Clone Information

BLAST Search Result

Clone Name	rbags12g10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|BT009037.1\| Triticum aestivum clone wdk5c.pk0001.d10:fis, ful...	761	0.0
2	gb\|BT019035.1\| Zea mays clone Contig552.F mRNA sequence	264	3e-67
3	gb\|AY105079.1\| Zea mays PCO107820 mRNA sequence	264	3e-67
4	ref\|XM_550320.1\| Oryza sativa (japonica cultivar-group), mRNA	226	6e-56
5	dbj\|AK103230.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	226	6e-56
6	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	139	1e-29
7	dbj\|AP002523.1\| Oryza sativa (japonica cultivar-group) genomic D...	139	1e-29
8	emb\|AL133167.4\|CNS01DU1 Human chromosome 14 DNA sequence BAC R-1...	44	0.49
9	emb\|AL512665.11\| Human DNA sequence from clone RP11-88H9 on chro...	42	1.9
10	emb\|AL353600.10\| Human DNA sequence from clone RP11-90B22 on chr...	42	1.9
11	gb\|AC146144.2\| Pan troglodytes BAC clone RP43-37J17 from 7, comp...	40	7.7
12	gb\|AC146041.2\| Pan troglodytes BAC clone RP43-98A7 from 7, compl...	40	7.7
13	gb\|AC124441.5\| Mus musculus BAC clone RP24-176L17 from chromosom...	40	7.7
14	gb\|AC122885.4\| Mus musculus BAC clone RP23-90H14 from chromosome...	40	7.7
15	gb\|AC146378.2\| Pan troglodytes BAC clone RP43-93I8 from 7, compl...	40	7.7
16	emb\|CR713366.2\|CNS0GDDU Tetraodon nigroviridis full-length cDNA	40	7.7
17	gb\|AC163214.4\| Mus musculus chromosome 5, clone RP23-467O1, comp...	40	7.7
18	gb\|AC157929.6\| Mus musculus chromosome 5, clone RP24-122G17, com...	40	7.7
19	ref\|XM_962063.1\| PREDICTED: Tribolium castaneum similar to CG120...	40	7.7
20	gb\|AC024563.6\| Homo sapiens chromosome 19 clone CTC-451A6, compl...	40	7.7
21	gb\|AC011467.7\| Homo sapiens chromosome 19 clone CTC-457E21, comp...	40	7.7
22	gb\|AC105129.4\| Homo sapiens chromosome 15, clone RP11-349G13, co...	40	7.7
23	gb\|AC008541.6\| Homo sapiens chromosome 5 clone CTC-498M5, comple...	40	7.7
24	gb\|AC026773.6\| Homo sapiens chromosome 5 clone CTC-230L18, compl...	40	7.7
25	gb\|AC008626.6\| Homo sapiens chromosome 19 clone CTB-159G17, comp...	40	7.7
26	gb\|AC154618.2\| Mus musculus BAC clone RP23-321M11 from chromosom...	40	7.7
27	gb\|AC159040.2\| Pan troglodytes BAC clone CH251-149A3 from chromo...	40	7.7
28	gb\|AC154584.3\| Mus musculus BAC clone RP23-248M3 from chromosome...	40	7.7
29	emb\|AL163760.4\|CNS01RI7 Human chromosome 14 DNA sequence BAC R-6...	40	7.7
30	emb\|CR394552.9\| Zebrafish DNA sequence from clone DKEYP-109B10 i...	40	7.7
31	gb\|AE000782.1\| Archaeoglobus fulgidus DSM 4304, complete genome	40	7.7
32	gb\|AC116521.15\| Mus musculus chromosome 5, clone RP24-343N10, co...	40	7.7
33	dbj\|AP006349.1\| Lotus japonicus genomic DNA, chromosome 5, clone...	40	7.7

>gb|BT009037.1| Triticum aestivum clone wdk5c.pk0001.d10:fis, full insert mRNA
            sequence
          Length = 1200

