| Clone Name | rbags12e24 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009621.1| Triticum aestivum clone wre1n.pk0134.h7:fis, full insert mRNA sequence Length = 1608 Score = 722 bits (364), Expect = 0.0 Identities = 437/463 (94%), Gaps = 10/463 (2%) Strand = Plus / Minus Query: 186 cagtctgcaatcagtactgatagtacctgg----------gtgaactcgaaaatgctaaa 235 |||||||||||| ||||||||||||||||| |||||||| ||||||| ||| Sbjct: 1383 cagtctgcaatccgtactgatagtacctggctactagcaagtgaactcaaaaatgcaaaa 1324 Query: 236 atacacgaccctgtgatgaattcatcacttctttccacctccagaaacattgaacttgaa 295 |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| Sbjct: 1323 atacacgaccctgtgatgaatttatcacttctttccgcctccagaaacattgaacttgaa 1264 Query: 296 gaagatgatgtctccatcctgcaccacgtatgttttcccttcctgcctgtacttcccagc 355 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct: 1263 gaagatgatgtctccatcctgcaccacgtacgtcttcccttcctgcctgtacttcccagc 1204 Query: 356 agcctttacagcagattcactgcccagctcttttagatcttcaaacttcattacctcggc 415 |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1203 agccttcacagcagattcactgcccagctcttttagatcttcaaacttcattacctcagc 1144 Query: 416 acatatgaagcctctttcaaaatcagtgtgaattgcaccagcagcttgcggagctttact 475 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 1143 acatatgaagcctctttcaaaatcagtatgaattgcaccagcagcttgcggagctttact 1084 Query: 476 ttgacgtctgatctgccagcacttcacctcgccgtgaccagcagtgaagaagtatatgag 535 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1083 ttgacgtctgatctgccagcacttcacctcgccgtgaccagcagtgaagaagtatatgag 1024 Query: 536 atgaattgctgcaaaaccagtcttgatgattttggggatcaaacttatcgtctggttttc 595 |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| Sbjct: 1023 atgaattgctgcaaaaccagtcttgatgattttggggatcaaacttgtcgtttggttttc 964 Query: 596 ggcacaatatttggcagcttcatctcctggcatatccactagt 638 || |||||||| |||||||||||| ||||||||||||||||| Sbjct: 963 ggtgcaatatttagcagcttcatcttctggcatatccactagt 921 Score = 97.6 bits (49), Expect = 4e-17 Identities = 109/130 (83%), Gaps = 11/130 (8%) Strand = Plus / Minus Query: 20 aagttacaacttccagntttccgatagaggcctcaaacatcgttcaggtgtacacttggc 79 |||||||||||||||| |||| ||||||||||||||||||||||||| |||| ||||| Sbjct: 1512 aagttacaacttccagttttctaatagaggcctcaaacatcgttcaggcgtacggttggc 1453 Query: 80 agttggcacacatgacttnataacatngaggagtactttcaaaagcagtagtgaacgaaa 139 |||||||||| |||||| |||||||| |||||||||||| || ||| |||| Sbjct: 1452 agttggcaca----------taacatcgaggagtaatttcaaaagcag-agcgaatgaaa 1404 Query: 140 atttatatat 149 |||||||||| Sbjct: 1403 atttatatat 1394
>gb|AY135021.1| Triticum aestivum GTP-binding protein mRNA, complete cds Length = 1143 Score = 714 bits (360), Expect = 0.0 Identities = 463/497 (93%), Gaps = 13/497 (2%) Strand = Plus / Minus Query: 153 tcccttccagttggtgcttataccctncccgcacagtctgcaatcagtactgatagtacc 212 |||||||||||||||||||||| || |||||| ||||||||||||||||||||||||| Sbjct: 1001 tcccttccagttggtgcttatagtctccccgca--gtctgcaatcagtactgatagtacc 944 Query: 213 tgg----------gtgaactcgaaaatgctaaaatacacgaccctgtgatgaattcatca 262 ||| |||||| | |||||||||||||||||||||||||||||||||||||| Sbjct: 943 tggctacttgcaagtgaacccaaaaatgctaaaatacacgaccctgtgatgaattcatca 884 Query: 263 cttctttccacctccagaaacattgaacttgaagaagatgatgtctccatcctgcaccac 322 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 883 cttctttccgcctccagaaacattgaacttgaagaagatgatgtctccatcctgcaccac 824 Query: 323 gtatgttttcccttcctg-cctgtacttcccagcagcctttacagcagattcactgccca 381 ||| || ||||||||||| ||||||||||||||||||||| ||||||||||| ||||||| Sbjct: 823 gtacgtcttcccttcctggcctgtacttcccagcagccttgacagcagattcgctgccca 764 Query: 382 gctcttttagatcttcaaacttcattacctcggcacatatgaagcctctttcaaaatcag 441 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 763 gctcttttagatcttcaaacttcattacctcagcacatatgaagcctctttcaaaatcag 704 Query: 442 tgtgaattgcaccagcagcttgcggagctttactttgacgtctgatctgccagcacttca 501 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 703 tgtgaattgcaccagcagcttgcggagctttagattgacgtctgatctgccagcacttca 644 Query: 502 cctcgccgtgaccagcagtgaagaagtatatgagatgaattgctgcaaaaccagtcttga 561 ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 643 cctcgtcgtgaccagctgtgaagaagtatatgagatgaattgctgcaaaaccagtcttga 584 Query: 562 tgattttggggatcaaacttatcgtctggttttcggcacaatatttggcagcttcatctc 621 |||||||||||||||||||| |||||||||||||| |||||||| |||||||||||| Sbjct: 583 tgattttggggatcaaacttgctgtctggttttcggcgcaatatttagcagcttcatctt 524 Query: 622 ctggcatatccactagt 638 ||||||||||||||||| Sbjct: 523 ctggcatatccactagt 507 Score = 48.1 bits (24), Expect = 0.036 Identities = 26/27 (96%) Strand = Plus / Minus Query: 22 gttacaacttccagntttccgatagag 48 |||||||||||||| |||||||||||| Sbjct: 1069 gttacaacttccagttttccgatagag 1043
>gb|AY105761.1| Zea mays PCO136937 mRNA sequence Length = 1586 Score = 394 bits (199), Expect = e-106 Identities = 334/379 (88%) Strand = Plus / Minus Query: 260 tcacttctttccacctccagaaacattgaacttgaagaagatgatgtctccatcctgcac 319 ||||||||| || || ||||| || ||||| ||||| ||||||||||| || ||||| || Sbjct: 1325 tcacttcttcccgccaccagacacgttgaatttgaaaaagatgatgtccccgtcctggac 1266 Query: 320 cacgtatgttttcccttcctgcctgtacttcccagcagcctttacagcagattcactgcc 379 ||| || |||||||| |||||| |||| || ||||||||||||||||||||||||||||| Sbjct: 1265 cacataggttttcccctcctgcttgtattttccagcagcctttacagcagattcactgcc 1206 Query: 380 cagctcttttagatcttcaaacttcattacctcggcacatatgaagcctctttcaaaatc 439 ||| ||||| ||||||||||||||||||||||| || |||||||| || ||||||||||| Sbjct: 1205 cagttctttcagatcttcaaacttcattacctcagcgcatatgaaacccctttcaaaatc 1146 Query: 440 agtgtgaattgcaccagcagcttgcggagctttactttgacgtctgatctgccagcactt 499 |||||||||||||||||||||||| ||||||||| | || |||||||||||||| || || Sbjct: 1145 agtgtgaattgcaccagcagcttgaggagctttagtctggcgtctgatctgccaacattt 1086 Query: 500 cacctcgccgtgaccagcagtgaagaagtatatgagatgaattgctgcaaaaccagtctt 559 ||||| | ||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct: 1085 tacctcatcaggaccagcagtgaaaaagtatatcagatgaattgctgcaaaaccagtctt 1026 Query: 560 gatgattttggggatcaaacttatcgtctggttttcggcacaatatttggcagcttcatc 619 ||| ||||| ||||||| ||| | |||||||||| |||||||||||||| |||||||| Sbjct: 1025 gataatttttgggatcatgcttgttatctggttttcagcacaatatttggcggcttcatc 966 Query: 620 tcctggcatatccactagt 638 | ||||||||||||||||| Sbjct: 965 ttctggcatatccactagt 947
