ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags12g13 |
|---|---|
| Clone Library Name | barley_pub |
>NDUAC_ARATH (Q9M9M9) Probable NADH-ubiquinone oxidoreductase subunit B17.2 (EC| 1.6.5.3) (EC 1.6.99.3) (Complex I-B17.2) (CI-B17.2) Length = 159 Score = 207 bits (526), Expect = 2e-53 Identities = 91/122 (74%), Positives = 104/122 (85%) Frame = -3 Query: 548 NLLQTKIXNIGATLVGVDSFGNKYYEKLHDTQYGRHRWVEYAEKGRYNASQVPAEWHGWL 369 NLLQTKI NIGATLVGVD FGNKYY+KL DTQYGRHRWVEYA K RYNASQVPAEWHGWL Sbjct: 38 NLLQTKIHNIGATLVGVDKFGNKYYQKLGDTQYGRHRWVEYASKDRYNASQVPAEWHGWL 97 Query: 368 HHITDSTGDKLLEEKTKKFIMEHRQNYTGQGDDLIYHSKGHALNPGQRDWTRYQPWEPKK 189 H ITD TGD+LL K K++ +EH++N++G+GD IYHSKGH LNPGQ++WTRYQ W P K Sbjct: 98 HFITDHTGDELLSLKPKRYGLEHKENFSGEGDAYIYHSKGHTLNPGQKNWTRYQSWVPTK 157 Query: 188 EE 183 + Sbjct: 158 TQ 159
>NDUAC_CAEEL (Q9N2W7) Probable NADH dehydrogenase [ubiquinone] 1 alpha| subcomplex subunit 12 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase 17.0 kDa subunit) Length = 146 Score = 77.8 bits (190), Expect = 2e-14 Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 2/108 (1%) Frame = -3 Query: 512 TLVGVDSFGNKYYEKLHDTQYGRHRWVEYAEKG--RYNASQVPAEWHGWLHHITDSTGDK 339 TLVG D+FGN+YYE + R+RWVE+ +K Y+A+QVP EWH WLHHITD Sbjct: 42 TLVGSDNFGNRYYEN-NAYFVPRNRWVEFPDKVWLDYDATQVPPEWHSWLHHITDD-APS 99 Query: 338 LLEEKTKKFIMEHRQNYTGQGDDLIYHSKGHALNPGQRDWTRYQPWEP 195 + T+ +++EH++N + IY K + P T+ Q W+P Sbjct: 100 VKPPPTQDWVLEHKENTS------IYADKKYV--PYSTTRTKIQGWQP 139
>NDUAC_HUMAN (Q9UI09) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit| 12 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase subunit B17.2) (Complex I-B17.2) (CI-B17.2) (CIB17.2) (13 kDa differentiation-associated protein) Length = 145 Score = 62.4 bits (150), Expect = 8e-10 Identities = 35/93 (37%), Positives = 45/93 (48%), Gaps = 7/93 (7%) Frame = -3 Query: 512 TLVGVDSFGNKYYEKLHDTQYGRHRWVEYAEKGR-------YNASQVPAEWHGWLHHITD 354 TLVG D +GNKYYE + +GRHRWV Y + + S VP EWH WLH +TD Sbjct: 37 TLVGEDKYGNKYYED-NKQFFGRHRWVVYTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTD 95 Query: 353 STGDKLLEEKTKKFIMEHRQNYTGQGDDLIYHS 255 K H+ N TG + + +S Sbjct: 96 DPPTTKPLTARKFIWTNHKFNVTGTPEQYVPYS 128
>NDUAC_BOVIN (O97725) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit| 12 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase subunit B17.2) (Complex I-B17.2) (CI-B17.2) (CIB17.2) Length = 145 Score = 60.1 bits (144), Expect = 4e-09 Identities = 36/94 (38%), Positives = 48/94 (51%), Gaps = 8/94 (8%) Frame = -3 Query: 512 TLVGVDSFGNKYYEKLHDTQYGRHRWVEYAEKGR-------YNASQVPAEWHGWLHHITD 354 TLVG D +GNKYYE + +GRHRWV Y + + S VP EWH WLH +TD Sbjct: 37 TLVGEDKYGNKYYED-NKQFFGRHRWVIYTTEMNGKNTFWDVDGSMVPPEWHRWLHCMTD 95 Query: 353 STGDKLLEEKTKKFI-MEHRQNYTGQGDDLIYHS 255 + +KFI H+ N +G + +S Sbjct: 96 DP-PTVKPPTARKFIWTNHKFNLSGTPQQYVPYS 128
>NDUAC_MOUSE (Q7TMF3) NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit| 12 (EC 1.6.5.3) (EC 1.6.99.3) (NADH-ubiquinone oxidoreductase subunit B17.2) (Complex I-B17.2) (CI-B17.2) (CIB17.2) Length = 145 Score = 57.8 bits (138), Expect = 2e-08 Identities = 29/60 (48%), Positives = 35/60 (58%), Gaps = 7/60 (11%) Frame = -3 Query: 512 TLVGVDSFGNKYYEKLHDTQYGRHRWVEYAEKGR-------YNASQVPAEWHGWLHHITD 354 TLVG D +GNKYYE + +GRHRWV Y + + S VP EWH WLH +TD Sbjct: 37 TLVGEDKYGNKYYED-NKQFFGRHRWVIYTTEMNGKNTFWDVDGSMVPPEWHRWLHCMTD 95