 Score =  761 bits (384), Expect = 0.0
 Identities = 510/547 (93%), Gaps = 9/547 (1%)
 Strand = Plus / Minus

                                                                        
Query: 22   cacatggtnctaagcataaacgtaactggaagttgccaatgcata--acgtctgaaccaa 79
            |||||||| ||||||||||||||||  ||||||||||||||||||  |||||||||||||
Sbjct: 1080 cacatggtactaagcataaacgtaaa-ggaagttgccaatgcatataacgtctgaaccaa 1022

                                                                        
Query: 80   caaagcagtatcccgcatgatcagcctagaaaccagcacgtcaggatgcggcgaaatggt 139
            |||||| ||||||| | ||||||||||| | ||||||||||||||||| |||||| ||||
Sbjct: 1021 caaagcggtatcccacgtgatcagccta-agaccagcacgtcaggatgtggcgaagtggt 963

                                                                        
Query: 140  cgcttcaagtcagatttgcaccaagagtccttcgaccatccgccatgctcccggatgata 199
            ||||||||||||||||||||   | |||||||||| ||||||||||||||| ||||||||
Sbjct: 962  cgcttcaagtcagatttgca---atagtccttcgagcatccgccatgctcctggatgata 906

                                                                        
Query: 200  tgtgtgcatgaactatgacttcaaaccttctgctttaactgcttatcctctgaaagaaat 259
            ||  ||||||||||| |||||||   |||||||| |||||||||||||||||||||||||
Sbjct: 905  tgcatgcatgaactacgacttcat--cttctgctctaactgcttatcctctgaaagaaat 848

                                                                        
Query: 260  agaggtatcccatgtccttgggcaggtcaacagatgcagccaccttattgtcgttgaaga 319
            |||||||||||||||||||||||||||| || |||||||| ||||||||||| |||||||
Sbjct: 847  agaggtatcccatgtccttgggcaggtcgaccgatgcagcaaccttattgtcattgaaga 788

                                                                        
Query: 320  ttgtccacctcccatctttgaggatatgggcgacatagtgcccacagtgtgtagaggttc 379
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787  tcgtccacctcccatctttgaggatatgggcgacatagtgcccacagtgtgtagaggttc 728

                                                                        
Query: 380  ccatgtggctcacaaatgccgtcagcttgtatctgccacttccatctgatatgtgcgagt 439
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 727  ccatgtggctcacaaatgccatcagcttgtatctgccacttccatctgatatgtgcgagt 668

                                                                        
Query: 440  tgtcatcttttacagtgcttgttgaagaatcagcagatacagagttagatgcttcagggt 499
             ||||||||||||| || |||||||||| ||||||||||||||| |||||||||||||||
Sbjct: 667  cgtcatcttttacattgtttgttgaagagtcagcagatacagagctagatgcttcagggt 608

                                                                        
Query: 500  ggctgaaaacccactccgtggctctctcaatatttccaccagaagctttcaaggccattc 559
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 607  ggctgaaaacccactccgtggctctctcaatatttccaccggaagctttcaaggccattc 548

                   
Query: 560  gggaaac 566
            |||||||
Sbjct: 547  gggaaac 541

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>gb|BT019035.1| Zea mays clone Contig552.F mRNA sequence
          Length = 1262

 Score =  264 bits (133), Expect = 3e-67
 Identities = 271/317 (85%)
 Strand = Plus / Minus

                                                                        
Query: 239  tgcttatcctctgaaagaaatagaggtatcccatgtccttgggcaggtcaacagatgcag 298
            |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||| | |
Sbjct: 1034 tgctaatcctctgaaagaaatagaggtagcccatttccttgggcaggtcaacagatactg 975

                                                                        
Query: 299  ccaccttattgtcgttgaagattgtccacctcccatctttgaggatatgggcgacatagt 358
            | |||||  ||||||| ||||||||||||||||| |||||||||| ||| || || ||||
Sbjct: 974  cgaccttgctgtcgttaaagattgtccacctcccgtctttgaggacatgagctacgtagt 915

