ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags11p14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SRA10_CAEEL (Q20405) Serpentine receptor class alpha-10 (Protein... 35 0.20
2HCHA_PSEAE (Q9I4K0) Chaperone protein hchA (Hsp31) 35 0.26
3YHA8_YEAST (P38750) Hypothetical 70.0 kDa protein in PRPS4-STE20... 32 1.3
4HUT1_YEAST (Q12520) UDP-galactose transporter homolog 1 (Multico... 31 2.8
5Y1985_VIBVU (Q8DB38) UPF0209 protein VV1_1985 31 3.7
6AQP12_HUMAN (Q8IXF9) Aquaporin-12A (AQP-12) 30 6.3
7US19_HCMVT (P69337) Transmembrane protein HWLF4 30 8.3
8US19_HCMVA (P69336) Transmembrane protein HWLF4 30 8.3

>SRA10_CAEEL (Q20405) Serpentine receptor class alpha-10 (Protein sra-10)|
          Length = 336

 Score = 35.0 bits (79), Expect = 0.20
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -3

Query: 496 GSTLFNLSLLTSDMWAVAIRLLIYRQQINWLYYVAFAVVAI-GLIVYSLNESSS 338
           G TL++  +LT  +    I + IY   + W Y V FA V++  L++Y +N+  S
Sbjct: 255 GLTLYSTMVLTLRLHKSMIPISIYHNMVWWAYTVPFAAVSLPALLIYRINQVGS 308



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>HCHA_PSEAE (Q9I4K0) Chaperone protein hchA (Hsp31)|
          Length = 291

 Score = 34.7 bits (78), Expect = 0.26
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = +2

Query: 56  PS*HNIFFPLKNSCSSYT*TTHDFISAHFPLPY 154
           P+ HN FFP   S S YT    DF  A +P PY
Sbjct: 15  PAEHNAFFPSPYSLSQYTSAKTDFDGADYPTPY 47



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>YHA8_YEAST (P38750) Hypothetical 70.0 kDa protein in PRPS4-STE20 intergenic|
           region
          Length = 627

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 18/65 (27%), Positives = 34/65 (52%)
 Frame = -3

Query: 598 EAVAWSPTMISLFAGYAVALLMFYTITPFVLKMSGSTLFNLSLLTSDMWAVAIRLLIYRQ 419
           + VA +P +++L  G   A+ +FY +      M G+ LFN ++L   +  +   + IY  
Sbjct: 59  DIVARNPGIVNLITGVNFAMGLFYVV------MMGADLFNSNILFFSVGVLRKAVTIYDL 112

Query: 418 QINWL 404
            I+W+
Sbjct: 113 MISWV 117



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>HUT1_YEAST (Q12520) UDP-galactose transporter homolog 1 (Multicopy suppressor|
           of leflunomide-sensitivity protein 6)
          Length = 339

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 17/89 (19%), Positives = 42/89 (47%)
 Frame = -3

Query: 604 SLEAVAWSPTMISLFAGYAVALLMFYTITPFVLKMSGSTLFNLSLLTSDMWAVAIRLLIY 425
           +++   W   M+  F G      +FYT+  F     GS +  +  +T  M ++ + ++++
Sbjct: 248 TMDPQVWGYLMLYSFCGAMGQCFIFYTLEQF-----GSLVLIMITVTRKMVSMILSIIVF 302

Query: 424 RQQINWLYYVAFAVVAIGLIVYSLNESSS 338
            + + +  +V   +V  G+   +LN+  +
Sbjct: 303 GKSVRFQQWVGMFIVFGGITWEALNKKKA 331



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>Y1985_VIBVU (Q8DB38) UPF0209 protein VV1_1985|
          Length = 672

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
 Frame = -1

Query: 300 SINNFQVMITQQVV-LIWTARKRSNWKKHISVRGSTYKVSSMVSDMVIIKYGSGK---CA 133
           +++NF     Q V  LIW  R +  W+ H   +  TY    + +      +         
Sbjct: 422 TLDNFTAKFEQSVEQLIWDERSQQ-WQVHTQGQHDTYSAVVIANGHEFQTFSQTADIPLG 480

Query: 132 EIKSCVVHVYDEQLFFKGKNMLC*DGY 52
           ++K  V HV   +   K K++LC DGY
Sbjct: 481 QVKGQVSHVPATETLSKLKSVLCYDGY 507



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>AQP12_HUMAN (Q8IXF9) Aquaporin-12A (AQP-12)|
          Length = 295

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 28/92 (30%), Positives = 41/92 (44%)
 Frame = -3

Query: 649 GLLVSAIQIFIFERKSLEAVAWSPTMISLFAGYAVALLMFYTITPFVLKMSGSTLFNLSL 470
           G LV A   F F    L      P     ++G AVALL+  T+T +      S  FN +L
Sbjct: 150 GALVEAACAFCFHLTLLHLRHSPPA----YSGPAVALLV--TVTAYTAGPFTSAFFNPAL 203

Query: 469 LTSDMWAVAIRLLIYRQQINWLYYVAFAVVAI 374
             S  +A +   L+   Q+ WL  +   V+A+
Sbjct: 204 AASVTFACSGHTLLEYVQVYWLGPLTGMVLAV 235



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>US19_HCMVT (P69337) Transmembrane protein HWLF4|
          Length = 240

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 586 WSPTMISLFAGYAVALLMFYTITPFVLKMSGSTLFNLSLL 467
           W P+++SL    A+ L +     PF L +  +TL  ++L+
Sbjct: 155 WLPSVLSLLCATALGLWLLRAAAPFFLGLHATTLLTVTLM 194



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>US19_HCMVA (P69336) Transmembrane protein HWLF4|
          Length = 240

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 586 WSPTMISLFAGYAVALLMFYTITPFVLKMSGSTLFNLSLL 467
           W P+++SL    A+ L +     PF L +  +TL  ++L+
Sbjct: 155 WLPSVLSLLCATALGLWLLRAAAPFFLGLHATTLLTVTLM 194


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,164,794
Number of Sequences: 219361
Number of extensions: 1686336
Number of successful extensions: 4444
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4444
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6257125380
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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