| Clone Name | rbags12f15 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC135104.22| Mus musculus strain C57BL/6J clone rp23-206l6, complete sequence Length = 198294 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 341 caggaagaagaaaatacaactggcttg 367 |||||||||||||| |||||||||||| Sbjct: 100785 caggaagaagaaaacacaactggcttg 100811
>emb|AL645684.16| Mouse DNA sequence from clone RP23-35E7 on chromosome 11, complete sequence Length = 122461 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 341 caggaagaagaaaatacaactggcttg 367 |||||||||||||| |||||||||||| Sbjct: 38670 caggaagaagaaaacacaactggcttg 38644
>ref|XM_362091.1| Magnaporthe grisea 70-15 hypothetical protein (MG04536.4) partial cds Length = 2883 Score = 44.1 bits (22), Expect = 0.50 Identities = 22/22 (100%) Strand = Plus / Plus Query: 417 caacaatgtgaccatgcccagt 438 |||||||||||||||||||||| Sbjct: 2229 caacaatgtgaccatgcccagt 2250
>emb|AL023534.1|SPBC3E7 S.pombe chromosome II cosmid c3E7 Length = 34642 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 60 aaatgatataccttatactaa 80 ||||||||||||||||||||| Sbjct: 26787 aaatgatataccttatactaa 26807
>emb|BX901939.10| Zebrafish DNA sequence from clone CH211-263C17 in linkage group 4, complete sequence Length = 181802 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 339 ctcaggaagaagaaaatacaa 359 ||||||||||||||||||||| Sbjct: 143192 ctcaggaagaagaaaatacaa 143212
>emb|BX677671.6| Mouse DNA sequence from clone RP23-468K6 on chromosome X, complete sequence Length = 118239 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 339 ctcaggaagaagaaaatacaa 359 ||||||||||||||||||||| Sbjct: 33907 ctcaggaagaagaaaatacaa 33887
>ref|NM_204800.1| Gallus gallus sprouty homolog 2 (Drosophila) (SPRY2), mRNA Length = 1889 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 caggaagaagaaaatacaac 360 |||||||||||||||||||| Sbjct: 51 caggaagaagaaaatacaac 70
>gb|AC005741.1| Homo sapiens chromosome 5, BAC clone 147L15 (LBNL H90), complete sequence Length = 119196 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 gttctttatccctctgtttg 414 |||||||||||||||||||| Sbjct: 100613 gttctttatccctctgtttg 100594
>gb|AC123954.4| Mus musculus BAC clone RP23-249L6 from 13, complete sequence Length = 200727 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 380 ttctgacttttgagggttctttat 403 ||||||||||||||||| |||||| Sbjct: 38560 ttctgacttttgagggtactttat 38537
>gb|AC160978.4| Mus musculus BAC clone RP23-426B17 from chromosome 13, complete sequence Length = 197652 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 380 ttctgacttttgagggttctttat 403 ||||||||||||||||| |||||| Sbjct: 159865 ttctgacttttgagggtactttat 159842
>gb|AC087500.16| Homo sapiens chromosome 17, clone RP11-333E1, complete sequence Length = 170770 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 342 aggaagaagaaaatacaactggct 365 ||||| |||||||||||||||||| Sbjct: 154837 aggaaaaagaaaatacaactggct 154860
>gb|AC025048.8| Homo sapiens chromosome 17, clone CTD-2319I12, complete sequence Length = 137921 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 342 aggaagaagaaaatacaactggct 365 ||||| |||||||||||||||||| Sbjct: 135164 aggaaaaagaaaatacaactggct 135187
>dbj|BS000656.1| Pan troglodytes chromosome Y clone:PTBY-001H21, complete sequences Length = 111374 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 550 aaaaaagtttccatctaagc 569 |||||||||||||||||||| Sbjct: 81211 aaaaaagtttccatctaagc 81230
>dbj|BS000657.1| Pan troglodytes chromosome Y clone:PTBY-002C07, complete sequences Length = 109804 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 550 aaaaaagtttccatctaagc 569 |||||||||||||||||||| Sbjct: 95693 aaaaaagtttccatctaagc 95712
>gb|AC012146.25| Homo sapiens chromosome 17, clone RP11-46I8, complete sequence Length = 171309 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 342 aggaagaagaaaatacaactggct 365 ||||| |||||||||||||||||| Sbjct: 13264 aggaaaaagaaaatacaactggct 13287
>gb|AC097314.27| Homo sapiens X BAC RP11-155F12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 80501 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 550 aaaaaagtttccatctaagc 569 |||||||||||||||||||| Sbjct: 28334 aaaaaagtttccatctaagc 28315
>gb|AC096731.3| Homo sapiens BAC clone RP11-72C15 from 4, complete sequence Length = 91203 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 tacctttaatgaaaatgata 67 |||||||||||||||||||| Sbjct: 31573 tacctttaatgaaaatgata 31592
>gb|AC106814.3| Homo sapiens chromosome 16 clone RP11-625E3, complete sequence Length = 170070 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 acaggggtggcctcaggaag 347 |||||||||||||||||||| Sbjct: 80343 acaggggtggcctcaggaag 80324
>gb|AC104763.12| Homo sapiens chromosome 17, clone RP11-3K24, complete sequence Length = 163418 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 342 aggaagaagaaaatacaactggct 365 ||||| |||||||||||||||||| Sbjct: 22400 aggaaaaagaaaatacaactggct 22423
>gb|AC092575.3| Homo sapiens BAC clone RP11-4C18 from 2, complete sequence Length = 120927 Score = 40.1 bits (20), Expect = 7.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 cttcatacctttaatgaaaatgat 66 |||||||| ||||||||||||||| Sbjct: 36948 cttcatacatttaatgaaaatgat 36925
>gb|AF176904.1|AF176904 Gallus gallus sprouty 2 (Spry2) mRNA, complete cds Length = 1889 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 caggaagaagaaaatacaac 360 |||||||||||||||||||| Sbjct: 51 caggaagaagaaaatacaac 70
>emb|AL671299.18| Mouse DNA sequence from clone RP23-281K21 on chromosome X, complete sequence Length = 214997 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 aggaagaagaaaatacaact 361 |||||||||||||||||||| Sbjct: 13973 aggaagaagaaaatacaact 13992
>emb|AL591976.1| Listeria monocytogenes strain EGD, complete genome, segment 4/12 Length = 250050 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 cttcatacctttaatgaaaa 62 |||||||||||||||||||| Sbjct: 233921 cttcatacctttaatgaaaa 233940
>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome Length = 2905187 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 cttcatacctttaatgaaaa 62 |||||||||||||||||||| Sbjct: 873926 cttcatacctttaatgaaaa 873945 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,963,987 Number of Sequences: 3902068 Number of extensions: 5963987 Number of successful extensions: 137243 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 137165 Number of HSP's gapped (non-prelim): 78 length of query: 576 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 553 effective length of database: 17,143,297,704 effective search space: 9480243630312 effective search space used: 9480243630312 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)