                                                                        
Query: 359  gcccacagtgtgtagaggttcccatgtggctcacaaatgccgtcagcttgtatctgccac 418
            |||| ||||| |||||||| ||||| |||||||| || ||| ||||||||||||||||||
Sbjct: 914  gcccgcagtgggtagaggtgcccatatggctcacgaacgccatcagcttgtatctgccac 855

                                                                        
Query: 419  ttccatctgatatgtgcgagttgtcatcttttacagtgcttgttgaagaatcagcagata 478
            |||||||||  || |  | ||  ||| | |||||| |||| || ||||||||||||||| 
Sbjct: 854  ttccatctggaatatatgtgtcatcagcatttacattgctagtggaagaatcagcagatg 795

                                                                        
Query: 479  cagagttagatgcttcagggtggctgaaaacccactccgtggctctctcaatatttccac 538
            | ||| |||||||||| ||||||||||||| ||| || || ||| |||| ||||| ||||
Sbjct: 794  ctgaggtagatgcttcggggtggctgaaaatccagtctgtagctttctcgatattaccac 735

                             
Query: 539  cagaagctttcaaggcc 555
            |||||||||||| ||||
Sbjct: 734  cagaagctttcagggcc 718

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>gb|AY105079.1| Zea mays PCO107820 mRNA sequence
          Length = 2648

 Score =  264 bits (133), Expect = 3e-67
 Identities = 271/317 (85%)
 Strand = Plus / Minus

                                                                        
Query: 239  tgcttatcctctgaaagaaatagaggtatcccatgtccttgggcaggtcaacagatgcag 298
            |||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||| | |
Sbjct: 2437 tgctaatcctctgaaagaaatagaggtagcccatttccttgggcaggtcaacagatactg 2378

                                                                        
Query: 299  ccaccttattgtcgttgaagattgtccacctcccatctttgaggatatgggcgacatagt 358
            | |||||  ||||||| ||||||||||||||||| |||||||||| ||| || || ||||
Sbjct: 2377 cgaccttgctgtcgttaaagattgtccacctcccgtctttgaggacatgagctacgtagt 2318

                                                                        
Query: 359  gcccacagtgtgtagaggttcccatgtggctcacaaatgccgtcagcttgtatctgccac 418
            |||| ||||| |||||||| ||||| |||||||| || ||| ||||||||||||||||||
Sbjct: 2317 gcccgcagtgggtagaggtgcccatatggctcacgaacgccatcagcttgtatctgccac 2258

                                                                        
Query: 419  ttccatctgatatgtgcgagttgtcatcttttacagtgcttgttgaagaatcagcagata 478
            |||||||||  || |  | ||  ||| | |||||| |||| || ||||||||||||||| 
Sbjct: 2257 ttccatctggaatatatgtgtcatcagcatttacattgctagtggaagaatcagcagatg 2198

                                                                        
Query: 479  cagagttagatgcttcagggtggctgaaaacccactccgtggctctctcaatatttccac 538
            | ||| |||||||||| ||||||||||||| ||| || || ||| |||| ||||| ||||
Sbjct: 2197 ctgaggtagatgcttcggggtggctgaaaatccagtctgtagctttctcgatattaccac 2138

                             
Query: 539  cagaagctttcaaggcc 555
            |||||||||||| ||||
Sbjct: 2137 cagaagctttcagggcc 2121

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>ref|XM_550320.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2910

 Score =  226 bits (114), Expect = 6e-56
 Identities = 267/318 (83%)
 Strand = Plus / Minus

                                                                        
Query: 243  tatcctctgaaagaaatagaggtatcccatgtccttgggcaggtcaacagatgcagccac 302
            |||||| ||||||||||| ||||||||||| |||||||||| ||| ||||| ||||| ||
Sbjct: 2507 tatcctttgaaagaaatacaggtatcccatatccttgggcaagtcgacagaggcagcaac 2448

