ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags12h11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_478402.1| Oryza sativa (japonica cultivar-group), mRNA 274 3e-70
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 100 1e-17
3dbj|AP004269.4| Oryza sativa (japonica cultivar-group) genomic D... 100 1e-17
4gb|AC154090.19| Medicago truncatula clone mth2-92k14, complete s... 48 0.032
5gb|AC097448.2| Homo sapiens BAC clone CTD-2021K4 from 2, complet... 46 0.13
6emb|AL031007.1|HS757P12 Human DNA sequence from clone RP4-757P12... 44 0.50
7gb|AC103864.2| Homo sapiens chromosome 8, clone RP11-192P9, comp... 44 0.50
8gb|AC090096.5| Homo sapiens chromosome 8, clone RP11-159C14, com... 44 0.50
9gb|AC011884.8| Homo sapiens chromosome , clone RP11-17N6, comple... 44 0.50
10gb|AC019246.6|AC019246 Homo sapiens, clone RP11-2K18, complete s... 44 0.50
11gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence 42 2.0
12gb|AC113585.4| Trypanosoma brucei chromosome 5 clone RPCI93-27M3... 42 2.0
13gb|AC093341.5| Mus musculus chromosome 5, clone RP23-7E4, comple... 42 2.0
14ref|XM_820610.1| Trypanosoma brucei TREU927 clone RPCI93-27M3 hy... 42 2.0
15emb|AL354701.7| Human DNA sequence from clone RP11-785H23 on chr... 42 2.0
16gb|AC009117.8| Homo sapiens chromosome 16 clone RP11-481E4, comp... 42 2.0
17gb|AC013473.8| Homo sapiens BAC clone RP11-504G5 from 2, complet... 42 2.0
18gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome 42 2.0
19emb|AL837526.1| Mouse DNA sequence from clone RP23-447O22 on chr... 42 2.0
20gb|AC152926.1| Tribolium castaneum BAC T.cast_C1K1 (Clemson Uni... 40 7.8
21gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 7.8
22gb|AC131586.10| Mus musculus chromosome 14, clone RP24-226L18, c... 40 7.8
23gb|AC145923.3| Pan troglodytes BAC clone RP43-10M24 from 7, comp... 40 7.8
24gb|DQ157415.1| Pteropus hypomelanus clone AAT18 microsatellite s... 40 7.8
25emb|AL512844.5| Human DNA sequence from clone RP11-90H3 on chrom... 40 7.8
26emb|AL357052.15| Human DNA sequence from clone RP11-686D16 on ch... 40 7.8
27emb|AL137855.10| Human DNA sequence from clone RP5-1064J9 on chr... 40 7.8
28gb|AC090146.5| Homo sapiens chromosome 8, clone RP11-366J9, comp... 40 7.8
29gb|DQ100345.1| Rattus norvegicus glucose-6-phosphatase catalytic... 40 7.8
30gb|AC009941.5|AC009941 Homo sapiens, clone RP11-115D10, complete... 40 7.8
31gb|AC148684.1| Macaca mulatta Major Histocompatibility Complex B... 40 7.8
32gb|AC148680.1| Macaca mulatta Major Histocompatibility Complex B... 40 7.8
33emb|BX005462.10| Zebrafish DNA sequence from clone CH211-158D24 ... 40 7.8
34gb|AC019170.7| Homo sapiens BAC clone RP11-162G9 from 4, complet... 40 7.8
35gb|AC151737.3| Pan troglodytes BAC clone RP43-70B8 from chromoso... 40 7.8
36gb|AC013354.6|AC013354 Genomic sequence for Arabidopsis thaliana... 40 7.8
37dbj|AB028606.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 7.8
38emb|AJ300144.1|HVU300144 Hordeum vulgare srg6 gene for stress re... 40 7.8
39gb|AC006145.2|AC006145 Homo sapiens PAC clone RP4-560O14 from 7q... 40 7.8
40emb|CR942675.2| Xenopus tropicalis finished cDNA, clone TNeu022o10 40 7.8
41dbj|AP000808.6| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 7.8
42dbj|AP003732.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 7.8
43emb|BX511198.8| Mouse DNA sequence from clone RP23-390P10 on chr... 40 7.8
44gb|AE016830.1| Enterococcus faecalis V583, complete genome 40 7.8
45emb|AL672162.6| Mouse DNA sequence from clone RP23-100C4 on chro... 40 7.8
46emb|BX004876.7| Zebrafish DNA sequence from clone DKEY-11M19, co... 40 7.8
47gb|AC140195.3| Mus musculus BAC clone RP24-64A19 from 6, complet... 40 7.8
48emb|AL928673.4| Mouse DNA sequence from clone RP23-139B13 on chr... 40 7.8
49emb|AL845495.9| Mouse DNA sequence from clone RP23-234E8 on chro... 40 7.8
50emb|AL691418.9| Mouse DNA sequence from clone RP23-193L14 on chr... 40 7.8
51gb|AC159189.2| Mus musculus BAC clone RP24-159L17 from chromosom... 40 7.8
52dbj|AP003116.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 7.8 
>ref|XM_478402.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3132

