ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags11p09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK108395.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-F09, full insert sequence Length = 779 Score = 281 bits (142), Expect = 1e-72 Identities = 253/290 (87%) Strand = Plus / Minus Query: 370 gctgccctgtcctgatctttcttctgtgcccttatcatcgcacgtcttgcccgggggcgc 429 ||||| |||||||| ||||||||||| ||||||| || || |||||||||||||| ||| Sbjct: 587 gctgctctgtcctgctctttcttctgcgcccttaacagtgcgcgtcttgcccggggacgc 528 Query: 430 atctcacgcacttggcgtggcggcatgacgaaaggctcgagaggccggtcgtggaatggg 489 ||||| |||||||||||| | ||||| | ||||| || ||||| || || ||||||||| Sbjct: 527 atctcgcgcacttggcgtcgtggcatcataaaaggttcaagagggcgatcatggaatggg 468 Query: 490 tgctcgccttcagcaaatatcctcagcttacgatccctatcatcacgcaatttattgcgg 549 ||||| | ||| |||||||||||| ||||||||||| |||||||||||| ||||||| Sbjct: 467 tgctcatttccagaaaatatcctcagtttacgatccctgtcatcacgcaatctattgcga 408 Query: 550 ggaagcatgcgcatgacagctttacggatcacttcagttgggtcttttgccatctggtcc 609 ||||||||||||||||||||||| || || ||||||||||||||||| ||||||||||| Sbjct: 407 ggaagcatgcgcatgacagctttgcgaattgcttcagttgggtctttttccatctggtcc 348 Query: 610 ttgagctttctttccttcagatggccaatataccctgtatgccagtagta 659 ||||| |||||||||||| |||||||||||||||||| ||||||||||| Sbjct: 347 ttgagtcttctttccttcaaatggccaatataccctgtgtgccagtagta 298
>gb|BT018062.1| Zea mays clone EL01N0532G08.c mRNA sequence Length = 892 Score = 248 bits (125), Expect = 2e-62 Identities = 239/277 (86%) Strand = Plus / Minus Query: 385 tctttcttctgtgcccttatcatcgcacgtcttgcccgggggcgcatctcacgcacttgg 444 ||||| ||||| ||||||| ||| ||||| ||||| ||||| |||||||| || ||||| Sbjct: 587 tcttttttctgggcccttaacattgcacgccttgcgcggggtcgcatctcccgaacttgc 528 Query: 445 cgtggcggcatgacgaaaggctcgagaggccggtcgtggaatgggtgctcgccttcagca 504 ||||| ||||| || |||| || ||||| ||||| |||||||| ||||| | ||| | Sbjct: 527 cgtggtggcatcacaaaagcttcaagagggcggtcatggaatggatgctcaattccagaa 468 Query: 505 aatatcctcagcttacgatccctatcatcacgcaatttattgcggggaagcatgcgcatg 564 ||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||| Sbjct: 467 aatatccgcagcttgcgatccctatcatcacgcagtttgttgcggggaagcatgcgcagc 408 Query: 565 acagctttacggatcacttcagttgggtcttttgccatctggtccttgagctttctttcc 624 |||||||| || |||||||||||||||||||| ||||||||||||||||| | |||||| Sbjct: 407 acagctttgcgaatcacttcagttgggtctttctccatctggtccttgagcctcctttcc 348 Query: 625 ttcagatggccaatataccctgtatgccagtagtaaa 661 |||| |||||||| ||||||||||||||||||||||| Sbjct: 347 ttcaaatggccaacataccctgtatgccagtagtaaa 311
>gb|AY105351.1| Zea mays PCO101615 mRNA sequence Length = 1079 Score = 248 bits (125), Expect = 2e-62 Identities = 239/277 (86%) Strand = Plus / Minus Query: 385 tctttcttctgtgcccttatcatcgcacgtcttgcccgggggcgcatctcacgcacttgg 444 ||||| ||||| ||||||| ||| ||||| ||||| ||||| |||||||| || ||||| Sbjct: 635 tcttttttctgggcccttaacattgcacgccttgcacggggtcgcatctcccgtacttgc 576 Query: 445 cgtggcggcatgacgaaaggctcgagaggccggtcgtggaatgggtgctcgccttcagca 504 ||||| ||||| || |||| || ||||| ||||| |||||||| ||||| | ||| | Sbjct: 575 cgtggtggcatcacaaaagcttcaagagggcggtcatggaatggatgctcaattccagaa 