ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags12f15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC135104.22| Mus musculus strain C57BL/6J clone rp23-206l6, c... 46 0.13
2emb|AL645684.16| Mouse DNA sequence from clone RP23-35E7 on chro... 46 0.13
3ref|XM_362091.1| Magnaporthe grisea 70-15 hypothetical protein (... 44 0.50
4emb|AL023534.1|SPBC3E7 S.pombe chromosome II cosmid c3E7 42 2.0
5emb|BX901939.10| Zebrafish DNA sequence from clone CH211-263C17 ... 42 2.0
6emb|BX677671.6| Mouse DNA sequence from clone RP23-468K6 on chro... 42 2.0
7ref|NM_204800.1| Gallus gallus sprouty homolog 2 (Drosophila) (S... 40 7.8
8gb|AC005741.1| Homo sapiens chromosome 5, BAC clone 147L15 (LBNL... 40 7.8
9gb|AC123954.4| Mus musculus BAC clone RP23-249L6 from 13, comple... 40 7.8
10gb|AC160978.4| Mus musculus BAC clone RP23-426B17 from chromosom... 40 7.8
11gb|AC087500.16| Homo sapiens chromosome 17, clone RP11-333E1, co... 40 7.8
12gb|AC025048.8| Homo sapiens chromosome 17, clone CTD-2319I12, co... 40 7.8
13dbj|BS000656.1| Pan troglodytes chromosome Y clone:PTBY-001H21, ... 40 7.8
14dbj|BS000657.1| Pan troglodytes chromosome Y clone:PTBY-002C07, ... 40 7.8
15gb|AC012146.25| Homo sapiens chromosome 17, clone RP11-46I8, com... 40 7.8
16gb|AC097314.27| Homo sapiens X BAC RP11-155F12 (Roswell Park Can... 40 7.8
17gb|AC096731.3| Homo sapiens BAC clone RP11-72C15 from 4, complet... 40 7.8
18gb|AC106814.3| Homo sapiens chromosome 16 clone RP11-625E3, comp... 40 7.8
19gb|AC104763.12| Homo sapiens chromosome 17, clone RP11-3K24, com... 40 7.8
20gb|AC092575.3| Homo sapiens BAC clone RP11-4C18 from 2, complete... 40 7.8
21gb|AF176904.1|AF176904 Gallus gallus sprouty 2 (Spry2) mRNA, com... 40 7.8
22emb|AL671299.18| Mouse DNA sequence from clone RP23-281K21 on ch... 40 7.8
23emb|AL591976.1| Listeria monocytogenes strain EGD, complete geno... 40 7.8
24gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete ge... 40 7.8

>gb|AC135104.22| Mus musculus strain C57BL/6J clone rp23-206l6, complete sequence
          Length = 198294

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 341    caggaagaagaaaatacaactggcttg 367
              |||||||||||||| ||||||||||||
Sbjct: 100785 caggaagaagaaaacacaactggcttg 100811



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>emb|AL645684.16| Mouse DNA sequence from clone RP23-35E7 on chromosome 11, complete
             sequence
          Length = 122461

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 341   caggaagaagaaaatacaactggcttg 367
             |||||||||||||| ||||||||||||
Sbjct: 38670 caggaagaagaaaacacaactggcttg 38644



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>ref|XM_362091.1| Magnaporthe grisea 70-15 hypothetical protein (MG04536.4) partial cds
          Length = 2883

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 417  caacaatgtgaccatgcccagt 438
            ||||||||||||||||||||||
Sbjct: 2229 caacaatgtgaccatgcccagt 2250



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>emb|AL023534.1|SPBC3E7 S.pombe chromosome II cosmid c3E7
          Length = 34642

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 60    aaatgatataccttatactaa 80
             |||||||||||||||||||||
Sbjct: 26787 aaatgatataccttatactaa 26807



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>emb|BX901939.10| Zebrafish DNA sequence from clone CH211-263C17 in linkage group 4,
              complete sequence
          Length = 181802

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 339    ctcaggaagaagaaaatacaa 359
              |||||||||||||||||||||
Sbjct: 143192 ctcaggaagaagaaaatacaa 143212



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>emb|BX677671.6| Mouse DNA sequence from clone RP23-468K6 on chromosome X, complete
             sequence
          Length = 118239

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 339   ctcaggaagaagaaaatacaa 359
             |||||||||||||||||||||
Sbjct: 33907 ctcaggaagaagaaaatacaa 33887



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>ref|NM_204800.1| Gallus gallus sprouty homolog 2 (Drosophila) (SPRY2), mRNA
          Length = 1889

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 341 caggaagaagaaaatacaac 360
           ||||||||||||||||||||
Sbjct: 51  caggaagaagaaaatacaac 70



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>gb|AC005741.1| Homo sapiens chromosome 5, BAC clone 147L15 (LBNL H90), complete sequence
          Length = 119196

