ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags12f02 |
|---|---|
| Clone Library Name | barley_pub |
>VDAC1_SOLTU (P42055) 34 kDa outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) (POM 34) Length = 275 Score = 190 bits (482), Expect = 4e-48 Identities = 95/137 (69%), Positives = 110/137 (80%), Gaps = 2/137 (1%) Frame = -2 Query: 650 LAFGLDVAFDTASGDFTKYNAGMSHTNQDLTASLMLNNKGNTLAASYYHQVQ--LTTAVG 477 +A G DV+FDT +GDFTK NAG+S TN DL ASL LNNKG+ L ASYYH V +TAVG Sbjct: 139 IALGTDVSFDTKTGDFTKCNAGLSFTNADLVASLNLNNKGDNLTASYYHTVSPLTSTAVG 198 Query: 476 AEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFSTEVDT 297 AE+ HSFS+NEN ITVGTQH LDPLT++K R NNFG ASAL+QH WRPKS+ T S EVDT Sbjct: 199 AEVNHSFSTNENIITVGTQHRLDPLTSVKARINNFGKASALLQHEWRPKSLFTVSGEVDT 258 Query: 296 KAVEKSPKFGLALSLKP 246 K+V+K KFGLAL+LKP Sbjct: 259 KSVDKGAKFGLALALKP 275
>VDAC2_SOLTU (P42056) 36 kDa outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) (POM 36) Length = 275 Score = 184 bits (468), Expect = 2e-46 Identities = 90/137 (65%), Positives = 114/137 (83%), Gaps = 2/137 (1%) Frame = -2 Query: 650 LAFGLDVAFDTASGDFTKYNAGMSHTNQDLTASLMLNNKGNTLAASYYHQVQ--LTTAVG 477 +A G D++FDTA+G+FTK NAG+S ++ DL ASL LN+KG+T++ASYYH V+ TAVG Sbjct: 139 VALGTDLSFDTATGNFTKCNAGLSFSSSDLIASLALNDKGDTVSASYYHTVKPVTNTAVG 198 Query: 476 AEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFSTEVDT 297 AE+ HSFSSNENT+T+GTQH LDPLTT+K R N++G ASALIQH WRPKS+ T S EVDT Sbjct: 199 AELTHSFSSNENTLTIGTQHLLDPLTTVKARVNSYGKASALIQHEWRPKSLFTISGEVDT 258 Query: 296 KAVEKSPKFGLALSLKP 246 +A+EKS K GLA++LKP Sbjct: 259 RAIEKSAKIGLAVALKP 275
>VDAC1_ORYSA (Q6K548) Outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) Length = 273 Score = 183 bits (464), Expect = 4e-46 Identities = 91/136 (66%), Positives = 110/136 (80%), Gaps = 1/136 (0%) Frame = -2 Query: 650 LAFGLDVAFDTASGDFTKYNAGMSHTNQDLTASLMLNNKGNTLAASYYHQVQLT-TAVGA 474 LA G DV+ DTA+G+ TKYNAG+S +N DL ASL LNNKG++L ASYYH V + TAVGA Sbjct: 138 LAVGADVSLDTATGNLTKYNAGLSFSNDDLIASLNLNNKGDSLTASYYHIVNHSATAVGA 197 Query: 473 EIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFSTEVDTK 294 E+ HSFSSNEN++T GTQH LDPLT +K R+NN G ASAL+QH WRPKSV T S EVDTK Sbjct: 198 ELTHSFSSNENSLTFGTQHTLDPLTVVKARFNNSGKASALLQHEWRPKSVWTISAEVDTK 257 Query: 293 AVEKSPKFGLALSLKP 246 A++KS K G+A++LKP Sbjct: 258 AIDKSSKVGIAVALKP 273