>ref|XM_480550.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1533 Score = 373 bits (188), Expect = e-100 Identities = 317/360 (88%) Strand = Plus / Minus Query: 260 tcacttctttccacctccagaaacattgaacttgaagaagatgatgtctccatcctgcac 319 ||||||||||||||||||||| || || || || ||||||||||| || || ||||| || Sbjct: 1274 tcacttctttccacctccagacacgttaaatttaaagaagatgatatccccgtcctgtac 1215 Query: 320 cacgtatgttttcccttcctgcctgtacttcccagcagcctttacagcagattcactgcc 379 |||||| || ||||||||||||||||| || ||||||||||| |||||||||||||| || Sbjct: 1214 cacgtaggtcttcccttcctgcctgtattttccagcagccttcacagcagattcactacc 1155 Query: 380 cagctcttttagatcttcaaacttcattacctcggcacatatgaagcctctttcaaaatc 439 ||| ||||||||||| || |||||||||||||| || |||||||||||||| |||||||| Sbjct: 1154 cagttcttttagatcgtcgaacttcattacctcagcgcatatgaagcctctctcaaaatc 1095 Query: 440 agtgtgaattgcaccagcagcttgcggagctttactttgacgtctgatctgccagcactt 499 ||||||||||| |||||||||||| || |||||| ||||||||||||||||||| ||||| Sbjct: 1094 agtgtgaattgtaccagcagcttgaggtgctttagtttgacgtctgatctgccaacactt 1035 Query: 500 cacctcgccgtgaccagcagtgaagaagtatatgagatgaattgctgcaaaaccagtctt 559 |||||| | | ||||||||||| |||||||| ||||| |||||||||||||||||||| Sbjct: 1034 tacctcgtcagggccagcagtgaaaaagtatataagatggattgctgcaaaaccagtctt 975 Query: 560 gatgattttggggatcaaacttatcgtctggttttcggcacaatatttggcagcttcatc 619 ||| ||||| ||||||| |||| |||||||||| ||||||||||| ||||||||||| Sbjct: 974 gataatttttgggatcacacttgcaatctggttttcagcacaatatttagcagcttcatc 915
>ref|XM_507572.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0094P23.28 mRNA Length = 1594 Score = 373 bits (188), Expect = e-100 Identities = 317/360 (88%) Strand = Plus / Minus Query: 260 tcacttctttccacctccagaaacattgaacttgaagaagatgatgtctccatcctgcac 319 ||||||||||||||||||||| || || || || ||||||||||| || || ||||| || Sbjct: 1291 tcacttctttccacctccagacacgttaaatttaaagaagatgatatccccgtcctgtac 1232 Query: 320 cacgtatgttttcccttcctgcctgtacttcccagcagcctttacagcagattcactgcc 379 |||||| || ||||||||||||||||| || ||||||||||| |||||||||||||| || Sbjct: 1231 cacgtaggtcttcccttcctgcctgtattttccagcagccttcacagcagattcactacc 1172 Query: 380 cagctcttttagatcttcaaacttcattacctcggcacatatgaagcctctttcaaaatc 439 ||| ||||||||||| || |||||||||||||| || |||||||||||||| |||||||| Sbjct: 1171 cagttcttttagatcgtcgaacttcattacctcagcgcatatgaagcctctctcaaaatc 1112 Query: 440 agtgtgaattgcaccagcagcttgcggagctttactttgacgtctgatctgccagcactt 499 ||||||||||| |||||||||||| || |||||| ||||||||||||||||||| ||||| Sbjct: 1111 agtgtgaattgtaccagcagcttgaggtgctttagtttgacgtctgatctgccaacactt 1052 Query: 500 cacctcgccgtgaccagcagtgaagaagtatatgagatgaattgctgcaaaaccagtctt 559 |||||| | | ||||||||||| |||||||| ||||| |||||||||||||||||||| Sbjct: 1051 tacctcgtcagggccagcagtgaaaaagtatataagatggattgctgcaaaaccagtctt 992 Query: 560 gatgattttggggatcaaacttatcgtctggttttcggcacaatatttggcagcttcatc 619 ||| ||||| ||||||| |||| |||||||||| ||||||||||| ||||||||||| Sbjct: 991 gataatttttgggatcacacttgcaatctggttttcagcacaatatttagcagcttcatc 932
>ref|XM_507162.2| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0094P23.28 mRNA Length = 1551 Score = 373 bits (188), Expect = e-100 Identities = 317/360 (88%) Strand = Plus / Minus Query: 260 tcacttctttccacctccagaaacattgaacttgaagaagatgatgtctccatcctgcac 319 ||||||||||||||||||||| || || || || ||||||||||| || || ||||| || Sbjct: 1292 tcacttctttccacctccagacacgttaaatttaaagaagatgatatccccgtcctgtac 1233 Query: 320 cacgtatgttttcccttcctgcctgtacttcccagcagcctttacagcagattcactgcc 379 |||||| || ||||||||||||||||| || ||||||||||| |||||||||||||| || Sbjct: 1232 cacgtaggtcttcccttcctgcctgtattttccagcagccttcacagcagattcactacc 1173 Query: 380 cagctcttttagatcttcaaacttcattacctcggcacatatgaagcctctttcaaaatc 439 ||| ||||||||||| || |||||||||||||| || |||||||||||||| |||||||| Sbjct: 1172 cagttcttttagatcgtcgaacttcattacctcagcgcatatgaagcctctctcaaaatc 1113 Query: 440 agtgtgaattgcaccagcagcttgcggagctttactttgacgtctgatctgccagcactt 499 ||||||||||| |||||||||||| || |||||| ||||||||||||||||||| ||||| Sbjct: 1112 agtgtgaattgtaccagcagcttgaggtgctttagtttgacgtctgatctgccaacactt 1053 Query: 500 cacctcgccgtgaccagcagtgaagaagtatatgagatgaattgctgcaaaaccagtctt 559 |||||| | | ||||||||||| |||||||| ||||| |||||||||||||||||||| Sbjct: 1052 tacctcgtcagggccagcagtgaaaaagtatataagatggattgctgcaaaaccagtctt 993 Query: 560 gatgattttggggatcaaacttatcgtctggttttcggcacaatatttggcagcttcatc 619 ||| ||||| ||||||| |||| |||||||||| ||||||||||| ||||||||||| Sbjct: 992 gataatttttgggatcacacttgcaatctggttttcagcacaatatttagcagcttcatc 933
>dbj|AK121741.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033085L09, full insert sequence Length = 1551 Score = 373 bits (188), Expect = e-100 Identities = 317/360 (88%) Strand = Plus / Minus Query: 260 tcacttctttccacctccagaaacattgaacttgaagaagatgatgtctccatcctgcac 319 ||||||||||||||||||||| || || || || ||||||||||| || || ||||| || Sbjct: 1292 tcacttctttccacctccagacacgttaaatttaaagaagatgatatccccgtcctgtac 1233 Query: 320 cacgtatgttttcccttcctgcctgtacttcccagcagcctttacagcagattcactgcc 379 |||||| || ||||||||||||||||| || ||||||||||| |||||||||||||| || Sbjct: 1232 cacgtaggtcttcccttcctgcctgtattttccagcagccttcacagcagattcactacc 1173 Query: 380 cagctcttttagatcttcaaacttcattacctcggcacatatgaagcctctttcaaaatc 439 ||| ||||||||||| || |||||||||||||| || |||||||||||||| |||||||| Sbjct: 1172 cagttcttttagatcgtcgaacttcattacctcagcgcatatgaagcctctatcaaaatc 1113 Query: 440 agtgtgaattgcaccagcagcttgcggagctttactttgacgtctgatctgccagcactt 499 ||||||||||| |||||||||||| || |||||| ||||||||||||||||||| ||||| Sbjct: 1112 agtgtgaattgtaccagcagcttgaggtgctttagtttgacgtctgatctgccaacactt 1053 Query: 500 cacctcgccgtgaccagcagtgaagaagtatatgagatgaattgctgcaaaaccagtctt 559 |||||| | | ||||||||||| |||||||| ||||| |||||||||||||||||||| Sbjct: 1052 tacctcgtcagggccagcagtgaaaaagtatataagatggattgctgcaaaaccagtctt 993 Query: 560 gatgattttggggatcaaacttatcgtctggttttcggcacaatatttggcagcttcatc 619 ||| ||||| ||||||| |||| |||||||||| ||||||||||| ||||||||||| Sbjct: 992 gataatttttgggatcacacttgcaatctggttttcagcacaatatttagcagcttcatc 933