                                                                        
Query: 303  cttattgtcgttgaagattgtccacctcccatctttgaggatatgggcgacatagtgccc 362
            |||| | || ||||| |||  ||||||||| |||||||||| |||||| || ||||||||
Sbjct: 2447 cttactatcattgaatattacccacctcccgtctttgaggacatgggcaacgtagtgccc 2388

                                                                        
Query: 363  acagtgtgtagaggttcccatgtggctcacaaatgccgtcagcttgtatctgccacttcc 422
            ||| || |||||||| ||||| ||||||||||| ||| |||  |||||||||||||||||
Sbjct: 2387 acaatgggtagaggtgcccatatggctcacaaacgccatcaatttgtatctgccacttcc 2328

                                                                        
Query: 423  atctgatatgtgcgagttgtcatcttttacagtgcttgttgaagaatcagcagatacaga 482
            ||||| |||||| |  |  |||||||  | | |||||||||||||||||| || ||| ||
Sbjct: 2327 atctggtatgtgtgcatcatcatcttccatattgcttgttgaagaatcagtaggtactga 2268

                                                                        
Query: 483  gttagatgcttcagggtggctgaaaacccactccgtggctctctcaatatttccaccaga 542
            | || | || ||||||||||| |||| ||| || || |||||||| ||||||||||||||
Sbjct: 2267 gctaaaagcctcagggtggctaaaaatccagtctgttgctctctcgatatttccaccaga 2208

                              
Query: 543  agctttcaaggccattcg 560
            ||||  ||||||| ||||
Sbjct: 2207 agctgccaaggcctttcg 2190

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>dbj|AK103230.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033123D13, full
            insert sequence
          Length = 2910

 Score =  226 bits (114), Expect = 6e-56
 Identities = 267/318 (83%)
 Strand = Plus / Minus

                                                                        
Query: 243  tatcctctgaaagaaatagaggtatcccatgtccttgggcaggtcaacagatgcagccac 302
            |||||| ||||||||||| ||||||||||| |||||||||| ||| ||||| ||||| ||
Sbjct: 2507 tatcctttgaaagaaatacaggtatcccatatccttgggcaagtcgacagaggcagcaac 2448

                                                                        
Query: 303  cttattgtcgttgaagattgtccacctcccatctttgaggatatgggcgacatagtgccc 362
            |||| | || ||||| |||  ||||||||| |||||||||| |||||| || ||||||||
Sbjct: 2447 cttactatcattgaatattacccacctcccgtctttgaggacatgggcaacgtagtgccc 2388

                                                                        
Query: 363  acagtgtgtagaggttcccatgtggctcacaaatgccgtcagcttgtatctgccacttcc 422
            ||| || |||||||| ||||| ||||||||||| ||| |||  |||||||||||||||||
Sbjct: 2387 acaatgggtagaggtgcccatatggctcacaaacgccatcaatttgtatctgccacttcc 2328

                                                                        
Query: 423  atctgatatgtgcgagttgtcatcttttacagtgcttgttgaagaatcagcagatacaga 482
            ||||| |||||| |  |  |||||||  | | |||||||||||||||||| || ||| ||
Sbjct: 2327 atctggtatgtgtgcatcatcatcttccatattgcttgttgaagaatcagtaggtactga 2268

                                                                        
Query: 483  gttagatgcttcagggtggctgaaaacccactccgtggctctctcaatatttccaccaga 542
            | || | || ||||||||||| |||| ||| || || |||||||| ||||||||||||||
Sbjct: 2267 gctaaaagcctcagggtggctaaaaatccagtctgttgctctctcgatatttccaccaga 2208

                              
Query: 543  agctttcaaggccattcg 560
            ||||  ||||||| ||||
Sbjct: 2207 agctgccaaggcctttcg 2190

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  139 bits (70), Expect = 1e-29
 Identities = 145/170 (85%)
 Strand = Plus / Minus