>VDAC1_WHEAT (P46274) Outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) Length = 275 Score = 177 bits (450), Expect = 2e-44 Identities = 90/136 (66%), Positives = 109/136 (80%), Gaps = 1/136 (0%) Frame = -2 Query: 650 LAFGLDVAFDTASGDFTKYNAGMSHTNQDLTASLMLNNKGNTLAASYYHQVQLT-TAVGA 474 LA G DV+ DTA+ +F KYNA +S+TNQDL ASL LNNKG++L ASYYH V+ + TAVGA Sbjct: 140 LAVGADVSLDTATKNFAKYNAALSYTNQDLIASLNLNNKGDSLTASYYHIVEKSGTAVGA 199 Query: 473 EIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFSTEVDTK 294 E+ HSFSSNEN++T GTQH LDPLT +K R NN G ASALIQH + PKS+ T S EVDTK Sbjct: 200 ELTHSFSSNENSLTFGTQHTLDPLTLVKARINNSGKASALIQHEFMPKSLCTISAEVDTK 259 Query: 293 AVEKSPKFGLALSLKP 246 A+EKS K G+A++LKP Sbjct: 260 AIEKSSKVGIAIALKP 275
>VDAC1_ARATH (Q9SRH5) Outer mitochondrial membrane protein porin 1| (Voltage-dependent anion-selective channel protein 1) (VDAC 1) Length = 275 Score = 174 bits (442), Expect = 2e-43 Identities = 88/137 (64%), Positives = 107/137 (78%), Gaps = 2/137 (1%) Frame = -2 Query: 650 LAFGLDVAFDTASGDFTKYNAGMSHTNQDLTASLMLNNKGNTLAASYYHQVQ--LTTAVG 477 LA G DV+FDT SG+FTK NAG+S T +DL ASL +N+KG+ L ASYYH V TAVG Sbjct: 139 LAVGTDVSFDTKSGNFTKINAGLSFTKEDLIASLTVNDKGDLLNASYYHIVNPLFNTAVG 198 Query: 476 AEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFSTEVDT 297 AE++H SS ++TITVGTQH LDPLT++K R N+ GIASALIQH W+PKS T S EVDT Sbjct: 199 AEVSHKLSSKDSTITVGTQHSLDPLTSVKARVNSAGIASALIQHEWKPKSFFTISGEVDT 258 Query: 296 KAVEKSPKFGLALSLKP 246 K+++KS K GLAL+LKP Sbjct: 259 KSIDKSAKVGLALALKP 275
>VDAC_MAIZE (P42057) Outer plastidial membrane protein porin (Voltage-dependent| anion-selective channel protein) (VDAC) Length = 277 Score = 173 bits (439), Expect = 3e-43 Identities = 86/136 (63%), Positives = 108/136 (79%), Gaps = 2/136 (1%) Frame = -2 Query: 650 LAFGLDVAFDTASGDFTKYNAGMSHTNQDLTASLMLNNKGNTLAASYYHQVQ--LTTAVG 477 L+ G+DV+FDTA+ DFTKYNA +S T+ DL ASL LNN G+TL ASYYH V+ TAVG Sbjct: 141 LSVGVDVSFDTATSDFTKYNAALSLTSPDLIASLHLNNHGDTLVASYYHLVKNHSGTAVG 200 Query: 476 AEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFSTEVDT 297 AE++HS S NE+T+ G+QH LDP TT+K R+NN+G+ASAL+QH WRPKS +T S +VDT Sbjct: 201 AELSHSMSRNESTLIFGSQHSLDPHTTIKTRFNNYGMASALVQHEWRPKSFVTISGDVDT 260 Query: 296 KAVEKSPKFGLALSLK 249 KA+EKS K GL+L LK Sbjct: 261 KAIEKSTKVGLSLVLK 276