>dbj|AK098917.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002L20, full insert sequence Length = 1533 Score = 373 bits (188), Expect = e-100 Identities = 317/360 (88%) Strand = Plus / Minus Query: 260 tcacttctttccacctccagaaacattgaacttgaagaagatgatgtctccatcctgcac 319 ||||||||||||||||||||| || || || || ||||||||||| || || ||||| || Sbjct: 1274 tcacttctttccacctccagacacgttaaatttaaagaagatgatatccccgtcctgtac 1215 Query: 320 cacgtatgttttcccttcctgcctgtacttcccagcagcctttacagcagattcactgcc 379 |||||| || ||||||||||||||||| || ||||||||||| |||||||||||||| || Sbjct: 1214 cacgtaggtcttcccttcctgcctgtattttccagcagccttcacagcagattcactacc 1155 Query: 380 cagctcttttagatcttcaaacttcattacctcggcacatatgaagcctctttcaaaatc 439 ||| ||||||||||| || |||||||||||||| || |||||||||||||| |||||||| Sbjct: 1154 cagttcttttagatcgtcgaacttcattacctcagcgcatatgaagcctctctcaaaatc 1095 Query: 440 agtgtgaattgcaccagcagcttgcggagctttactttgacgtctgatctgccagcactt 499 ||||||||||| |||||||||||| || |||||| ||||||||||||||||||| ||||| Sbjct: 1094 agtgtgaattgtaccagcagcttgaggtgctttagtttgacgtctgatctgccaacactt 1035 Query: 500 cacctcgccgtgaccagcagtgaagaagtatatgagatgaattgctgcaaaaccagtctt 559 |||||| | | ||||||||||| |||||||| ||||| |||||||||||||||||||| Sbjct: 1034 tacctcgtcagggccagcagtgaaaaagtatataagatggattgctgcaaaaccagtctt 975 Query: 560 gatgattttggggatcaaacttatcgtctggttttcggcacaatatttggcagcttcatc 619 ||| ||||| ||||||| |||| |||||||||| ||||||||||| ||||||||||| Sbjct: 974 gataatttttgggatcacacttgcaatctggttttcagcacaatatttagcagcttcatc 915
>dbj|AK062256.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-G08, full insert sequence Length = 1599 Score = 373 bits (188), Expect = e-100 Identities = 317/360 (88%) Strand = Plus / Minus Query: 260 tcacttctttccacctccagaaacattgaacttgaagaagatgatgtctccatcctgcac 319 ||||||||||||||||||||| || || || || ||||||||||| || || ||||| || Sbjct: 1296 tcacttctttccacctccagacacgttaaatttaaagaagatgatatccccgtcctgtac 1237 Query: 320 cacgtatgttttcccttcctgcctgtacttcccagcagcctttacagcagattcactgcc 379 |||||| || ||||||||||||||||| || ||||||||||| |||||||||||||| || Sbjct: 1236 cacgtaggtcttcccttcctgcctgtattttccagcagccttcacagcagattcactacc 1177 Query: 380 cagctcttttagatcttcaaacttcattacctcggcacatatgaagcctctttcaaaatc 439 ||| ||||||||||| || |||||||||||||| || |||||||||||||| |||||||| Sbjct: 1176 cagttcttttagatcgtcgaacttcattacctcagcgcatatgaagcctctctcaaaatc 1117 Query: 440 agtgtgaattgcaccagcagcttgcggagctttactttgacgtctgatctgccagcactt 499 ||||||||||| |||||||||||| || |||||| ||||||||||||||||||| ||||| Sbjct: 1116 agtgtgaattgtaccagcagcttgaggtgctttagtttgacgtctgatctgccaacactt 1057 Query: 500 cacctcgccgtgaccagcagtgaagaagtatatgagatgaattgctgcaaaaccagtctt 559 |||||| | | ||||||||||| |||||||| ||||| |||||||||||||||||||| Sbjct: 1056 tacctcgtcagggccagcagtgaaaaagtatataagatggattgctgcaaaaccagtctt 997 Query: 560 gatgattttggggatcaaacttatcgtctggttttcggcacaatatttggcagcttcatc 619 ||| ||||| ||||||| |||| |||||||||| ||||||||||| ||||||||||| Sbjct: 996 gataatttttgggatcacacttgcaatctggttttcagcacaatatttagcagcttcatc 937
>ref|NM_102795.2| Arabidopsis thaliana GTP binding AT1G30580 mRNA, complete cds Length = 1549 Score = 139 bits (70), Expect = 1e-29 Identities = 244/302 (80%) Strand = Plus / Minus Query: 264 ttctttccacctccagaaacattgaacttgaagaagatgatgtctccatcctgcaccacg 323 ||||| ||||| || |||||||||||||||||||| ||||| ||||||||||| || || Sbjct: 1265 ttcttcccaccaccggaaacattgaacttgaagaaaatgatatctccatcctgaacaaca 1206 Query: 324 tatgttttcccttcctgcctgtacttcccagcagcctttacagcagattcactgcccagc 383 |||||||| || ||||| ||||| || || || ||||| || |||| |||| |||| || Sbjct: 1205 tatgttttaccctcctgtctgtattttcctgcggccttgactgcaggttcattgccaagt 1146 Query: 384 tcttttagatcttcaaacttcattacctcggcacatatgaagcctctttcaaaatcagtg 443 || || ||||| || || ||||| ||||| ||||| || || ||||| ||||||||||| Sbjct: 1145 tccttgagatcctcgaatttcatgacctcagcacaaataaatcctctctcaaaatcagta 1086 Query: 444 tgaattgcaccagcagcttgcggagctttactttgacgtctgatctgccagcacttcacc 503 ||||| || || |||||||| ||||| || || ||||| || ||||||||||||||| Sbjct: 1085 tgaatggcccctgcagcttgaggagcctttgactgccgtcttatttgccagcacttcacc 1026 Query: 504 tcgccgtgaccagcagtgaagaagtatatgagatgaattgctgcaaaaccagtcttgatg 563 || | | || || || |||||||||||||| | |||||||| ||| ||||| |||||| Sbjct: 1025 tcatcaggccctgctgtaaagaagtatatgaggttaattgctgaaaatccagttttgatg 966 Query: 564 at 565 || Sbjct: 965 at 964
>gb|AF108896.1|AF108896 Capsicum annuum GTP-binding protein mRNA, complete cds Length = 1557 Score = 139 bits (70), Expect = 1e-29 Identities = 175/210 (83%) Strand = Plus / Minus Query: 260 tcacttctttccacctccagaaacattgaacttgaagaagatgatgtctccatcctgcac 319 ||||||||| ||||| ||||| ||||||||||||||||| || || || ||||| || || Sbjct: 1200 tcacttcttgccacccccagacacattgaacttgaagaatataatatcaccatcttggac 1141 Query: 320 cacgtatgttttcccttcctgcctgtacttcccagcagcctttacagcagattcactgcc 379 ||| || || || ||||||||| | ||||||||||| ||||||||||| | ||||| || Sbjct: 1140 cacataggtcttaccttcctgcttatacttcccagcggcctttacagctgcctcactacc 1081 Query: 380 cagctcttttagatcttcaaacttcattacctcggcacatatgaagcctctttcaaaatc 439 || || |||||||| ||||| ||||| ||||| ||||| ||||| ||||| |||||||| Sbjct: 1080 aagttcctttagatcatcaaatttcatcacctcagcacagatgaaccctctctcaaaatc 1021 Query: 440 agtgtgaattgcaccagcagcttgcggagc 469 || ||||||| ||||||||||| ||||| Sbjct: 1020 tgtatgaattgttccagcagcttgaggagc 991
>gb|AY085845.1| Arabidopsis thaliana clone 18981 mRNA, complete sequence Length = 1497 Score = 131 bits (66), Expect = 3e-27 Identities = 243/302 (80%) Strand = Plus / Minus Query: 264 ttctttccacctccagaaacattgaacttgaagaagatgatgtctccatcctgcaccacg 323 ||||| ||||| || |||||||||||||||||||| ||||| ||||||||||| || | Sbjct: 1266 ttcttcccaccaccggaaacattgaacttgaagaaaatgatatctccatcctgaacaaaa 1207 Query: 324 tatgttttcccttcctgcctgtacttcccagcagcctttacagcagattcactgcccagc 383 |||||||| || ||||| ||||| || || || ||||| || |||| |||| |||| || Sbjct: 1206 tatgttttaccctcctgtctgtattttcctgcggccttgactgcaggttcattgccaagt 1147 Query: 384 tcttttagatcttcaaacttcattacctcggcacatatgaagcctctttcaaaatcagtg 443 || || ||||| || || ||||| ||||| ||||| || || ||||| ||||||||||| Sbjct: 1146 tccttgagatcctcgaatttcatgacctcagcacaaataaatcctctctcaaaatcagta 1087 Query: 444 tgaattgcaccagcagcttgcggagctttactttgacgtctgatctgccagcacttcacc 503 ||||| || || |||||||| ||||| || || ||||| || ||||||||||||||| Sbjct: 1086 tgaatggcccctgcagcttgaggagcctttgactgccgtcttatttgccagcacttcacc 1027 Query: 504 tcgccgtgaccagcagtgaagaagtatatgagatgaattgctgcaaaaccagtcttgatg 563 || | | || || || |||||||||||||| | |||||||| ||| ||||| |||||| Sbjct: 1026 tcatcaggccctgctgtaaagaagtatatgaggttaattgctgaaaatccagttttgatg 967 Query: 564 at 565 || Sbjct: 966 at 965