 Score =  274 bits (138), Expect = 3e-70
 Identities = 300/354 (84%)
 Strand = Plus / Minus

                                                                        
Query: 224  gcatctgacatcagctacgagatgtcgaatgtgtggcccataccatttgactcgttcgac 283
            |||| |||||||| | ||||||||||| || || || || ||||||||||| ||||||||
Sbjct: 3120 gcatttgacatcaaccacgagatgtcgtatatgcggaccgtaccatttgacgcgttcgac 3061

                                                                        
Query: 284  atgctccagagagactttccaagacagtccatgagctgtcgcaatgctactgatcgattc 343
            ||||||||  | ||| ||||||||||||||||| | | | |||||| || |||| || | 
Sbjct: 3060 atgctccaccgtgacgttccaagacagtccatgtgttttggcaatgttagtgatggactt 3001

                                                                        
Query: 344  aacaacattgtccaaccagcgtgcctcatctgagttgttgacgttcccatgtatatgtaa 403
            ||||||||||||||||||| | | |||||| |||| |||||| ||||||||||| || | 
Sbjct: 3000 aacaacattgtccaaccagagcgactcatccgagtcgttgacattcccatgtatgtgcag 2941

                                                                        
Query: 404  tacgcctccgtcaacccttaaagccctaacagcagtagcccagctacattcactggaggg 463
             | ||| || ||| ||||||||||||| ||||||||  |||||||||||||||| |||||
Sbjct: 2940 catgccaccttcagcccttaaagccctcacagcagtgtcccagctacattcactcgaggg 2881

                                                                        
Query: 464  tagcagcccaagacaaacacgatcagcgacccctttcggtgctatcagacggttatctcc 523
             | || ||||||||||||||| ||||| | |||||| |||||| ||| ||||||||||||
Sbjct: 2880 caacaacccaagacaaacacggtcagcaatccctttaggtgctgtcaaacggttatctcc 2821

                                                                  
Query: 524  ttcaagtataacacatcgatctgctacatggttgtccattacattccgctgaag 577
            ||||||||||| |||||||||||| |||||||||||||| ||||| || |||||
Sbjct: 2820 ttcaagtataatacatcgatctgccacatggttgtccatgacattacgttgaag 2767
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 74/82 (90%)
 Strand = Plus / Minus

                                                                            
Query: 496      ctttcggtgctatcagacggttatctccttcaagtataacacatcgatctgctacatggt 555
                |||| |||||| ||| ||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 19713711 ctttaggtgctgtcaaacggttatctccttcaagtataatacatcgatctgccacatggt 19713652

                                      
Query: 556      tgtccattacattccgctgaag 577
                ||||||| ||||| || |||||
Sbjct: 19713651 tgtccatgacattacgttgaag 19713630



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 95/113 (84%)
 Strand = Plus / Minus

                                                                            
Query: 201      ctttcgctttgtcagtttgatccgcatctgacatcagctacgagatgtcgaatgtgtggc 260
                |||||||||||| || |||  | |||| |||||||| | ||||||||||| || || || 
Sbjct: 19715007 ctttcgctttgttaggttgcccggcatttgacatcaaccacgagatgtcgtatatgcgga 19714948

                                                                     
Query: 261      ccataccatttgactcgttcgacatgctccagagagactttccaagacagtcc 313
                || ||||||||||| ||||||||||||||||  | ||| ||||||||||||||
Sbjct: 19714947 ccgtaccatttgacgcgttcgacatgctccaccgtgacgttccaagacagtcc 19714895



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 64/72 (88%)
 Strand = Plus / Minus