516 Query: 505 aatatcctcagcttacgatccctatcatcacgcaatttattgcggggaagcatgcgcatg 564 ||||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||| Sbjct: 515 aatatccgcagcttgcgatccctatcatcacgcagtttgttgcggggaagcatgcgcagc 456 Query: 565 acagctttacggatcacttcagttgggtcttttgccatctggtccttgagctttctttcc 624 |||||||| || |||||||||||||||||||| ||||||||||||||||| | |||||| Sbjct: 455 acagctttgcgaatcacttcagttgggtctttctccatctggtccttgagcctcctttcc 396 Query: 625 ttcagatggccaatataccctgtatgccagtagtaaa 661 |||| |||||||| ||||||||||||||||||||||| Sbjct: 395 ttcaaatggccaacataccctgtatgccagtagtaaa 359
>ref|XM_480211.1| Oryza sativa (japonica cultivar-group), mRNA Length = 690 Score = 246 bits (124), Expect = 8e-62 Identities = 250/292 (85%) Strand = Plus / Minus Query: 370 gctgccctgtcctgatctttcttctgtgcccttatcatcgcacgtcttgcccgggggcgc 429 ||||| |||||||| ||||||||||| ||||| || | || ||||||||| |||||||| Sbjct: 551 gctgctctgtcctgctctttcttctgcgccctaataagtgcccgtcttgcctgggggcgc 492 Query: 430 atctcacgcacttggcgtggcggcatgacgaaaggctcgagaggccggtcgtggaatggg 489 ||||| ||||| || || || ||||| | ||||| || ||||| || || ||||| || Sbjct: 491 atctcgcgcacctgacgcggtggcatcgcaaaaggttcaagagggcgatcatggaaggga 432 Query: 490 tgctcgccttcagcaaatatcctcagcttacgatccctatcatcacgcaatttattgcgg 549 ||||| | | ||| |||||||||||| || ||||||||||||||||||||| |||||||| Sbjct: 431 tgctcacttccagaaaatatcctcagtttgcgatccctatcatcacgcaatctattgcgg 372 Query: 550 ggaagcatgcgcatgacagctttacggatcacttcagttgggtcttttgccatctggtcc 609 |||||||||||||| |||||||| || ||||| || |||||||| ||| ||||||||||| Sbjct: 371 ggaagcatgcgcatcacagctttgcgaatcacctcggttgggtccttttccatctggtcc 312 Query: 610 ttgagctttctttccttcagatggccaatataccctgtatgccagtagtaaa 661 ||||| |||||||||||| |||||||||||||||||| ||||||||||||| Sbjct: 311 ttgagtcttctttccttcaaatggccaatataccctgtgtgccagtagtaaa 260
>gb|AC137606.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0004B23, complete sequence Length = 153136 Score = 147 bits (74), Expect = 5e-32 Identities = 104/114 (91%) Strand = Plus / Plus Query: 530 catcacgcaatttattgcggggaagcatgcgcatgacagctttacggatcacttcagttg 589 ||||||||||| ||||||| ||||||||||||||||||||||| || || ||||||||| Sbjct: 84984 catcacgcaatctattgcgaggaagcatgcgcatgacagctttgcgaattgcttcagttg 85043 Query: 590 ggtcttttgccatctggtccttgagctttctttccttcagatggccaatatacc 643 |||||||| |||||||||||||||| |||||||||||| |||||||||||||| Sbjct: 85044 ggtctttttccatctggtccttgagtcttctttccttcaaatggccaatatacc 85097 Score = 133 bits (67), Expect = 8e-28 Identities = 100/111 (90%) Strand = Plus / Plus Query: 530 catcacgcaatttattgcggggaagcatgcgcatgacagctttacggatcacttcagttg 589 ||||||||||| ||||||| ||||||||||||||||||||||| || || |||||||||| Sbjct: 75489 catcacgcaatctattgcgaggaagcatgcgcatgacagctttgcgaattacttcagttg 75548 Query: 590 ggtcttttgccatctggtccttgagctttctttccttcagatggccaatat 640 |||||||| |||| ||||||||||| ||| |||||||| ||||||||||| Sbjct: 75549 ggtctttttccatgtggtccttgagtcttcattccttcaaatggccaatat 75599 Score = 123 bits (62), Expect = 8e-25 Identities = 134/158 (84%) Strand = Plus / Plus Query: 370 