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 123 bits (62), Expect = 8e-25 Identities = 89/98 (90%) Strand = Plus / Minus Query: 407 tacctcggcacatatgaagcctctttcaaaatcagtgtgaattgcaccagcagcttgcgg 466 |||||| || |||||||||||||| ||||||||||||||||||| |||||||||||| || Sbjct: 5744597 tacctcagcgcatatgaagcctctctcaaaatcagtgtgaattgtaccagcagcttgagg 5744538 Query: 467 agctttactttgacgtctgatctgccagcacttcacct 504 |||||| ||||||||||||||||||| ||||| |||| Sbjct: 5744537 tgctttagtttgacgtctgatctgccaacactttacct 5744500 Score = 97.6 bits (49), Expect = 4e-17 Identities = 88/101 (87%) Strand = Plus / Minus Query: 260 tcacttctttccacctccagaaacattgaacttgaagaagatgatgtctccatcctgcac 319 ||||||||||||||||||||| || || || || ||||||||||| || || ||||| || Sbjct: 5745182 tcacttctttccacctccagacacgttaaatttaaagaagatgatatccccgtcctgtac 5745123 Query: 320 cacgtatgttttcccttcctgcctgtacttcccagcagcct 360 |||||| || ||||||||||||||||| || |||||||||| Sbjct: 5745122 cacgtaggtcttcccttcctgcctgtattttccagcagcct 5745082 Score = 87.7 bits (44), Expect = 4e-14 Identities = 59/64 (92%) Strand = Plus / Minus Query: 513 ccagcagtgaagaagtatatgagatgaattgctgcaaaaccagtcttgatgattttgggg 572 ||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||| ||| Sbjct: 5743935 ccagcagtgaaaaagtatataagatggattgctgcaaaaccagtcttgataatttttggg 5743876 Query: 573 atca 576 |||| Sbjct: 5743875 atca 5743872 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 358 cctttacagcagattcactgcccagctcttttagatcttcaaacttcattacct 411 |||| |||||||||||||| ||||| ||||||||||| || ||||||||||||| Sbjct: 5744995 ccttcacagcagattcactacccagttcttttagatcgtcgaacttcattacct 5744942 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 586 tctggttttcggcacaatatttggcagcttcatc 619 |||||||||| ||||||||||| ||||||||||| Sbjct: 5743451 tctggttttcagcacaatatttagcagcttcatc 5743418
>dbj|AP005416.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0094P23 Length = 149341 Score = 123 bits (62), Expect = 8e-25 Identities = 89/98 (90%) Strand = Plus / Minus Query: 407 tacctcggcacatatgaagcctctttcaaaatcagtgtgaattgcaccagcagcttgcgg 466 |||||| || |||||||||||||| ||||||||||||||||||| |||||||||||| || Sbjct: 99222 tacctcagcgcatatgaagcctctctcaaaatcagtgtgaattgtaccagcagcttgagg 99163 Query: 467 agctttactttgacgtctgatctgccagcacttcacct 504 |||||| ||||||||||||||||||| ||||| |||| Sbjct: 99162 tgctttagtttgacgtctgatctgccaacactttacct 99125 Score = 97.6 bits (49), Expect = 4e-17 Identities = 88/101 (87%) Strand = Plus / Minus Query: 260 tcacttctttccacctccagaaacattgaacttgaagaagatgatgtctccatcctgcac 319 ||||||||||||||||||||| || || || || ||||||||||| || || ||||| || Sbjct: 99807 tcacttctttccacctccagacacgttaaatttaaagaagatgatatccccgtcctgtac 99748 Query: 320 cacgtatgttttcccttcctgcctgtacttcccagcagcct 360 |||||| || ||||||||||||||||| || |||||||||| Sbjct: 99747 cacgtaggtcttcccttcctgcctgtattttccagcagcct 99707 Score = 87.7 bits (44), Expect = 4e-14 Identities = 59/64 (92%) Strand = Plus / Minus Query: 513 ccagcagtgaagaagtatatgagatgaattgctgcaaaaccagtcttgatgattttgggg 572 ||||||||||| |||||||| ||||| ||||||||||||||||||||||| ||||| ||| Sbjct: 98560 ccagcagtgaaaaagtatataagatggattgctgcaaaaccagtcttgataatttttggg 98501 Query: 573 atca 576 |||| Sbjct: 98500 atca 98497 Score = 67.9 bits (34), Expect = 4e-08 Identities = 49/54 (90%) Strand = Plus / Minus Query: 358 cctttacagcagattcactgcccagctcttttagatcttcaaacttcattacct 411 |||| |||||||||||||| ||||| ||||||||||| || ||||||||||||| Sbjct: 99620 ccttcacagcagattcactacccagttcttttagatcgtcgaacttcattacct 99567 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 586 tctggttttcggcacaatatttggcagcttcatc 619 |||||||||| ||||||||||| ||||||||||| Sbjct: 98076 tctggttttcagcacaatatttagcagcttcatc 98043
>gb|AC007060.3|T5I8 Arabidopsis thaliana chromosome 1 BAC T5I8 sequence, complete sequence Length = 96183 Score = 77.8 bits (39), Expect = 4e-11 Identities = 72/83 (86%) Strand = Plus / Plus Query: 264 ttctttccacctccagaaacattgaacttgaagaagatgatgtctccatcctgcaccacg 323 ||||| ||||| || |||||||||||||||||||| ||||| ||||||||||| || || Sbjct: 7208 ttcttcccaccaccggaaacattgaacttgaagaaaatgatatctccatcctgaacaaca 7267 Query: 324 tatgttttcccttcctgcctgta 346 |||||||| || ||||| ||||| Sbjct: 7268 tatgttttaccctcctgtctgta 7290 Score = 52.0 bits (26), Expect = 0.002 Identities = 80/98 (81%) Strand = Plus / Plus Query: 407 tacctcggcacatatgaagcctctttcaaaatcagtgtgaattgcaccagcagcttgcgg 466 |||||| ||||| || || ||||| ||||||||||| ||||| || || |||||||| || Sbjct: 7867 tacctcagcacaaataaatcctctctcaaaatcagtatgaatggcccctgcagcttgagg 7926 Query: 467 agctttactttgacgtctgatctgccagcacttcacct 504 ||| || || ||||| || |||||||||||||||| Sbjct: 7927 agcctttgactgccgtcttatttgccagcacttcacct 7964 Score = 48.1 bits (24), Expect = 0.036 Identities = 39/44 (88%) Strand = Plus / Plus Query: 522 aagaagtatatgagatgaattgctgcaaaaccagtcttgatgat 565 |||||||||||||| | |||||||| ||| ||||| |||||||| Sbjct: 8176 aagaagtatatgaggttaattgctgaaaatccagttttgatgat 8219
>ref|XM_641841.1| Dictyostelium discoideum hypothetical protein (DDB0190011), partial mRNA Length = 1182 Score = 58.0 bits (29), Expect = 4e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 420 atgaagcctctttcaaaatcagtgtgaattgcaccagcagcttgcggagcttt 472 ||||| ||| |||| |||||||||||||| ||||||||||||| |||||||| Sbjct: 1022 atgaaacctttttcgaaatcagtgtgaatgacaccagcagcttgtggagcttt 970
>gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, complete sequence Length = 1130447 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Plus Query: 285 ttgaacttgaagaagatgatgtctccatcctgcaccacgta 325 |||||||||||||| |||||||| |||||||||||| |||| Sbjct: 978450 ttgaacttgaagaaaatgatgtcaccatcctgcacctcgta 978490