                                                                            
Query: 419      ccttaaagccctaacagcagtagcccagctacattcactggagggtagcagcccaagaca 478
                |||||||||||| ||||||||  |||||||||||||||| ||||| | || |||||||||
Sbjct: 19713870 ccttaaagccctcacagcagtgtcccagctacattcactcgagggcaacaacccaagaca 19713811

                            
Query: 479      aacacgatcagc 490
                |||||| |||||
Sbjct: 19713810 aacacggtcagc 19713799



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                      
Query: 344      aacaacattgtccaaccagcgtgcctcatctgagttgttgacgttcccatgtat 397
                ||||||||||||||||||| | | |||||| |||| |||||| |||||||||||
Sbjct: 19714767 aacaacattgtccaaccagagcgactcatccgagtcgttgacattcccatgtat 19714714
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>dbj|AP004269.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0048D08
          Length = 145772

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 74/82 (90%)
 Strand = Plus / Minus

                                                                         
Query: 496   ctttcggtgctatcagacggttatctccttcaagtataacacatcgatctgctacatggt 555
             |||| |||||| ||| ||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 45717 ctttaggtgctgtcaaacggttatctccttcaagtataatacatcgatctgccacatggt 45658

                                   
Query: 556   tgtccattacattccgctgaag 577
             ||||||| ||||| || |||||
Sbjct: 45657 tgtccatgacattacgttgaag 45636



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 95/113 (84%)
 Strand = Plus / Minus

                                                                         
Query: 201   ctttcgctttgtcagtttgatccgcatctgacatcagctacgagatgtcgaatgtgtggc 260
             |||||||||||| || |||  | |||| |||||||| | ||||||||||| || || || 
Sbjct: 47013 ctttcgctttgttaggttgcccggcatttgacatcaaccacgagatgtcgtatatgcgga 46954

                                                                  
Query: 261   ccataccatttgactcgttcgacatgctccagagagactttccaagacagtcc 313
             || ||||||||||| ||||||||||||||||  | ||| ||||||||||||||
Sbjct: 46953 ccgtaccatttgacgcgttcgacatgctccaccgtgacgttccaagacagtcc 46901



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 64/72 (88%)
 Strand = Plus / Minus

                                                                         
Query: 419   ccttaaagccctaacagcagtagcccagctacattcactggagggtagcagcccaagaca 478
             |||||||||||| ||||||||  |||||||||||||||| ||||| | || |||||||||
Sbjct: 45876 ccttaaagccctcacagcagtgtcccagctacattcactcgagggcaacaacccaagaca 45817

                         
Query: 479   aacacgatcagc 490
             |||||| |||||
Sbjct: 45816 aacacggtcagc 45805



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                   
Query: 344   aacaacattgtccaaccagcgtgcctcatctgagttgttgacgttcccatgtat 397
             ||||||||||||||||||| | | |||||| |||| |||||| |||||||||||
Sbjct: 46773 aacaacattgtccaaccagagcgactcatccgagtcgttgacattcccatgtat 46720
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>gb|AC154090.19| Medicago truncatula clone mth2-92k14, complete sequence
          Length = 117932

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                         
Query: 419   ccttaaagccctaacagcagtagcccagctacattcactggagggtagcagcccaagaca 478
             |||||||||||| ||||| ||  |||||||||||||||| || || || || ||||||||
Sbjct: 25951 ccttaaagccctcacagcggtgacccagctacattcactagatggaaggagaccaagaca 26010



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 249   cgaatgtgtggcccataccatttgactcgttcgacatgctc 289
             |||||||||||  |||||||||| |||| ||| ||||||||
Sbjct: 25377 cgaatgtgtggagcataccatttcactctttcaacatgctc 25417
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>gb|AC097448.2| Homo sapiens BAC clone CTD-2021K4 from 2, complete sequence
          Length = 83007

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 80   caacatacatggtttcattctct 102
            |||||||||||||||||||||||
Sbjct: 3441 caacatacatggtttcattctct 3463
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>emb|AL031007.1|HS757P12 Human DNA sequence from clone RP4-757P12 on chromosome Xp22.11-22.31
            Contains part of the SCML2 gene forsex comb on
            midleg-like 2 (Drosophila), complete sequence
          Length = 47167

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 42   aagtaccagnaacatgcttccttcttttc 70
            ||||||||| ||||||||||||| |||||
Sbjct: 2326 aagtaccaggaacatgcttccttgttttc 2298
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>gb|AC103864.2| Homo sapiens chromosome 8, clone RP11-192P9, complete sequence
          Length = 164867