                                                                           
Query: 243     tatcctctgaaagaaatagaggtatcccatgtccttgggcaggtcaacagatgcagccac 302
               |||||| ||||||||||| ||||||||||| |||||||||| ||| ||||| ||||| ||
Sbjct: 3993995 tatcctttgaaagaaatacaggtatcccatatccttgggcaagtcgacagaggcagcaac 3993936

                                                                           
Query: 303     cttattgtcgttgaagattgtccacctcccatctttgaggatatgggcgacatagtgccc 362
               |||| | || ||||| |||  ||||||||| |||||||||| |||||| || ||||||||
Sbjct: 3993935 cttactatcattgaatattacccacctcccgtctttgaggacatgggcaacgtagtgccc 3993876

                                                                 
Query: 363     acagtgtgtagaggttcccatgtggctcacaaatgccgtcagcttgtatc 412
               ||| || |||||||| ||||| ||||||||||| ||| |||  |||||||
Sbjct: 3993875 acaatgggtagaggtgcccatatggctcacaaacgccatcaatttgtatc 3993826



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 105/128 (82%)
 Strand = Plus / Minus

                                                                           
Query: 412     ctgccacttccatctgatatgtgcgagttgtcatcttttacagtgcttgttgaagaatca 471
               |||||||||||||||| |||||| |  |  |||||||  | | |||||||||||||||||
Sbjct: 3993373 ctgccacttccatctggtatgtgtgcatcatcatcttccatattgcttgttgaagaatca 3993314

                                                                           
Query: 472     gcagatacagagttagatgcttcagggtggctgaaaacccactccgtggctctctcaata 531
               | || ||| ||| || | || ||||||||||| |||| ||| || || |||||||| |||
Sbjct: 3993313 gtaggtactgagctaaaagcctcagggtggctaaaaatccagtctgttgctctctcgata 3993254

                       
Query: 532     tttccacc 539
               ||||||||
Sbjct: 3993253 tttccacc 3993246

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>dbj|AP002523.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0013F10
          Length = 163095

 Score =  139 bits (70), Expect = 1e-29
 Identities = 145/170 (85%)
 Strand = Plus / Minus

                                                                          
Query: 243    tatcctctgaaagaaatagaggtatcccatgtccttgggcaggtcaacagatgcagccac 302
              |||||| ||||||||||| ||||||||||| |||||||||| ||| ||||| ||||| ||
Sbjct: 115899 tatcctttgaaagaaatacaggtatcccatatccttgggcaagtcgacagaggcagcaac 115840

                                                                          
Query: 303    cttattgtcgttgaagattgtccacctcccatctttgaggatatgggcgacatagtgccc 362
              |||| | || ||||| |||  ||||||||| |||||||||| |||||| || ||||||||
Sbjct: 115839 cttactatcattgaatattacccacctcccgtctttgaggacatgggcaacgtagtgccc 115780

                                                                
Query: 363    acagtgtgtagaggttcccatgtggctcacaaatgccgtcagcttgtatc 412
              ||| || |||||||| ||||| ||||||||||| ||| |||  |||||||
Sbjct: 115779 acaatgggtagaggtgcccatatggctcacaaacgccatcaatttgtatc 115730



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 105/128 (82%)
 Strand = Plus / Minus

                                                                          
Query: 412    ctgccacttccatctgatatgtgcgagttgtcatcttttacagtgcttgttgaagaatca 471
              |||||||||||||||| |||||| |  |  |||||||  | | |||||||||||||||||
Sbjct: 115277 ctgccacttccatctggtatgtgtgcatcatcatcttccatattgcttgttgaagaatca 115218

                                                                          
Query: 472    gcagatacagagttagatgcttcagggtggctgaaaacccactccgtggctctctcaata 531
              | || ||| ||| || | || ||||||||||| |||| ||| || || |||||||| |||
Sbjct: 115217 gtaggtactgagctaaaagcctcagggtggctaaaaatccagtctgttgctctctcgata 115158