>ref|XM_843099.1| Leishmania major strain Friedlin hypothetical protein (LMJ_0497) partial mRNA Length = 1179 Score = 58.0 bits (29), Expect = 4e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 285 ttgaacttgaagaagatgatgtctccatcctgcaccacgta 325 |||||||||||||| |||||||| |||||||||||| |||| Sbjct: 1154 ttgaacttgaagaaaatgatgtcaccatcctgcacctcgta 1114
>ref|NM_001019834.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC27E2.03c), partial mRNA Length = 1179 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 430 tttcaaaatcagtgtgaattgcaccagcagcttgcggagc 469 |||||||||||||||||||| |||||||||| || ||||| Sbjct: 1024 tttcaaaatcagtgtgaattacaccagcagcctggggagc 985
>gb|AF110663.1|AF110663 Leishmania major clone LmV9-A1 putative GTP-binding protein gene, partial cds Length = 288 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 285 ttgaacttgaagaagatgatgtctccatcctgcacc 320 |||||||||||||| |||||||| |||||||||||| Sbjct: 261 ttgaacttgaagaaaatgatgtcaccatcctgcacc 226
>emb|Z98978.1|SPAC27E2 S.pombe chromosome I cosmid c27E2 Length = 34595 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Plus Query: 430 tttcaaaatcagtgtgaattgcaccagcagcttgcggagc 469 |||||||||||||||||||| |||||||||| || ||||| Sbjct: 5435 tttcaaaatcagtgtgaattacaccagcagcctggggagc 5474
>gb|DQ443128.1| Bombyx mori GTP binding protein mRNA, complete cds Length = 1478 Score = 54.0 bits (27), Expect = 6e-04 Identities = 30/31 (96%) Strand = Plus / Minus Query: 285 ttgaacttgaagaagatgatgtctccatcct 315 ||||||||||||||||||||||| ||||||| Sbjct: 1218 ttgaacttgaagaagatgatgtcgccatcct 1188
>emb|BX063853.1|CNS09LFL Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC45DF07 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 1001 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 283 cattgaacttgaagaagatgatgtctccatcctgcaccacgta 325 |||| |||||||||||||||||||| ||||||| |||||||| Sbjct: 486 cattaaacttgaagaagatgatgtcgccatcctcgaccacgta 444
>emb|BX060119.1|CNS09IJV Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC40BE03 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 604 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 283 cattgaacttgaagaagatgatgtctccatcctgcaccacgta 325 |||| |||||||||||||||||||| ||||||| |||||||| Sbjct: 461 cattaaacttgaagaagatgatgtcgccatcctcgaccacgta 503
>emb|BX054899.1|CNS09EIV Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC33BB01 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 941 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 283 cattgaacttgaagaagatgatgtctccatcctgcaccacgta 325 |||| |||||||||||||||||||| ||||||| |||||||| Sbjct: 805 cattaaacttgaagaagatgatgtcgccatcctcgaccacgta 763
>emb|BX046530.1|CNS0982E Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC20AH06 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 947 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 283 cattgaacttgaagaagatgatgtctccatcctgcaccacgta 325 |||| |||||||||||||||||||| ||||||| |||||||| Sbjct: 459 cattaaacttgaagaagatgatgtcgccatcctcgaccacgta 501
>emb|BX043324.1|CNS095LC Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC15DE01 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 955 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 283 cattgaacttgaagaagatgatgtctccatcctgcaccacgta 325 |||| |||||||||||||||||||| ||||||| |||||||| Sbjct: 462 cattaaacttgaagaagatgatgtcgccatcctcgaccacgta 504
>emb|BX030841.1|CNS08VYL Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA46AC02 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 976 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 283 cattgaacttgaagaagatgatgtctccatcctgcaccacgta 325 |||| |||||||||||||||||||| ||||||| |||||||| Sbjct: 459 cattaaacttgaagaagatgatgtcgccatcctcgaccacgta 501
>emb|BX024837.1|CNS08RBT Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA38AC06 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 862 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Plus Query: 283 cattgaacttgaagaagatgatgtctccatcctgcaccacgta 325 |||| |||||||||||||||||||| ||||||| |||||||| Sbjct: 465 cattaaacttgaagaagatgatgtcgccatcctcgaccacgta 507
>ref|XM_311198.2| Anopheles gambiae str. PEST ENSANGP00000019083 (ENSANGG00000016594), mRNA Length = 1481 Score = 54.0 bits (27), Expect = 6e-04 Identities = 39/43 (90%) Strand = Plus / Minus Query: 283 cattgaacttgaagaagatgatgtctccatcctgcaccacgta 325 |||| |||||||||||||||||||| ||||||| |||||||| Sbjct: 1344 cattaaacttgaagaagatgatgtcgccatcctcgaccacgta 1302
>gb|BC051155.1| Danio rerio zgc:55768, mRNA (cDNA clone MGC:55768 IMAGE:3816932), complete cds Length = 2150 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 285 ttgaacttgaagaagatgatgtctccatc 313 ||||| ||||||||||||||||||||||| Sbjct: 1257 ttgaatttgaagaagatgatgtctccatc 1229
>ref|NM_214700.1| Danio rerio zgc:55768 (zgc:55768), mRNA Length = 2150 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 285 ttgaacttgaagaagatgatgtctccatc 313 ||||| ||||||||||||||||||||||| Sbjct: 1257 ttgaatttgaagaagatgatgtctccatc 1229
>ref|XM_697624.1| PREDICTED: Danio rerio hypothetical protein LOC555133 (LOC555133), mRNA Length = 1115 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 285 ttgaacttgaagaagatgatgtctccatc 313 ||||| ||||||||||||||||||||||| Sbjct: 296 ttgaatttgaagaagatgatgtctccatc 268
>gb|BC067579.1| Danio rerio zgc:55768, mRNA (cDNA clone MGC:85691 IMAGE:6961791), complete cds Length = 1513 Score = 50.1 bits (25), Expect = 0.009 Identities = 28/29 (96%) Strand = Plus / Minus Query: 285 ttgaacttgaagaagatgatgtctccatc 313 ||||| ||||||||||||||||||||||| Sbjct: 1242 ttgaatttgaagaagatgatgtctccatc 1214
>gb|AY433192.1| Aedes aegypti ASAP ID: 35469 conserved unknown mRNA sequence Length = 544 Score = 48.1 bits (24), Expect = 0.036 Identities = 27/28 (96%) Strand = Plus / Minus Query: 288 aacttgaagaagatgatgtctccatcct 315 |||||||||||||||||||| ||||||| Sbjct: 201 aacttgaagaagatgatgtcaccatcct 174
>gb|AE017263.1| Mesoplasma florum L1 complete genome Length = 793224 Score = 46.1 bits (23), Expect = 0.14 Identities = 35/39 (89%) Strand = Plus / Plus Query: 420 atgaagcctctttcaaaatcagtgtgaattgcaccagca 458 ||||| ||||||||||| |||||||| ||| |||||||| Sbjct: 767464 atgaatcctctttcaaagtcagtgtgtattacaccagca 767502