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 395    gttctttatccctctgtttg 414
              ||||||||||||||||||||
Sbjct: 100613 gttctttatccctctgtttg 100594



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>gb|AC123954.4| Mus musculus BAC clone RP23-249L6 from 13, complete sequence
          Length = 200727

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 380   ttctgacttttgagggttctttat 403
             ||||||||||||||||| ||||||
Sbjct: 38560 ttctgacttttgagggtactttat 38537



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>gb|AC160978.4| Mus musculus BAC clone RP23-426B17 from chromosome 13, complete sequence
          Length = 197652

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 380    ttctgacttttgagggttctttat 403
              ||||||||||||||||| ||||||
Sbjct: 159865 ttctgacttttgagggtactttat 159842



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>gb|AC087500.16| Homo sapiens chromosome 17, clone RP11-333E1, complete sequence
          Length = 170770

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 342    aggaagaagaaaatacaactggct 365
              ||||| ||||||||||||||||||
Sbjct: 154837 aggaaaaagaaaatacaactggct 154860



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>gb|AC025048.8| Homo sapiens chromosome 17, clone CTD-2319I12, complete sequence
          Length = 137921

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 342    aggaagaagaaaatacaactggct 365
              ||||| ||||||||||||||||||
Sbjct: 135164 aggaaaaagaaaatacaactggct 135187



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>dbj|BS000656.1| Pan troglodytes chromosome Y clone:PTBY-001H21, complete sequences
          Length = 111374

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 550   aaaaaagtttccatctaagc 569
             ||||||||||||||||||||
Sbjct: 81211 aaaaaagtttccatctaagc 81230



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>dbj|BS000657.1| Pan troglodytes chromosome Y clone:PTBY-002C07, complete sequences
          Length = 109804

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 550   aaaaaagtttccatctaagc 569
             ||||||||||||||||||||
Sbjct: 95693 aaaaaagtttccatctaagc 95712



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>gb|AC012146.25| Homo sapiens chromosome 17, clone RP11-46I8, complete sequence
          Length = 171309

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 342   aggaagaagaaaatacaactggct 365
             ||||| ||||||||||||||||||
Sbjct: 13264 aggaaaaagaaaatacaactggct 13287



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>gb|AC097314.27| Homo sapiens X BAC RP11-155F12 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 80501

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 550   aaaaaagtttccatctaagc 569
             ||||||||||||||||||||
Sbjct: 28334 aaaaaagtttccatctaagc 28315



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>gb|AC096731.3| Homo sapiens BAC clone RP11-72C15 from 4, complete sequence
          Length = 91203

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    tacctttaatgaaaatgata 67
             ||||||||||||||||||||
Sbjct: 31573 tacctttaatgaaaatgata 31592



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>gb|AC106814.3| Homo sapiens chromosome 16 clone RP11-625E3, complete sequence
          Length = 170070

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 328   acaggggtggcctcaggaag 347
             ||||||||||||||||||||
Sbjct: 80343 acaggggtggcctcaggaag 80324



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>gb|AC104763.12| Homo sapiens chromosome 17, clone RP11-3K24, complete sequence
          Length = 163418

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 342   aggaagaagaaaatacaactggct 365
             ||||| ||||||||||||||||||
Sbjct: 22400 aggaaaaagaaaatacaactggct 22423



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>gb|AC092575.3| Homo sapiens BAC clone RP11-4C18 from 2, complete sequence
          Length = 120927

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 43    cttcatacctttaatgaaaatgat 66
             |||||||| |||||||||||||||
Sbjct: 36948 cttcatacatttaatgaaaatgat 36925



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>gb|AF176904.1|AF176904 Gallus gallus sprouty 2 (Spry2) mRNA, complete cds
          Length = 1889

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 341 caggaagaagaaaatacaac 360
           ||||||||||||||||||||
Sbjct: 51  caggaagaagaaaatacaac 70



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>emb|AL671299.18| Mouse DNA sequence from clone RP23-281K21 on chromosome X, complete
             sequence
          Length = 214997

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 342   aggaagaagaaaatacaact 361
             ||||||||||||||||||||
Sbjct: 13973 aggaagaagaaaatacaact 13992



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>emb|AL591976.1| Listeria monocytogenes strain EGD, complete genome, segment 4/12
          Length = 250050

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 43     cttcatacctttaatgaaaa 62
              ||||||||||||||||||||
Sbjct: 233921 cttcatacctttaatgaaaa 233940



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>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome
          Length = 2905187

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 43     cttcatacctttaatgaaaa 62
              ||||||||||||||||||||
Sbjct: 873926 cttcatacctttaatgaaaa 873945


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,963,987
Number of Sequences: 3902068
Number of extensions: 5963987
Number of successful extensions: 137243
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 137165
Number of HSP's gapped (non-prelim): 78
length of query: 576
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 553
effective length of database: 17,143,297,704
effective search space: 9480243630312
effective search space used: 9480243630312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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