                      
Query: 532    tttccacc 539
              ||||||||
Sbjct: 115157 tttccacc 115150

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>emb|AL133167.4|CNS01DU1 Human chromosome 14 DNA sequence BAC R-185P18 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 163096

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 324    ccacctcccatctttgaggata 345
              ||||||||||||||||||||||
Sbjct: 135328 ccacctcccatctttgaggata 135349

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>emb|AL512665.11| Human DNA sequence from clone RP11-88H9 on chromosome 1 Contains the 5'
              end of the KCND3 gen for potassium voltage-gated channel
              Shal-related subfamily member 3, two novel genes and two
              CpG islands, complete sequence
          Length = 169599

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 463    gaagaatcagcagatacagagttag 487
              |||||||||| ||||||||||||||
Sbjct: 119926 gaagaatcaggagatacagagttag 119950

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>emb|AL353600.10| Human DNA sequence from clone RP11-90B22 on chromosome 10 Contains the
             5' end of the NRP1 gene for neuropilin 1, a novel gene and
             a CpG island, complete sequence
          Length = 124540

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 533   ttccaccagaagctttcaagg 553
             |||||||||||||||||||||
Sbjct: 41163 ttccaccagaagctttcaagg 41143

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>gb|AC146144.2| Pan troglodytes BAC clone RP43-37J17 from 7, complete sequence
          Length = 206029

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 240    gcttatcctctgaaagaaatagag 263
              ||||||||||||| ||||||||||
Sbjct: 196665 gcttatcctctgagagaaatagag 196642

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>gb|AC146041.2| Pan troglodytes BAC clone RP43-98A7 from 7, complete sequence
          Length = 120644

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 240   gcttatcctctgaaagaaatagag 263
             ||||||||||||| ||||||||||
Sbjct: 61558 gcttatcctctgagagaaatagag 61581

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>gb|AC124441.5| Mus musculus BAC clone RP24-176L17 from chromosome 18, complete sequence
          Length = 190119

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 370    gtagaggttcccatgtggct 389
              ||||||||||||||||||||
Sbjct: 146899 gtagaggttcccatgtggct 146880

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>gb|AC122885.4| Mus musculus BAC clone RP23-90H14 from chromosome 14, complete sequence
          Length = 186387

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 459    tgttgaagaatcagcagata 478
              ||||||||||||||||||||
Sbjct: 119865 tgttgaagaatcagcagata 119846

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>gb|AC146378.2| Pan troglodytes BAC clone RP43-93I8 from 7, complete sequence
          Length = 135955

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 240    gcttatcctctgaaagaaatagag 263
              ||||||||||||| ||||||||||
Sbjct: 104585 gcttatcctctgagagaaatagag 104608

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>emb|CR713366.2|CNS0GDDU Tetraodon nigroviridis full-length cDNA
          Length = 491

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 254 agaaatagaggtatcccatgtccttggg 281
           |||| ||||||||||||||||| |||||
Sbjct: 65  agaagtagaggtatcccatgtctttggg 38

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>gb|AC163214.4| Mus musculus chromosome 5, clone RP23-467O1, complete sequence
          Length = 200882

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 524   tctcaatatttccaccagaa 543
             ||||||||||||||||||||
Sbjct: 25271 tctcaatatttccaccagaa 25290

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>gb|AC157929.6| Mus musculus chromosome 5, clone RP24-122G17, complete sequence
          Length = 193178

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 524   tctcaatatttccaccagaa 543
             ||||||||||||||||||||
Sbjct: 45430 tctcaatatttccaccagaa 45411

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>ref|XM_962063.1| PREDICTED: Tribolium castaneum similar to CG12082-PA (LOC655510),
            mRNA
          Length = 2385

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 297  agccaccttattgtcgttgaagat 320
            |||||||||||||||||| |||||
Sbjct: 2328 agccaccttattgtcgttaaagat 2305

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>gb|AC024563.6| Homo sapiens chromosome 19 clone CTC-451A6, complete sequence
          Length = 158541

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 248   tctgaaagaaatagaggtat 267
             ||||||||||||||||||||
Sbjct: 88831 tctgaaagaaatagaggtat 88812