>VDAC2_ARATH (Q9SMX3) Outer mitochondrial membrane protein porin 2| (Voltage-dependent anion-selective channel protein 2) (VDAC 2) Length = 273 Score = 172 bits (437), Expect = 6e-43 Identities = 84/135 (62%), Positives = 105/135 (77%) Frame = -2 Query: 650 LAFGLDVAFDTASGDFTKYNAGMSHTNQDLTASLMLNNKGNTLAASYYHQVQLTTAVGAE 471 L+ G DVA++T SG+F +NAG + T DLTASL+LN+KG L ASYY V +T VGAE Sbjct: 139 LSLGTDVAYNTESGNFKHFNAGFNFTKDDLTASLILNDKGEKLNASYYQIVSPSTVVGAE 198 Query: 470 IAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFSTEVDTKA 291 I+H+F++ EN ITVGTQH LDPLTT+K R NN G+A+ALIQH WRPKS T S EVD+KA Sbjct: 199 ISHNFTTKENAITVGTQHALDPLTTVKARVNNAGVANALIQHEWRPKSFFTVSGEVDSKA 258 Query: 290 VEKSPKFGLALSLKP 246 ++KS K G+AL+LKP Sbjct: 259 IDKSAKVGIALALKP 273
>VDAC_PEA (P42054) Outer plastidial membrane protein porin (Voltage-dependent| anion-selective channel protein) (VDAC) Length = 275 Score = 171 bits (433), Expect = 2e-42 Identities = 85/137 (62%), Positives = 103/137 (75%), Gaps = 2/137 (1%) Frame = -2 Query: 650 LAFGLDVAFDTASGDFTKYNAGMSHTNQDLTASLMLNNKGNTLAASYYHQVQ--LTTAVG 477 LAFG D++FDT G+ TK NA ++ DL SL LN KG+ L+ASYYH + TAVG Sbjct: 139 LAFGADISFDTKLGELTKSNAAVNFVKDDLIGSLTLNEKGDLLSASYYHAINPLSNTAVG 198 Query: 476 AEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFSTEVDT 297 +I+H FS+ ENT T+GTQH LDPLTT+KGR N G ASALIQH WRPKS+IT S+EVDT Sbjct: 199 VDISHRFSTKENTFTLGTQHALDPLTTVKGRVTNSGKASALIQHEWRPKSLITISSEVDT 258 Query: 296 KAVEKSPKFGLALSLKP 246 KA+EKS K GL+L+LKP Sbjct: 259 KAIEKSAKIGLSLALKP 275
>VDAC_SCHPO (Q9P544) Probable outer mitochondrial membrane protein porin| Length = 282 Score = 60.5 bits (145), Expect = 4e-09 Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 3/132 (2%) Frame = -2 Query: 641 GLDVAFDTASGDFTKYNAGMSHTNQDLTASLMLNNKGNTLAASYYHQVQLTTAVGAEIAH 462 G + +D G+ + Y A + + L+ +L +N + ASYYH+V G + Sbjct: 148 GAEFGYDVQKGNVSNYAATIGYLASPLSVALQASNNLSVFRASYYHRVSSDVEAGGNVTW 207 Query: 461 SFSSNENTIT--VGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFSTEVDTKAV 288 +S N IT + +++ LD T +KG+ N+ G+A+ RP + ++DT+ + Sbjct: 208 DAASTANAITLELASKYALDKDTFVKGKINSAGVATLSYFQTVRPGVTVGLGLQLDTQRL 267 Query: 287 -EKSPKFGLALS 255 + + K GL+L+ Sbjct: 268 GQPAHKAGLSLA 279
>VDAC_NEUCR (P07144) Outer mitochondrial membrane protein porin| Length = 283 Score = 50.8 bits (120), Expect = 3e-06 Identities = 27/122 (22%), Positives = 59/122 (48%), Gaps = 1/122 (0%) Frame = -2 Query: 641 GLDVAFDTASGDFTKYNAGMSHTNQDLTASLMLNNKGNTLAASYYHQVQLTTAVGAEIA- 465 G +D T Y+A + + +A++ + + +ASYYH+V G++ Sbjct: 150 GASAGYDVQKAAITGYSAAVGYHAPTYSAAITATDNLSVFSASYYHKVNSQVEAGSKATW 209 Query: 464 HSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFSTEVDTKAVE 285 +S + N + V T++ +DP++ +KG+ N+ G+A+ R + DT+ ++ Sbjct: 210 NSKTGNTVGLEVATKYRIDPVSFVKGKINDRGVAAIAYNVLLREGVTLGVGASFDTQKLD 269 Query: 284 KS 279 ++ Sbjct: 270 QA 271