>ref|NM_001031254.1| Gallus gallus GTP-binding protein PTD004 (PTD004), mRNA Length = 1728 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 339 tgcctgtacttcccagcagcctttacagcag 369 ||||||||||| ||||||||||| ||||||| Sbjct: 1209 tgcctgtactttccagcagccttgacagcag 1179
>ref|XM_950207.1| Theileria annulata strain Ankara hypothetical protein (TA18555) partial mRNA Length = 1275 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 282 acattgaacttgaagaagatgat 304 ||||||||||||||||||||||| Sbjct: 1256 acattgaacttgaagaagatgat 1234
>emb|AJ719559.1| Gallus gallus mRNA for hypothetical protein, clone 3f20 Length = 1728 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 339 tgcctgtacttcccagcagcctttacagcag 369 ||||||||||| ||||||||||| ||||||| Sbjct: 1209 tgcctgtactttccagcagccttgacagcag 1179
>dbj|AK089515.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F730044E04 product:unclassifiable, full insert sequence Length = 4139 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 347 cttcccagcagcctttacagcag 369 ||||||||||||||||||||||| Sbjct: 1050 cttcccagcagcctttacagcag 1072
>dbj|AK089447.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F730031I12 product:RIKEN cDNA 2410114O14 gene, full insert sequence Length = 3717 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 347 cttcccagcagcctttacagcag 369 ||||||||||||||||||||||| Sbjct: 1024 cttcccagcagcctttacagcag 1046
>gb|AC159470.17| Mus musculus 10 BAC RP24-462C5 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 175513 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 347 cttcccagcagcctttacagcag 369 ||||||||||||||||||||||| Sbjct: 86278 cttcccagcagcctttacagcag 86256
>gb|AC167231.12| Mus musculus BAC RP23-416P12 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 205781 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 347 cttcccagcagcctttacagcag 369 ||||||||||||||||||||||| Sbjct: 171919 cttcccagcagcctttacagcag 171897
>gb|AE006051.1| Pasteurella multocida subsp. multocida str. Pm70 section 18 of 204 of the complete genome Length = 8704 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Plus Query: 423 aagcctctttcaaaatcagtgtgaat 448 |||||| ||||||||||||||||||| Sbjct: 219 aagcctttttcaaaatcagtgtgaat 244
>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome Length = 5373180 Score = 44.1 bits (22), Expect = 0.56 Identities = 34/38 (89%) Strand = Plus / Minus Query: 411 tcggcacatatgaagcctctttcaaaatcagtgtgaat 448 ||||||| ||||| ||| ||||||||||||||||||| Sbjct: 3698897 tcggcacgaatgaaacctttttcaaaatcagtgtgaat 3698860
>emb|CR378672.1| Photobacterium profundum SS9; segment 10/12 Length = 348526 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Minus Query: 420 atgaagcctctttcaaaatcagtgtg 445 ||||||||| |||||||||||||||| Sbjct: 165631 atgaagcctttttcaaaatcagtgtg 165606
>emb|AL833799.8| Mouse DNA sequence from clone RP23-26L11 on chromosome 2, complete sequence Length = 208472 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 333 ccttcctgcctgtacttcccag 354 |||||||||||||||||||||| Sbjct: 164876 ccttcctgcctgtacttcccag 164897
>gb|AC169984.2| Mus musculus BAC clone RP23-450I9 from chromosome 6, complete sequence Length = 181976 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 154 cccttccagttggtgcttataccct 178 |||| |||||||||||||||||||| Sbjct: 42084 ccctaccagttggtgcttataccct 42060
>ref|XM_806568.1| Trypanosoma cruzi strain CL Brener OSM3-like kinesin (Tc00.1047053509161.30) partial mRNA Length = 3285 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 281 aacattgaacttgaagaagat 301 ||||||||||||||||||||| Sbjct: 1198 aacattgaacttgaagaagat 1218
>gb|AE014304.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 1 of 11 of the complete sequence Length = 250029 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 254 aattcatcacttctttccacctcca 278 ||||||||||||||||||| ||||| Sbjct: 35383 aattcatcacttctttccagctcca 35359
>ref|XM_663289.1| Cryptosporidium hominis TU502 GTP-binding protein (Chro.10311) partial mRNA Length = 1194 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Minus Query: 420 atgaagcctctttcaaaatcagtgtgaattgcaccagcagcttgcggagcttt 472 ||||||||||| ||||| |||||||| || ||| |||||||| |||||||| Sbjct: 1034 atgaagcctctctcaaagtcagtgtggataatacctgcagcttgtggagcttt 982
>emb|AL161771.17| Human DNA sequence from clone RP11-11L8 on chromosome 13 Contains the SLC10A2 gene for solute carrier family 10 (sodium/bile acid cotransporter family, member 2, complete sequence Length = 171132 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 254 aattcatcacttctttccacctcca 278 ||||||||||||||||||| ||||| Sbjct: 16557 aattcatcacttctttccagctcca 16533
>ref|XM_792116.1| PREDICTED: Strongylocentrotus purpuratus similar to CG1354-PA, isoform A (LOC592602), mRNA Length = 1185 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 333 ccttcctgcctgtacttcccagcagcctt 361 |||| |||||||||||||||||| ||||| Sbjct: 1100 ccttgctgcctgtacttcccagcggcctt 1072
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome Length = 5727534 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Plus Query: 432 tcaaaatcagtgtgaattgcaccagcagcttgcggagcttt 472 ||||| |||||||||||| | ||||| |||||||| ||||| Sbjct: 5708475 tcaaagtcagtgtgaattactccagccgcttgcggcgcttt 5708515
>ref|XM_628099.1| Cryptosporidium parvum Iowa II yyaF/YCHF TRANSFAC/OBG family small GTpase plus RNA binding domain TGS (cgd1_2760), partial mRNA Length = 1197 Score = 42.1 bits (21), Expect = 2.2 Identities = 45/53 (84%) Strand = Plus / Minus Query: 420 atgaagcctctttcaaaatcagtgtgaattgcaccagcagcttgcggagcttt 472 ||||||||||| ||||| |||||||| || ||| |||||||| |||||||| Sbjct: 1037 atgaagcctctctcaaagtcagtgtggataatacctgcagcttgtggagcttt 985
>gb|AC142264.6| Mus musculus BAC clone RP24-394K17 from chromosome 6, complete sequence Length = 162570 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 154 cccttccagttggtgcttataccct 178 |||| |||||||||||||||||||| Sbjct: 45268 ccctaccagttggtgcttataccct 45292