gctgccctgtcctgatctttcttctgtgcccttatcatcgcacgtcttgcccgggggcgc 429 ||||| |||||||| ||||||||||| ||||||| || ||||||||||||||||| ||| Sbjct: 77289 gctgctctgtcctgctctttcttctgcgcccttaacaatgcacgtcttgcccggggacgc 77348 Query: 430 atctcacgcacttggcgtggcggcatgacgaaaggctcgagaggccggtcgtggaatggg 489 ||||| ||||||||||||| ||||| || ||||| || ||||| || || ||||||||| Sbjct: 77349 atctcctgcacttggcgtggtggcatcacaaaaggttcaagagggcgatcatggaatggg 77408 Query: 490 tgctcgccttcagcaaatatcctcagcttacgatccct 527 ||||| | ||| ||||||||||| ||||||||||| Sbjct: 77409 tgctcatttccagaaaatatcctcaatttacgatccct 77446 Score = 115 bits (58), Expect = 2e-22 Identities = 133/158 (84%) Strand = Plus / Plus Query: 370 gctgccctgtcctgatctttcttctgtgcccttatcatcgcacgtcttgcccgggggcgc 429 ||||| |||||||| ||||||||||| ||||||| || || |||||||||||||| ||| Sbjct: 82966 gctgctctgtcctgctctttcttctgcgcccttaacagtgcgcgtcttgcccggggacgc 83025 Query: 430 atctcacgcacttggcgtggcggcatgacgaaaggctcgagaggccggtcgtggaatggg 489 ||||| |||||||||||| | ||||| | ||||| || ||||| || || ||||||||| Sbjct: 83026 atctcgcgcacttggcgtcgtggcatcataaaaggttcaagagggcgatcatggaatggg 83085 Query: 490 tgctcgccttcagcaaatatcctcagcttacgatccct 527 ||||| | ||| |||||||||||| ||||||||||| Sbjct: 83086 tgctcatttccagaaaatatcctcagtttacgatccct 83123
>gb|AC137624.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0680F01, complete sequence Length = 156691 Score = 147 bits (74), Expect = 5e-32 Identities = 104/114 (91%) Strand = Plus / Plus Query: 530 catcacgcaatttattgcggggaagcatgcgcatgacagctttacggatcacttcagttg 589 ||||||||||| ||||||| ||||||||||||||||||||||| || || ||||||||| Sbjct: 7835 catcacgcaatctattgcgaggaagcatgcgcatgacagctttgcgaattgcttcagttg 7894 Query: 590 ggtcttttgccatctggtccttgagctttctttccttcagatggccaatatacc 643 |||||||| |||||||||||||||| |||||||||||| |||||||||||||| Sbjct: 7895 ggtctttttccatctggtccttgagtcttctttccttcaaatggccaatatacc 7948 Score = 123 bits (62), Expect = 8e-25 Identities = 134/158 (84%) Strand = Plus / Plus Query: 370 gctgccctgtcctgatctttcttctgtgcccttatcatcgcacgtcttgcccgggggcgc 429 ||||| |||||||| ||||||||||| ||||||| || ||||||||||||||||| ||| Sbjct: 140 gctgctctgtcctgctctttcttctgcgcccttaacaatgcacgtcttgcccggggacgc 199 Query: 430 atctcacgcacttggcgtggcggcatgacgaaaggctcgagaggccggtcgtggaatggg 489 ||||| ||||||||||||| ||||| || ||||| || ||||| || || ||||||||| Sbjct: 200 atctcctgcacttggcgtggtggcatcacaaaaggttcaagagggcgatcatggaatggg 259 Query: 490 tgctcgccttcagcaaatatcctcagcttacgatccct 527 ||||| | ||| ||||||||||| ||||||||||| Sbjct: 260 tgctcatttccagaaaatatcctcaatttacgatccct 297 Score = 115 bits (58), Expect = 2e-22 Identities = 133/158 (84%) Strand = Plus / Plus Query: 370 gctgccctgtcctgatctttcttctgtgcccttatcatcgcacgtcttgcccgggggcgc 429 ||||| |||||||| ||||||||||| ||||||| || || |||||||||||||| ||| Sbjct: 5817 gctgctctgtcctgctctttcttctgcgcccttaacagtgcgcgtcttgcccggggacgc 5876 Query: 430 atctcacgcacttggcgtggcggcatgacgaaaggctcgagaggccggtcgtggaatggg 489 ||||| |||||||||||| | ||||| | ||||| || ||||| || || ||||||||| Sbjct: 5877 atctcgcgcacttggcgtcgtggcatcataaaaggttcaagagggcgatcatggaatggg 5936 Query: 490 tgctcgccttcagcaaatatcctcagcttacgatccct 527 ||||| | ||| |||||||||||| ||||||||||| Sbjct: 5937 tgctcatttccagaaaatatcctcagtttacgatccct 5974