>VDAC2_RAT (P81155) Voltage-dependent anion-selective channel protein 2| (VDAC-2) (Outer mitochondrial membrane protein porin 2) (B36-VDAC) Length = 295 Score = 48.9 bits (115), Expect = 1e-05 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 1/132 (0%) Frame = -2 Query: 641 GLDVAFDTASGDFTKYNAGMSHTNQDLTASLMLNNKGNTLAASYYHQVQLTTAVGAEIAH 462 G + FD+A T+ N + + D +NN G S Y +V +A Sbjct: 164 GYQMTFDSAKSKLTRSNFAVGYRTGDFQLHTNVNN-GTEFGGSIYQKVCEDFDTSVNLAW 222 Query: 461 SFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFSTEVDTKAVEK 282 + +N + +++LDP ++ + NN + RP +T S VD K+ Sbjct: 223 TSGTNCTRFGIAAKYQLDPTASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSFNA 282 Query: 281 -SPKFGLALSLK 249 K GLAL L+ Sbjct: 283 GGHKLGLALELE 294
>VDAC2_MOUSE (Q60930) Voltage-dependent anion-selective channel protein 2| (VDAC-2) (mVDAC2) (mVDAC6) (Outer mitochondrial membrane protein porin 2) Length = 295 Score = 48.9 bits (115), Expect = 1e-05 Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 1/132 (0%) Frame = -2 Query: 641 GLDVAFDTASGDFTKYNAGMSHTNQDLTASLMLNNKGNTLAASYYHQVQLTTAVGAEIAH 462 G + FD+A T+ N + + D +NN G S Y +V +A Sbjct: 164 GYQMTFDSAKSKLTRSNFAVGYRTGDFQLHTNVNN-GTEFGGSIYQKVCEDFDTSVNLAW 222 Query: 461 SFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFSTEVDTKAVEK 282 + +N + +++LDP ++ + NN + RP +T S VD K+ Sbjct: 223 TSGTNCTRFGIAAKYQLDPTASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSFNA 282 Query: 281 -SPKFGLALSLK 249 K GLAL L+ Sbjct: 283 GGHKLGLALELE 294
>VDAC2_YEAST (P40478) Outer mitochondrial membrane protein porin 2| (Voltage-dependent anion-selective channel protein 2) (VDAC 2) Length = 281 Score = 38.1 bits (87), Expect = 0.023 Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 5/137 (3%) Frame = -2 Query: 641 GLDVAFDTASGDFTKYNAGMSHTNQDLTASLMLNNKGNTLAASYYHQVQLTTAVG--AEI 468 G D+A+DTA+G +Y + + ++ + L NN+ AS++ V VG A + Sbjct: 149 GTDIAYDTAAGLCARYAMSIGYLAREYSFILSTNNR-QCATASFFQNVNRYLQVGTKATL 207 Query: 467 AHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFSTEVDTKAV 288 SSN N I T++ D ++ +K + + G+ + + + I+ + A+ Sbjct: 208 QSKTSSNMN-IEFVTRYVPDSISQVKAKIADSGLTT--LSYKRNLNKDISLGVGMSFNAL 264 Query: 287 ---EKSPKFGLALSLKP 246 E KFG +LS P Sbjct: 265 QLTEPVHKFGWSLSFSP 281