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>gb|AC011467.7| Homo sapiens chromosome 19 clone CTC-457E21, complete sequence
          Length = 187888

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 248  tctgaaagaaatagaggtat 267
            ||||||||||||||||||||
Sbjct: 1670 tctgaaagaaatagaggtat 1689

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>gb|AC105129.4| Homo sapiens chromosome 15, clone RP11-349G13, complete sequence
          Length = 198295

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 269    ccatgtccttgggcaggtca 288
              ||||||||||||||||||||
Sbjct: 120698 ccatgtccttgggcaggtca 120679

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>gb|AC008541.6| Homo sapiens chromosome 5 clone CTC-498M5, complete sequence
          Length = 148043

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 524   tctcaatatttccaccagaagctt 547
             |||||||||||||| |||||||||
Sbjct: 64094 tctcaatatttccaacagaagctt 64071

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>gb|AC026773.6| Homo sapiens chromosome 5 clone CTC-230L18, complete sequence
          Length = 130965

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 524    tctcaatatttccaccagaagctt 547
              |||||||||||||| |||||||||
Sbjct: 127828 tctcaatatttccaacagaagctt 127805

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>gb|AC008626.6| Homo sapiens chromosome 19 clone CTB-159G17, complete sequence
          Length = 155439

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 248  tctgaaagaaatagaggtat 267
            ||||||||||||||||||||
Sbjct: 4118 tctgaaagaaatagaggtat 4099

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>gb|AC154618.2| Mus musculus BAC clone RP23-321M11 from chromosome 14, complete sequence
          Length = 209522

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 459    tgttgaagaatcagcagata 478
              ||||||||||||||||||||
Sbjct: 143082 tgttgaagaatcagcagata 143101

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>gb|AC159040.2| Pan troglodytes BAC clone CH251-149A3 from chromosome unknown, complete
             sequence
          Length = 174983

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    aatgcataacgtctgaacca 78
             ||||||||||||||||||||
Sbjct: 62564 aatgcataacgtctgaacca 62583

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>gb|AC154584.3| Mus musculus BAC clone RP23-248M3 from chromosome 13, complete sequence
          Length = 166580

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 473   cagatacagagttagatgct 492
             ||||||||||||||||||||
Sbjct: 61869 cagatacagagttagatgct 61850

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>emb|AL163760.4|CNS01RI7 Human chromosome 14 DNA sequence BAC R-68I8 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 174860

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    ccttctgctttaactgctta 244
              ||||||||||||||||||||
Sbjct: 104548 ccttctgctttaactgctta 104529

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>emb|CR394552.9| Zebrafish DNA sequence from clone DKEYP-109B10 in linkage group 25,
             complete sequence
          Length = 196037

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   aaaccagcacgtcaggatgc 128
             ||||||||||||||||||||
Sbjct: 95282 aaaccagcacgtcaggatgc 95263

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>gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome
          Length = 2178400

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 271     atgtccttgggcaggtcaac 290
               ||||||||||||||||||||
Sbjct: 1541008 atgtccttgggcaggtcaac 1541027

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>gb|AC116521.15| Mus musculus chromosome 5, clone RP24-343N10, complete sequence
          Length = 169411

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 524   tctcaatatttccaccagaa 543
             ||||||||||||||||||||
Sbjct: 44472 tctcaatatttccaccagaa 44491

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>dbj|AP006349.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT48J22, TM0335a,
            complete sequence
          Length = 49197

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 535  ccaccagaagctttcaaggc 554
            ||||||||||||||||||||
Sbjct: 8057 ccaccagaagctttcaaggc 8038


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,457,578
Number of Sequences: 3902068
Number of extensions: 4457578
Number of successful extensions: 72810
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72716
Number of HSP's gapped (non-prelim): 89
length of query: 566
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 543
effective length of database: 17,143,297,704
effective search space: 9308810653272
effective search space used: 9308810653272
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result