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 147 bits (74), Expect = 5e-32 Identities = 104/114 (91%) Strand = Plus / Plus Query: 530 catcacgcaatttattgcggggaagcatgcgcatgacagctttacggatcacttcagttg 589 ||||||||||| ||||||| ||||||||||||||||||||||| || || ||||||||| Sbjct: 8599412 catcacgcaatctattgcgaggaagcatgcgcatgacagctttgcgaattgcttcagttg 8599471 Query: 590 ggtcttttgccatctggtccttgagctttctttccttcagatggccaatatacc 643 |||||||| |||||||||||||||| |||||||||||| |||||||||||||| Sbjct: 8599472 ggtctttttccatctggtccttgagtcttctttccttcaaatggccaatatacc 8599525 Score = 133 bits (67), Expect = 8e-28 Identities = 100/111 (90%) Strand = Plus / Plus Query: 530 catcacgcaatttattgcggggaagcatgcgcatgacagctttacggatcacttcagttg 589 ||||||||||| ||||||| ||||||||||||||||||||||| || || |||||||||| Sbjct: 8589917 catcacgcaatctattgcgaggaagcatgcgcatgacagctttgcgaattacttcagttg 8589976 Query: 590 ggtcttttgccatctggtccttgagctttctttccttcagatggccaatat 640 |||||||| |||| ||||||||||| ||| |||||||| ||||||||||| Sbjct: 8589977 ggtctttttccatgtggtccttgagtcttcattccttcaaatggccaatat 8590027 Score = 123 bits (62), Expect = 8e-25 Identities = 134/158 (84%) Strand = Plus / Plus Query: 370 gctgccctgtcctgatctttcttctgtgcccttatcatcgcacgtcttgcccgggggcgc 429 ||||| |||||||| ||||||||||| ||||||| || ||||||||||||||||| ||| Sbjct: 8591717 gctgctctgtcctgctctttcttctgcgcccttaacaatgcacgtcttgcccggggacgc 8591776 Query: 430 atctcacgcacttggcgtggcggcatgacgaaaggctcgagaggccggtcgtggaatggg 489 ||||| ||||||||||||| ||||| || ||||| || ||||| || || ||||||||| Sbjct: 8591777 atctcctgcacttggcgtggtggcatcacaaaaggttcaagagggcgatcatggaatggg 8591836 Query: 490 tgctcgccttcagcaaatatcctcagcttacgatccct 527 ||||| | ||| ||||||||||| ||||||||||| Sbjct: 8591837 tgctcatttccagaaaatatcctcaatttacgatccct 8591874 Score = 115 bits (58), Expect = 2e-22 Identities = 133/158 (84%) Strand = Plus / Plus Query: 370 gctgccctgtcctgatctttcttctgtgcccttatcatcgcacgtcttgcccgggggcgc 429 ||||| |||||||| ||||||||||| ||||||| || || |||||||||||||| ||| Sbjct: 8597394 gctgctctgtcctgctctttcttctgcgcccttaacagtgcgcgtcttgcccggggacgc 8597453 Query: 430 atctcacgcacttggcgtggcggcatgacgaaaggctcgagaggccggtcgtggaatggg 489 ||||| |||||||||||| | ||||| | ||||| || ||||| || || ||||||||| Sbjct: 8597454 atctcgcgcacttggcgtcgtggcatcataaaaggttcaagagggcgatcatggaatggg 8597513 Query: 490 tgctcgccttcagcaaatatcctcagcttacgatccct 527 ||||| | ||| |||||||||||| ||||||||||| Sbjct: 8597514 tgctcatttccagaaaatatcctcagtttacgatccct 8597551
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 139 bits (70), Expect = 1e-29 Identities = 103/114 (90%) Strand = Plus / Minus Query: 530 catcacgcaatttattgcggggaagcatgcgcatgacagctttacggatcacttcagttg 589 ||||||||||| |||||||||||||||||||||| |||||||| || ||||| || |||| Sbjct: 3630821 catcacgcaatctattgcggggaagcatgcgcatcacagctttgcgaatcacctcggttg 3630762 Query: 590 ggtcttttgccatctggtccttgagctttctttccttcagatggccaatatacc 643 |||| ||| |||||||||||||||| |||||||||||| |||||||||||||| Sbjct: 3630761 