>TO401_ARATH (Q9LHE5) Mitochondrial import receptor subunit TOM40 homolog 1| (Translocase of outer membrane 40 kDa subunit homolog 1) Length = 308 Score = 32.7 bits (73), Expect = 0.96 Identities = 21/88 (23%), Positives = 45/88 (51%) Frame = -2 Query: 515 SYYHQVQLTTAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWR 336 +Y ++ ++ + +++ S + T +VG + L ++G+ ++ G+ASAL++ Sbjct: 223 NYVQKISDKVSLATDFMYNYFSRDVTASVGYDYMLRQ-ARVRGKIDSNGVASALLEERLS 281 Query: 335 PKSVITFSTEVDTKAVEKSPKFGLALSL 252 S E+D K +K KFG L++ Sbjct: 282 MGLNFLLSAELDHK--KKDYKFGFGLTV 307
>PER1_MOUSE (O35973) Period circadian protein 1 (Circadian pacemaker protein| Rigui) (mPER) (M-Rigui) Length = 1291 Score = 32.0 bits (71), Expect = 1.6 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%) Frame = -1 Query: 525 PGCFL--LPPGAAHHCCGSRDRSQLLEQREHHHR 430 PGC +PPG HHC RS+ R HHH+ Sbjct: 817 PGCHHGPIPPGRRHHC-----RSKAKRSRHHHHQ 845
>VIRB9_AGRTU (P0A3W6) Protein virB9 precursor| Length = 293 Score = 31.6 bits (70), Expect = 2.1 Identities = 20/63 (31%), Positives = 32/63 (50%) Frame = -2 Query: 500 VQLTTAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVI 321 V+L+TAVGA + +F++NE +V + D +G Y F + L +P V+ Sbjct: 45 VRLSTAVGATLVVTFATNETVTSVAVSNSKDLAALPRGNYLFFKASQVLTP---QPVIVL 101 Query: 320 TFS 312 T S Sbjct: 102 TAS 104
>VIRB9_AGRT9 (P0A3W7) Protein virB9 precursor| Length = 293 Score = 31.6 bits (70), Expect = 2.1 Identities = 20/63 (31%), Positives = 32/63 (50%) Frame = -2 Query: 500 VQLTTAVGAEIAHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVI 321 V+L+TAVGA + +F++NE +V + D +G Y F + L +P V+ Sbjct: 45 VRLSTAVGATLVVTFATNETVTSVAVSNSKDLAALPRGNYLFFKASQVLTP---QPVIVL 101 Query: 320 TFS 312 T S Sbjct: 102 TAS 104
>TOM40_XENTR (Q6P825) Probable mitochondrial import receptor subunit TOM40| homolog (Translocase of outer membrane 40 kDa subunit homolog) Length = 336 Score = 31.2 bits (69), Expect = 2.8 Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 2/108 (1%) Frame = -2 Query: 650 LAFGLDVAFDTASGDF-TKYNAGMSHTNQDLTASLMLNNKGNTLAASYYHQVQLTTAVGA 474 LA G ++ + G+ T + +T + TA+L L G A+YYH+ VG Sbjct: 204 LALGGELVYHRRPGEEGTVMSLAGRYTAPNWTATLTLGQAG--AHATYYHKANDQLQVGV 261 Query: 473 EIAHSFSSNENTITVGTQHELDPLTTL-KGRYNNFGIASALIQHAWRP 333 E S + +++ G Q +L L KG ++ I A ++ P Sbjct: 262 EFEASTRMQDTSVSFGYQLDLPKANLLFKGSVDSNWIVGATLEKKLPP 309
>ANR21_HUMAN (Q86YR6) Ankyrin repeat domain-containing protein 21 (Protein POTE)| (Prostate, ovary, testis expressed protein) Length = 584 Score = 30.8 bits (68), Expect = 3.6 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = +2 Query: 527 CFPCCSASTKQ*DLG*YGSFQHCTW*SPQRQYQMQHQD 640 CFPCC S+K ++G +G + H + P +Y ++ +D Sbjct: 105 CFPCCRGSSKS-NVGAWGDYDHSAFMEP--RYHVRRED 139