>Y725_RICPR (Q9ZCK4) Hypothetical protein RP725| Length = 100 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%) Frame = -3 Query: 512 TLVGVDSFGNKYYEKLHDTQY-GR-HRWVEYAEKGRYNASQVPAEWHGWLHHITD 354 T VG D F N+YYE ++ Y GR R V Y K ++++P W+ WLHH+ + Sbjct: 14 TKVGEDEFLNQYYESRNNIDYLGRSRRCVIY--KNINESTKIPPSWYSWLHHLVN 66
>MIMIT_HUMAN (Q8N183) Mimitin, mitochondrial precursor (Myc-induced| mitochondrial protein) (MMTN) (B17.2-like) (B17.2L) Length = 169 Score = 37.7 bits (86), Expect = 0.022 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 10/83 (12%) Frame = -3 Query: 506 VGVDSFGNKY-----YEKLHDTQYGRHRWVEYAEKGR--YNASQVPAEWHGWLHHI--TD 354 VG D FGNKY Y+ R VE A K Y A +P EW W+ T Sbjct: 23 VGTDQFGNKYYYIPQYKNWRGQTIREKRIVEAANKKEVDYEAGDIPTEWEAWIRRTRKTP 82 Query: 353 STGDKLLE-EKTKKFIMEHRQNY 288 T +++L+ EK ++ I Q++ Sbjct: 83 PTMEEILKNEKHREEIKIKSQDF 105
>MIMIT_MOUSE (Q59J78) Mimitin, mitochondrial precursor (Myc-induced| mitochondrial protein) (MMTN) Length = 168 Score = 33.9 bits (76), Expect = 0.31 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 10/83 (12%) Frame = -3 Query: 506 VGVDSFGNKYY-----EKLHDTQYGRHRWVEYAEKGR--YNASQVPAEWHGWLHHI--TD 354 VG D GNKYY + R VE A + Y A +P EW W+ T Sbjct: 23 VGTDHLGNKYYYVAEYKNWRGQTIREKRIVEAANRKEVDYEAGDIPTEWEAWIRRTRKTP 82 Query: 353 STGDKLLE-EKTKKFIMEHRQNY 288 T +++L+ EK ++ I Q++ Sbjct: 83 PTMEEILKNEKYREEIKIKSQDF 105
>GLNA_TUBBO (Q86ZU6) Glutamine synthetase (EC 6.3.1.2) (Glutamate--ammonia| ligase) (GS) Length = 358 Score = 31.6 bits (70), Expect = 1.5 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 17/79 (21%) Frame = -3 Query: 455 QYGRHRWV----------EYAEKGRYNASQVPAEWHGWLHHITDST-------GDKLLEE 327 + G H W+ E+ K ++ +P +W+G H ST G K +EE Sbjct: 212 EMGDHLWISRYLLHRVAEEFGVKISFHPKPIPGDWNGSGLHTNVSTQAMRDEGGMKAIEE 271 Query: 326 KTKKFIMEHRQNYTGQGDD 270 +K H ++ GDD Sbjct: 272 AIQKLSTRHAEHIAVYGDD 290
>XYNB_CALSA (P23552) Beta-xylosidase (EC 3.2.1.37) (1,4-beta-D-xylan| xylohydrolase) (Xylan 1,4-beta-xylosidase) Length = 488 Score = 29.6 bits (65), Expect = 5.9 Identities = 33/133 (24%), Positives = 44/133 (33%), Gaps = 19/133 (14%) Frame = -3 Query: 524 NIGATLVGVDSFGNKYYEKLHDTQYGRHRWVEYAEKGRYNASQVPAEWHGWLH------- 366 N G L ++ F K H T R W + +K R +HGWL+ Sbjct: 12 NYGKRLGKINKFWAKCVGSCHATTALREDWRKQLKKCRDELGFEYIRFHGWLNDDMSVCF 71 Query: 365 -----------HITDSTGDKLLEEKTKKFI-MEHRQNYTGQGDDLIYHSKGHALNPGQRD 222 DS D LLE K FI + G ++H KG+ P Sbjct: 72 RNDDGLLSFSFFNIDSIIDFLLEIGMKPFIELSFMPEALASGTKTVFHYKGNITPP---- 127 Query: 221 WTRYQPWEPKKEE 183 Y+ W EE Sbjct: 128 -KSYEEWGQLIEE 139 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,297,525 Number of Sequences: 219361 Number of extensions: 1637620 Number of successful extensions: 4340 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4217 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4330 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