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 419   ccttaaagccctaacagcagta 440
             ||||||||||||||||||||||
Sbjct: 27752 ccttaaagccctaacagcagta 27731
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>gb|AC090096.5| Homo sapiens chromosome 8, clone RP11-159C14, complete sequence
          Length = 173158

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 60    tccttcttttcttctttgtaca 81
             ||||||||||||||||||||||
Sbjct: 61957 tccttcttttcttctttgtaca 61936
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>gb|AC011884.8| Homo sapiens chromosome , clone RP11-17N6, complete sequence
          Length = 163009

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 60     tccttcttttcttctttgtaca 81
              ||||||||||||||||||||||
Sbjct: 139358 tccttcttttcttctttgtaca 139337
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>gb|AC019246.6|AC019246 Homo sapiens, clone RP11-2K18, complete sequence
          Length = 154984

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 419   ccttaaagccctaacagcagta 440
             ||||||||||||||||||||||
Sbjct: 39963 ccttaaagccctaacagcagta 39942
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>gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence
          Length = 1608198

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 362     gcgtgcctcatctgagttgtt 382
               |||||||||||||||||||||
Sbjct: 1004517 gcgtgcctcatctgagttgtt 1004537
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>gb|AC113585.4| Trypanosoma brucei chromosome 5 clone RPCI93-27M3, complete sequence
          Length = 127380

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 362   gcgtgcctcatctgagttgtt 382
             |||||||||||||||||||||
Sbjct: 46518 gcgtgcctcatctgagttgtt 46538
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>gb|AC093341.5| Mus musculus chromosome 5, clone RP23-7E4, complete sequence
          Length = 220668

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 179   taaaacagaccattttcagct 199
             |||||||||||||||||||||
Sbjct: 37319 taaaacagaccattttcagct 37299
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>ref|XM_820610.1| Trypanosoma brucei TREU927 clone RPCI93-27M3 hypothetical protein
            (Tb927.5.3230) partial mRNA
          Length = 6546

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 362  gcgtgcctcatctgagttgtt 382
            |||||||||||||||||||||
Sbjct: 3230 gcgtgcctcatctgagttgtt 3210
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>emb|AL354701.7| Human DNA sequence from clone RP11-785H23 on chromosome 9 Contains the
             3' end of a novel gene, and a novel pseudogene, complete
             sequence
          Length = 131366

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 58    cttccttcttttcttctttgt 78
             |||||||||||||||||||||
Sbjct: 80404 cttccttcttttcttctttgt 80424
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>gb|AC009117.8| Homo sapiens chromosome 16 clone RP11-481E4, complete sequence
          Length = 172868

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 52     aacatgcttccttcttttcttcttt 76
              ||||| |||||||||||||||||||
Sbjct: 144346 aacattcttccttcttttcttcttt 144370
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>gb|AC013473.8| Homo sapiens BAC clone RP11-504G5 from 2, complete sequence
          Length = 170781

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 52    aacatgcttccttcttttcttcttt 76
             ||||| |||||||||||||||||||
Sbjct: 62601 aacatccttccttcttttcttcttt 62577
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>gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome
          Length = 1992676

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 187     accattttcagctgctttcgc 207
               |||||||||||||||||||||
Sbjct: 1211890 accattttcagctgctttcgc 1211910
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>emb|AL837526.1| Mouse DNA sequence from clone RP23-447O22 on chromosome 4, complete
             sequence
          Length = 23987

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 56    tgcttccttcttttcttcttt 76
             |||||||||||||||||||||
Sbjct: 20509 tgcttccttcttttcttcttt 20489
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>gb|AC152926.1| Tribolium castaneum  BAC T.cast_C1K1 (Clemson University Genomics
             Institute Tribolium castaneum BAC Library (Red Flour
             Beetle)) complete sequence
          Length = 130658

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   cccaagtataaaacagacca 190
             ||||||||||||||||||||
Sbjct: 84617 cccaagtataaaacagacca 84598
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>gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 5, complete
             sequence
          Length = 1507550

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    ttcttttcttctttgtacaa 82
             ||||||||||||||||||||
Sbjct: 87983 ttcttttcttctttgtacaa 88002
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>gb|AC131586.10| Mus musculus chromosome 14, clone RP24-226L18, complete sequence
          Length = 171023

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 59     ttccttcttttcttctttgt 78
              ||||||||||||||||||||
Sbjct: 100277 ttccttcttttcttctttgt 100258
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>gb|AC145923.3| Pan troglodytes BAC clone RP43-10M24 from 7, complete sequence
          Length = 181799