>VIRB9_AGRT5 (P17799) Protein virB9 precursor| Length = 293 Score = 30.8 bits (68), Expect = 3.6 Identities = 20/72 (27%), Positives = 33/72 (45%) Frame = -2 Query: 569 QDLTASLMLNNKGNTLAASYYHQVQLTTAVGAEIAHSFSSNENTITVGTQHELDPLTTLK 390 +D + L+ + LA + V+L+TAVGA + +F +NE V + D + Sbjct: 22 EDTPTAGRLDPRMRYLAYNPDQVVRLSTAVGATLVVTFGANETVTAVAVSNSKDLAALPR 81 Query: 389 GRYNNFGIASAL 354 G Y F + L Sbjct: 82 GNYLFFKASKVL 93
>TOM40_XENLA (Q7ZTM6) Probable mitochondrial import receptor subunit TOM40| homolog (Translocase of outer membrane 40 kDa subunit homolog) Length = 336 Score = 30.4 bits (67), Expect = 4.8 Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 2/108 (1%) Frame = -2 Query: 650 LAFGLDVAFDTASGDF-TKYNAGMSHTNQDLTASLMLNNKGNTLAASYYHQVQLTTAVGA 474 LA G ++ + G+ T + +T TA+L L G A+YYH+ +G Sbjct: 204 LALGGELVYHRRPGEEGTVMSLAGRYTAPSWTATLTLGQAG--AHATYYHKANDQLQLGV 261 Query: 473 EIAHSFSSNENTITVGTQHELDPLTTL-KGRYNNFGIASALIQHAWRP 333 E S + ++++G Q +L L KG ++ I A ++ P Sbjct: 262 EFEASARMQDTSVSLGYQLDLPKANLLFKGSIDSNWIVGATLEKKLPP 309
>FUR_HAEDU (P71333) Ferric uptake regulation protein (Ferric uptake regulator)| Length = 149 Score = 30.4 bits (67), Expect = 4.8 Identities = 16/64 (25%), Positives = 27/64 (42%) Frame = -2 Query: 599 KYNAGMSHTNQDLTASLMLNNKGNTLAASYYHQVQLTTAVGAEIAHSFSSNENTITVGTQ 420 +Y M H + + L+L + A+ Y + VG + H+F SN+ + Sbjct: 29 QYREEMQHFSAEDIYKLLLEQSSDIGLATVYRVLNQFEEVGILLRHNFDSNKAVFELNVD 88 Query: 419 HELD 408 HE D Sbjct: 89 HEHD 92
>Y2756_YERPE (Q8ZD36) UPF0209 protein YPO2756/y1590/YP2407| Length = 689 Score = 30.4 bits (67), Expect = 4.8 Identities = 27/111 (24%), Positives = 47/111 (42%), Gaps = 13/111 (11%) Frame = -2 Query: 641 GLDVAFDTASGDFTKYNAGMSHTNQDLTASLMLNNKGNTLAASYYHQVQLTTAVGAEIAH 462 GLD A D Y AG DLT +LM+ + N + Y H++Q + ++ Sbjct: 393 GLDCAHDGIH-----YPAGGWLCPSDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQWQL 447 Query: 461 SFSSNE-----NTITVGTQHELD--------PLTTLKGRYNNFGIASALIQ 348 +F ++ T+ + T H L PL+ ++G+ ++ L Q Sbjct: 448 TFGQSQAAKHHATVILATGHRLPEWEQTHHLPLSAVRGQVSHIPTTPVLSQ 498 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,114,145 Number of Sequences: 219361 Number of extensions: 1952485 Number of successful extensions: 4809 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 4616 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4796 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6143359464 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
