ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags12h03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SPAG6_HUMAN (O75602) Sperm-associated antigen 6 (PF16 protein ho... 31 3.0
2BIOA_MYCLE (P45488) Adenosylmethionine-8-amino-7-oxononanoate am... 29 8.7

>SPAG6_HUMAN (O75602) Sperm-associated antigen 6 (PF16 protein homolog) (Sperm|
           flagellar protein) (Repro-SA-1)
          Length = 509

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = -1

Query: 514 LPQQPSYVKSAASTVVKRPLAQHTPELTAMV 422
           L  +  YVK  AST++ R +A+HTPEL+ +V
Sbjct: 260 LKDKDEYVKKNASTLI-REIAKHTPELSQLV 289



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>BIOA_MYCLE (P45488) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase|
           (EC 2.6.1.62) (7,8-diamino-pelargonic acid
           aminotransferase) (DAPA aminotransferase)
          Length = 436

 Score = 29.3 bits (64), Expect = 8.7
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -1

Query: 511 PQQPSYVKSAASTVVKRPLAQHTPELTAMV 422
           PQ P     A S   +  LAQHTPEL A+V
Sbjct: 191 PQVPRDYDPAYSKAFETQLAQHTPELAAVV 220


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,602,924
Number of Sequences: 219361
Number of extensions: 1162962
Number of successful extensions: 2959
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2957
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5044307840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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