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   ataaaacagaccattttcag 197
             ||||||||||||||||||||
Sbjct: 56040 ataaaacagaccattttcag 56059
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>gb|DQ157415.1| Pteropus hypomelanus clone AAT18 microsatellite sequence
          Length = 208

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 58  cttccttcttttcttctttg 77
           ||||||||||||||||||||
Sbjct: 189 cttccttcttttcttctttg 208
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>emb|AL512844.5| Human DNA sequence from clone RP11-90H3 on chromosome 1 Contains two
             matrin 3 (MATR3) pseudogenes, complete sequence
          Length = 159017

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    ttccttcttttcttctttgt 78
             ||||||||||||||||||||
Sbjct: 98302 ttccttcttttcttctttgt 98321
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>emb|AL357052.15| Human DNA sequence from clone RP11-686D16 on chromosome 6 Contains a
             novel gene and a ribosomal protein L5 (RPL5) (MSTP030)
             pseudogene, complete sequence
          Length = 106288

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    cttccttcttttcttctttg 77
             ||||||||||||||||||||
Sbjct: 45636 cttccttcttttcttctttg 45655
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>emb|AL137855.10| Human DNA sequence from clone RP5-1064J9 on chromosome 1p32.2-33,
             complete sequence
          Length = 106970

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    cttccttcttttcttctttg 77
             ||||||||||||||||||||
Sbjct: 97276 cttccttcttttcttctttg 97295
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>gb|AC090146.5| Homo sapiens chromosome 8, clone RP11-366J9, complete sequence
          Length = 158233

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 59    ttccttcttttcttctttgt 78
             ||||||||||||||||||||
Sbjct: 17255 ttccttcttttcttctttgt 17236
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>gb|DQ100345.1| Rattus norvegicus glucose-6-phosphatase catalytic subunit gene,
            promoter region
          Length = 2436

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 59   ttccttcttttcttctttgt 78
            ||||||||||||||||||||
Sbjct: 1149 ttccttcttttcttctttgt 1168
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>gb|AC009941.5|AC009941 Homo sapiens, clone RP11-115D10, complete sequence
          Length = 168829

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 55    atgcttccttcttttcttct 74
             ||||||||||||||||||||
Sbjct: 19944 atgcttccttcttttcttct 19963
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>gb|AC148684.1| Macaca mulatta Major Histocompatibility Complex BAC MMU179H14, complete
             sequence
          Length = 165072

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    cttccttcttttcttctttg 77
             ||||||||||||||||||||
Sbjct: 36765 cttccttcttttcttctttg 36746
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>gb|AC148680.1| Macaca mulatta Major Histocompatibility Complex BAC MMU139P19, complete
              sequence
          Length = 178730

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 58     cttccttcttttcttctttg 77
              ||||||||||||||||||||
Sbjct: 110275 cttccttcttttcttctttg 110256
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>emb|BX005462.10| Zebrafish DNA sequence from clone CH211-158D24 in linkage group 8,
              complete sequence
          Length = 175315

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 98     tctctgatgaataacaaaaatctt 121
              |||||||||||||| |||||||||
Sbjct: 101931 tctctgatgaataagaaaaatctt 101954
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>gb|AC019170.7| Homo sapiens BAC clone RP11-162G9 from 4, complete sequence
          Length = 185281

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 56    tgcttccttcttttcttctttgta 79
             |||||| |||||||||||||||||
Sbjct: 99180 tgcttcattcttttcttctttgta 99157
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>gb|AC151737.3| Pan troglodytes BAC clone RP43-70B8 from chromosome 7, complete
             sequence
          Length = 212458

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   ataaaacagaccattttcag 197
             ||||||||||||||||||||
Sbjct: 94803 ataaaacagaccattttcag 94784
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>gb|AC013354.6|AC013354 Genomic sequence for Arabidopsis thaliana BAC F15H18 from chromosome I,
             complete sequence
          Length = 95327

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 156   ctcaaattcaaaatccccaa 175
             ||||||||||||||||||||
Sbjct: 16836 ctcaaattcaaaatccccaa 16817
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>dbj|AB028606.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F16F17
          Length = 61510

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    gcttccttcttttcttcttt 76
             ||||||||||||||||||||
Sbjct: 25567 gcttccttcttttcttcttt 25548
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>emb|AJ300144.1|HVU300144 Hordeum vulgare srg6 gene for stress responsive gene protein 6, exons
            1-11, cultivar Morex
          Length = 4197