>gb|AC055766.31|AC055766 Mus musculus X BAC RP23-149C7 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 222658 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 351 ccagcagcctttacagcagat 371 ||||||||||||||||||||| Sbjct: 56781 ccagcagcctttacagcagat 56761
>gb|AC012001.6| Homo sapiens BAC clone RP11-465G21 from 2, complete sequence Length = 151336 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 426 cctctttcaaaatcagtgtga 446 ||||||||||||||||||||| Sbjct: 109770 cctctttcaaaatcagtgtga 109790
>gb|AC010451.9| Homo sapiens chromosome 5 clone CTD-2247C11, complete sequence Length = 159853 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 139 aatttatatattcctcccttc 159 ||||||||||||||||||||| Sbjct: 60326 aatttatatattcctcccttc 60346
>gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete genome Length = 1308759 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Minus Query: 430 tttcaaaatcagtgtgaattgcaccagcagctt 462 |||||||||||||||| ||| ||||||| |||| Sbjct: 110332 tttcaaaatcagtgtgtatttcaccagctgctt 110300
>gb|AE017321.1| Wolbachia endosymbiont strain TRS of Brugia malayi, complete genome Length = 1080084 Score = 42.1 bits (21), Expect = 2.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 430 tttcaaaatcagtgtgaattgcaccagcagctt 462 ||||||||||| |||||||| ||||||| |||| Sbjct: 203726 tttcaaaatcattgtgaattacaccagctgctt 203758
>gb|J02677.1|HEAMTS H.haemolyticus DNA methylase gene, complete cds Length = 1476 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 522 aagaagtatatgagatgaatt 542 ||||||||||||||||||||| Sbjct: 573 aagaagtatatgagatgaatt 593
>gb|AC123684.8| Mus musculus chromosome 3, clone RP23-297F14, complete sequence Length = 200566 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 cttcctgcctgtacttccca 353 |||||||||||||||||||| Sbjct: 40101 cttcctgcctgtacttccca 40082 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 cttcctgcctgtacttccca 353 |||||||||||||||||||| Sbjct: 40080 cttcctgcctgtacttccca 40061
>ref|XM_457293.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0B07711g) partial mRNA Length = 1065 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 cagaaacattgaacttgaag 296 |||||||||||||||||||| Sbjct: 918 cagaaacattgaacttgaag 937
>gb|AC121873.3| Mus musculus BAC clone RP24-123L3 from chromosome 19, complete sequence Length = 209035 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 cttcctgcctgtacttccca 353 |||||||||||||||||||| Sbjct: 76151 cttcctgcctgtacttccca 76132
>gb|AC126608.20| Mus musculus chromosome 19, clone RP24-166L20, complete sequence Length = 139126 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 334 cttcctgcctgtacttccca 353 |||||||||||||||||||| Sbjct: 138380 cttcctgcctgtacttccca 138361
>emb|CR962134.2| Medicago truncatula chromosome 5 clone mte1-40n1, COMPLETE SEQUENCE Length = 139651 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 70 tacacttggcagttggcacacatg 93 |||||||||||| ||||||||||| Sbjct: 51606 tacacttggcagctggcacacatg 51583
>emb|Z79755.1|CEF43G9 Caenorhabditis elegans Cosmid F43G9, complete sequence Length = 38166 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 287 gaacttgaagaagatgatgt 306 |||||||||||||||||||| Sbjct: 34443 gaacttgaagaagatgatgt 34424
>emb|BX897727.17| Zebrafish DNA sequence from clone DKEY-90A13 in linkage group 23, complete sequence Length = 236277 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 agcagcctttacagcagatt 372 |||||||||||||||||||| Sbjct: 113051 agcagcctttacagcagatt 113070
>gb|AC098715.3| Mus musculus BAC clone RP23-2D23 from 7, complete sequence Length = 247835 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 438 tcagtgtgaattgcaccagcagct 461 ||||||||||||| |||||||||| Sbjct: 70495 tcagtgtgaattgaaccagcagct 70518
>emb|AL445928.8| Human DNA sequence from clone RP11-305E17 on chromosome 1, complete sequence Length = 173580 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 ttgaacttgaagaagatgat 304 |||||||||||||||||||| Sbjct: 61456 ttgaacttgaagaagatgat 61475
>emb|AL136531.16| Human DNA sequence from clone RP11-314N13 on chromosome 20 Contains the SNPH gene for syntaphilin, the 3' end of the RAD21L1 gene for RAD21-like 1 (S. pombe), the SDCBP2 gene for syndecan binding protein (syntenin) 2, a novel gene, the 5' end of a novel gene, the 3' end of the FKBP1A gene for FK506 binding protein 1A (12kDa) and three CpG islands, complete sequence Length = 119072 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 agaaacattgaacttgaaga 297 |||||||||||||||||||| Sbjct: 98729 agaaacattgaacttgaaga 98710
>emb|X64275.1|SV41RNA Simian parainfluenza virus 41 NP, P-V, M, F, HN and L genes, genomic RNA Length = 15450 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 gtatgttttcccttcctgcc 342 |||||||||||||||||||| Sbjct: 381 gtatgttttcccttcctgcc 400
>emb|CR382134.1| Debaryomyces hansenii chromosome B of strain CBS767 of Debaryomyces hansenii Length = 1349926 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 cagaaacattgaacttgaag 296 |||||||||||||||||||| Sbjct: 602772 cagaaacattgaacttgaag 602753
>gb|AC164298.2| Mus musculus BAC clone RP23-347H20 from chromosome 14, complete sequence Length = 203395 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 tcaaacatcgttcaggtgta 71 |||||||||||||||||||| Sbjct: 35538 tcaaacatcgttcaggtgta 35519
>gb|DQ397623.1| Cenarchaeum symbiosum clone C15D07, complete sequence Length = 43058 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 318 accacgtatgttttcccttc 337 |||||||||||||||||||| Sbjct: 19370 accacgtatgttttcccttc 19389
>gb|AC023395.8| Homo sapiens chromosome 18, clone RP11-484N16, complete sequence Length = 160084 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 326 tgttttcccttcctgcctgt 345 |||||||||||||||||||| Sbjct: 78162 tgttttcccttcctgcctgt 78143
>gb|AC013652.8| Homo sapiens chromosome 15, clone RP11-462P6, complete sequence Length = 189761 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 cattgaacttgaagaagatg 302 |||||||||||||||||||| Sbjct: 131571 cattgaacttgaagaagatg 131552
