9
10gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome 40 3.9
11gb|AC009185.6|AC009185 Homo sapiens chromosome 5 clone CTC-248O1... 40 3.9
12dbj|AK223485.1| Homo sapiens mRNA for zinc finger and SCAN domai... 40 3.9
13gb|AC092646.2| Homo sapiens BAC clone RP11-415D20 from 2, comple... 40 3.9
14gb|AC008389.4|AC008389 Homo sapiens chromosome 5 clone CTC-232D5... 40 3.9
15gb|AC090572.7| Homo sapiens chromosome 8, clone RP11-386D6, comp... 40 3.9
16gb|AC011506.3|AC011506 Homo sapiens chromosome 19 clone CTD-2086... 40 3.9
17dbj|AK098700.1| Homo sapiens cDNA FLJ25834 fis, clone TST08262 40 3.9
18gb|BC002636.1| Homo sapiens zinc finger and SCAN domain containi... 40 3.9
19dbj|AP000642.5| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 3.9

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                          
Query: 201      tgacatctccttcctgcacaatatattccttcccttccaacctcatctgcagtcacag 258
                ||||||| ||||||||||| || || ||||||||||||||||||| ||||||| ||||
Sbjct: 32081223 tgacatcgccttcctgcacgatgtaatccttcccttccaacctcaactgcagtgacag 32081280



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>gb|AC084320.10| Oryza sativa chromosome 3 BAC OSJNBa0091J19 genomic sequence, complete
             sequence
          Length = 178158

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                       
Query: 201   tgacatctccttcctgcacaatatattccttcccttccaacctcatctgcagtcacag 258
             ||||||| ||||||||||| || || ||||||||||||||||||| ||||||| ||||
Sbjct: 82348 tgacatcgccttcctgcacgatgtaatccttcccttccaacctcaactgcagtgacag 82405



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                          
Query: 201      tgacatctccttcctgcacaatatattccttcccttccaacctcatctgcagtcacag 258
                ||||||| ||||||||||| || || ||||||||||||||||||| ||||||| ||||
Sbjct: 32171735 tgacatcgccttcctgcacgatgtaatccttcccttccaacctcaactgcagtgacag 32171792



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>ref|NM_184998.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1580

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                         
Query: 201  tgacatctccttcctgcacaatatattccttcccttccaacctca 245
            ||||||| ||||||||||| || || |||||||||||||||||||
Sbjct: 1273 tgacatcgccttcctgcacgatgtaatccttcccttccaacctca 1229



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>dbj|AK065910.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045L16, full
            insert sequence
          Length = 2215

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                         
Query: 201  tgacatctccttcctgcacaatatattccttcccttccaacctca 245
            ||||||| ||||||||||| || || |||||||||||||||||||
Sbjct: 1904 tgacatcgccttcctgcacgatgtaatccttcccttccaacctca 1860



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>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                  
Query: 203     acatctccttcctgcacaatatattccttcccttc 237
               ||||| |||||||||||||||||||| || |||||
Sbjct: 5785134 acatcaccttcctgcacaatatattctttaccttc 5785168



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>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 46.1 bits (23), Expect = 0.064
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                 
Query: 203    acatctccttcctgcacaatatattccttcccttc 237
              ||||| |||||||||||||||||||| || |||||
Sbjct: 841487 acatcgccttcctgcacaatatattctttaccttc 841521



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>gb|BC043232.1| Homo sapiens zinc finger and SCAN domain containing 5, mRNA (cDNA
            clone MGC:44323 IMAGE:5295665), complete cds
          Length = 2472

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 212  tcctgcacaatatattcctt 231
            ||||||||||||||||||||
Sbjct: 1126 tcctgcacaatatattcctt 1107



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>ref|NM_024303.1| Homo sapiens zinc finger and SCAN domain containing 5 (ZSCAN5),
           mRNA
          Length = 1938

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 212 tcctgcacaatatattcctt 231
           ||||||||||||||||||||
Sbjct: 591 tcctgcacaatatattcctt 572



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>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome
          Length = 2628784

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 212     tcctgcacaatatattccttcccttcca 239
               |||||||||||||| ||||| |||||||
Sbjct: 2583146 tcctgcacaatataatccttgccttcca 2583173



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>gb|AC009185.6|AC009185 Homo sapiens chromosome 5 clone CTC-248O19, complete sequence
          Length = 87973

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    aaaatgattgtattttcctt 34
             ||||||||||||||||||||
Sbjct: 37230 aaaatgattgtattttcctt 37249



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>dbj|AK223485.1| Homo sapiens mRNA for zinc finger and SCAN domain containing 5
           variant, clone: FCC119F06
          Length = 1867

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 212 tcctgcacaatatattcctt 231
           ||||||||||||||||||||
Sbjct: 552 tcctgcacaatatattcctt 533



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>gb|AC092646.2| Homo sapiens BAC clone RP11-415D20 from 2, complete sequence
          Length = 176982

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 103  aattttgccttgccttgtaa 122
            ||||||||||||||||||||
Sbjct: 2408 aattttgccttgccttgtaa 2389



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>gb|AC008389.4|AC008389 Homo sapiens chromosome 5 clone CTC-232D5, complete sequence
          Length = 80074

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    aaaatgattgtattttcctt 34
             ||||||||||||||||||||
Sbjct: 75893 aaaatgattgtattttcctt 75912



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>gb|AC090572.7| Homo sapiens chromosome 8, clone RP11-386D6, complete sequence
          Length = 187022

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 104    attttgccttgccttgtaag 123
              ||||||||||||||||||||
Sbjct: 104178 attttgccttgccttgtaag 104159



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>gb|AC011506.3|AC011506 Homo sapiens chromosome 19 clone CTD-2086L14, complete sequence
          Length = 100110

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   tcctgcacaatatattcctt 231
             ||||||||||||||||||||
Sbjct: 41397 tcctgcacaatatattcctt 41416



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>dbj|AK098700.1| Homo sapiens cDNA FLJ25834 fis, clone TST08262
          Length = 1813

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 212 tcctgcacaatatattcctt 231
           ||||||||||||||||||||
Sbjct: 487 tcctgcacaatatattcctt 468



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>gb|BC002636.1| Homo sapiens zinc finger and SCAN domain containing 5, mRNA (cDNA
           clone MGC:4161 IMAGE:3606994), complete cds
          Length = 1938

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 212 tcctgcacaatatattcctt 231
           ||||||||||||||||||||
Sbjct: 591 tcctgcacaatatattcctt 572



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>dbj|AP000642.5| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-55L24, complete
             sequences
          Length = 164036

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 250   cagtcacagggagggcaggaaata 273
             ||||||| ||||||||||||||||
Sbjct: 96574 cagtcactgggagggcaggaaata 96551


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,331,588
Number of Sequences: 3902068
Number of extensions: 2331588
Number of successful extensions: 42343
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42283
Number of HSP's gapped (non-prelim): 60
length of query: 299
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 277
effective length of database: 17,147,199,772
effective search space: 4749774336844
effective search space used: 4749774336844
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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