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 180  aaaacagaccattttcagctgctt 203
            ||||||||||| ||||||||||||
Sbjct: 2086 aaaacagaccagtttcagctgctt 2063
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>gb|AC006145.2|AC006145 Homo sapiens PAC clone RP4-560O14 from 7q21.1-q21.2, complete sequence
          Length = 144659

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 178    ataaaacagaccattttcag 197
              ||||||||||||||||||||
Sbjct: 110104 ataaaacagaccattttcag 110123
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>emb|CR942675.2| Xenopus tropicalis finished cDNA, clone TNeu022o10
          Length = 2646

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 346  caacattgtccaaccagcgtgcctcatc 373
            ||||||||  ||||||||||||||||||
Sbjct: 1420 caacattggacaaccagcgtgcctcatc 1393
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>dbj|AP000808.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-757G1, complete
             sequence
          Length = 175883

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    tgcttccttcttttcttctt 75
             ||||||||||||||||||||
Sbjct: 43398 tgcttccttcttttcttctt 43379
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>dbj|AP003732.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-682D22, complete
              sequence
          Length = 193132

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     tgcttccttcttttcttctt 75
              ||||||||||||||||||||
Sbjct: 137784 tgcttccttcttttcttctt 137765
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>emb|BX511198.8| Mouse DNA sequence from clone RP23-390P10 on chromosome 4, complete
              sequence
          Length = 183261

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 295    agactttccaagacagtcca 314
              ||||||||||||||||||||
Sbjct: 177661 agactttccaagacagtcca 177642
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>gb|AE016830.1| Enterococcus faecalis V583, complete genome
          Length = 3218031

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 63      ttcttttcttctttgtacaacata 86
               |||||||||||||||||| |||||
Sbjct: 1245129 ttcttttcttctttgtactacata 1245152
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>emb|AL672162.6| Mouse DNA sequence from clone RP23-100C4 on chromosome 2, complete
             sequence
          Length = 136483

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 59    ttccttcttttcttctttgt 78
             ||||||||||||||||||||
Sbjct: 71065 ttccttcttttcttctttgt 71046
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>emb|BX004876.7| Zebrafish DNA sequence from clone DKEY-11M19, complete sequence
          Length = 174893

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 244    gatgtcgaatgtgtggccca 263
              ||||||||||||||||||||
Sbjct: 115135 gatgtcgaatgtgtggccca 115154
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>gb|AC140195.3| Mus musculus BAC clone RP24-64A19 from 6, complete sequence
          Length = 156314

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 58    cttccttcttttcttctttg 77
             ||||||||||||||||||||
Sbjct: 10866 cttccttcttttcttctttg 10885
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>emb|AL928673.4| Mouse DNA sequence from clone RP23-139B13 on chromosome 4, complete
             sequence
          Length = 71090

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    tccttcttttcttctttgta 79
             ||||||||||||||||||||
Sbjct: 34024 tccttcttttcttctttgta 34043
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>emb|AL845495.9| Mouse DNA sequence from clone RP23-234E8 on chromosome 2, complete
              sequence
          Length = 201479

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 58     cttccttcttttcttctttg 77
              ||||||||||||||||||||
Sbjct: 108814 cttccttcttttcttctttg 108795
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>emb|AL691418.9| Mouse DNA sequence from clone RP23-193L14 on chromosome X, complete
              sequence
          Length = 214219

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 78     tacaacatacatggtttcattctc 101
              |||||||||| |||||||||||||
Sbjct: 110982 tacaacatacttggtttcattctc 111005
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>gb|AC159189.2| Mus musculus BAC clone RP24-159L17 from chromosome 6, complete sequence
          Length = 160884

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    cttccttcttttcttctttg 77
             ||||||||||||||||||||
Sbjct: 38404 cttccttcttttcttctttg 38385
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>dbj|AP003116.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1241F12
          Length = 142424

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   tataaaacagaccattttca 196
             ||||||||||||||||||||
Sbjct: 83458 tataaaacagaccattttca 83439


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,265,017
Number of Sequences: 3902068
Number of extensions: 5265017
Number of successful extensions: 118942
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 118720
Number of HSP's gapped (non-prelim): 221
length of query: 577
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 554
effective length of database: 17,143,297,704
effective search space: 9497386928016
effective search space used: 9497386928016
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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