>gb|AF310989.1| Influenza A virus (A/Red Kont/Delaware/254/94(H8N4)) segment 4 hemagglutinin (HA1) mRNA, partial cds Length = 1229 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 aagaagatgatgtctccatc 313 |||||||||||||||||||| Sbjct: 589 aagaagatgatgtctccatc 570
>gb|AC025370.12| Homo sapiens chromosome 8, clone RP11-318M2, complete sequence Length = 193589 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 278 agaaacattgaacttgaaga 297 |||||||||||||||||||| Sbjct: 63265 agaaacattgaacttgaaga 63284
>gb|AC069351.5| Homo sapiens chromosome 8, clone RP11-432K23, complete sequence Length = 111496 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 agaaacattgaacttgaaga 297 |||||||||||||||||||| Sbjct: 3421 agaaacattgaacttgaaga 3402
>gb|S56065.1| nucleoprotein (NP) [simian virus 41, mRNA, 1898 nt] Length = 1898 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 gtatgttttcccttcctgcc 342 |||||||||||||||||||| Sbjct: 381 gtatgttttcccttcctgcc 400
>ref|NM_059939.3| Caenorhabditis elegans F43G9.10 (F43G9.10) mRNA, complete cds Length = 1478 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 gaacttgaagaagatgatgt 306 |||||||||||||||||||| Sbjct: 581 gaacttgaagaagatgatgt 600
>emb|BX322666.10| Zebrafish DNA sequence from clone CH211-199D3 in linkage group 10, complete sequence Length = 101165 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 atgtctccatcctgcaccac 322 |||||||||||||||||||| Sbjct: 77472 atgtctccatcctgcaccac 77453
>gb|AC022841.4|AC022841 Homo sapiens chromosome 15, clone RP11-213C21, complete sequence Length = 157657 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 cattgaacttgaagaagatg 302 |||||||||||||||||||| Sbjct: 30912 cattgaacttgaagaagatg 30893
>gb|AC119043.4| Homo sapiens 3 BAC RP11-582I9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 164027 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 381 agctcttttagatcttcaaa 400 |||||||||||||||||||| Sbjct: 67722 agctcttttagatcttcaaa 67703
>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome Length = 1584804 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 ccacctccagaaacattgaa 289 |||||||||||||||||||| Sbjct: 894398 ccacctccagaaacattgaa 894417
>emb|BX005447.8| Zebrafish DNA sequence from clone DKEY-29B14, complete sequence Length = 283185 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 cttggcagttggcacacatg 93 |||||||||||||||||||| Sbjct: 211064 cttggcagttggcacacatg 211045
>emb|BX088551.7| Zebrafish DNA sequence from clone CH211-106A19 in linkage group 5, complete sequence Length = 184417 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 cttggcagttggcacacatg 93 |||||||||||||||||||| Sbjct: 39125 cttggcagttggcacacatg 39144
>dbj|BS000229.1| Pan troglodytes chromosome 22 clone:RP43-015P20, map 22, complete sequences Length = 179285 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 266 ctttccacctccagaaacattgaa 289 ||||||||||||||| |||||||| Sbjct: 169532 ctttccacctccagagacattgaa 169555
>emb|AL807769.8| Zebrafish DNA sequence from clone CH211-197G8, complete sequence Length = 188344 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 agcagcctttacagcagatt 372 |||||||||||||||||||| Sbjct: 74275 agcagcctttacagcagatt 74294
>gb|AF363578.1| Homo sapiens ATPase H+ transporting lysosomal protein (ATP6C) gene, complete cds; BAALC (BAALC) gene, complete cds, alternatively spliced; and frizzled-like protein 6 (FZD6) gene, complete cds Length = 347253 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 agaaacattgaacttgaaga 297 |||||||||||||||||||| Sbjct: 283991 agaaacattgaacttgaaga 283972
>gb|AC129885.3| Didelphis virginiana clone LB3-35M17, complete sequence Length = 164861 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 aatttatatattcctccctt 158 |||||||||||||||||||| Sbjct: 103571 aatttatatattcctccctt 103590
>dbj|AP005855.2| Homo sapiens genomic DNA, chromosome 8q22, clone: KB1560G11, complete sequence Length = 152531 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 agaaacattgaacttgaaga 297 |||||||||||||||||||| Sbjct: 133602 agaaacattgaacttgaaga 133583
>dbj|AP002762.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-811I7, complete sequence Length = 189993 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 ttcatcacttctttccacct 275 |||||||||||||||||||| Sbjct: 126368 ttcatcacttctttccacct 126387
>gb|AY653733.1| Acanthamoeba polyphaga mimivirus, complete genome Length = 1181404 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 430 tttcaaaatcagtgtgaatt 449 |||||||||||||||||||| Sbjct: 558054 tttcaaaatcagtgtgaatt 558073
>dbj|AP006374.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT47L09, TM0218, complete sequence Length = 113213 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 tacacttggcagttggcaca 89 |||||||||||||||||||| Sbjct: 53012 tacacttggcagttggcaca 53031
>gb|DP000023.1| Didelphis virginiana target 1 genomic scaffold Length = 1751794 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 aatttatatattcctccctt 158 |||||||||||||||||||| Sbjct: 730850 aatttatatattcctccctt 730869
>emb|AL714027.8| Mouse DNA sequence from clone RP23-96E23 on chromosome X, complete sequence Length = 175809 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 ctttacagcagattcactgc 378 |||||||||||||||||||| Sbjct: 163185 ctttacagcagattcactgc 163166
>dbj|AP004221.1| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1896D3 Length = 160197 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 agaaacattgaacttgaaga 297 |||||||||||||||||||| Sbjct: 15444 agaaacattgaacttgaaga 15425 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,013,451 Number of Sequences: 3902068 Number of extensions: 6013451 Number of successful extensions: 117370 Number of sequences better than 10.0: 100 Number of HSP's better than 10.0 without gapping: 100 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 117029 Number of HSP's gapped (non-prelim): 329 length of query: 638 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 615 effective length of database: 17,143,297,704 effective search space: 10543128087960 effective search space used: 10543128087960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)