ggtccttttccatctggtccttgagtcttctttccttcaaatggccaatatacc 3630708 Score = 81.8 bits (41), Expect = 3e-12 Identities = 131/161 (81%) Strand = Plus / Minus Query: 370 gctgccctgtcctgatctttcttctgtgcccttatcatcgcacgtcttgcccgggggcgc 429 ||||| |||||||| ||||||||||| ||||| || | || ||||||||| |||||||| Sbjct: 3631624 gctgctctgtcctgctctttcttctgcgccctaataagtgcccgtcttgcctgggggcgc 3631565 Query: 430 atctcacgcacttggcgtggcggcatgacgaaaggctcgagaggccggtcgtggaatggg 489 ||||| ||||| || || || ||||| | ||||| || ||||| || || ||||| || Sbjct: 3631564 atctcgcgcacctgacgcggtggcatcgcaaaaggttcaagagggcgatcatggaaggga 3631505 Query: 490 tgctcgccttcagcaaatatcctcagcttacgatccctatc 530 ||||| | | ||| |||||||||||| || ||||||||||| Sbjct: 3631504 tgctcacttccagaaaatatcctcagtttgcgatccctatc 3631464
>dbj|AP005504.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0577B11 Length = 180355 Score = 139 bits (70), Expect = 1e-29 Identities = 103/114 (90%) Strand = Plus / Minus Query: 530 catcacgcaatttattgcggggaagcatgcgcatgacagctttacggatcacttcagttg 589 ||||||||||| |||||||||||||||||||||| |||||||| || ||||| || |||| Sbjct: 109327 catcacgcaatctattgcggggaagcatgcgcatcacagctttgcgaatcacctcggttg 109268 Query: 590 ggtcttttgccatctggtccttgagctttctttccttcagatggccaatatacc 643 |||| ||| |||||||||||||||| |||||||||||| |||||||||||||| Sbjct: 109267 ggtccttttccatctggtccttgagtcttctttccttcaaatggccaatatacc 109214 Score = 81.8 bits (41), Expect = 3e-12 Identities = 131/161 (81%) Strand = Plus / Minus Query: 370 gctgccctgtcctgatctttcttctgtgcccttatcatcgcacgtcttgcccgggggcgc 429 ||||| |||||||| ||||||||||| ||||| || | || ||||||||| |||||||| Sbjct: 110130 gctgctctgtcctgctctttcttctgcgccctaataagtgcccgtcttgcctgggggcgc 110071 Query: 430 atctcacgcacttggcgtggcggcatgacgaaaggctcgagaggccggtcgtggaatggg 489 ||||| ||||| || || || ||||| | ||||| || ||||| || || ||||| || Sbjct: 110070 atctcgcgcacctgacgcggtggcatcgcaaaaggttcaagagggcgatcatggaaggga 110011 Query: 490 tgctcgccttcagcaaatatcctcagcttacgatccctatc 530 ||||| | | ||| |||||||||||| || ||||||||||| Sbjct: 110010 tgctcacttccagaaaatatcctcagtttgcgatccctatc 109970
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 131 bits (66), Expect = 3e-27 Identities = 135/158 (85%) Strand = Plus / Minus Query: 370 gctgccctgtcctgatctttcttctgtgcccttatcatcgcacgtcttgcccgggggcgc 429 ||||| |||||||| ||||||||||| |||||||||| |||||||||||||||| ||| Sbjct: 38993198 gctgctctgtcctgctctttcttctgcgcccttatcagtacacgtcttgcccggggacgc 38993139 Query: 430 atctcacgcacttggcgtggcggcatgacgaaaggctcgagaggccggtcgtggaatggg 489 |||||||||||||||||||| ||||| || ||||| || ||||| || || |||||||| Sbjct: 38993138 atctcacgcacttggcgtggtggcatcacaaaaggttcaagagggcgatcatggaatgga 38993079 Query: 490 tgctcgccttcagcaaatatcctcagcttacgatccct 527 ||||| | ||| |||||||||||| || |||||||| Sbjct: 38993078 tgctcatttccagaaaatatcctcagtttgcgatccct 38993041
>dbj|AP003349.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0674H09 Length = 142955 Score = 131 bits (66), Expect = 3e-27 Identities = 135/158 (85%) Strand = Plus / Minus Query: 370 gctgccctgtcctgatctttcttctgtgcccttatcatcgcacgtcttgcccgggggcgc 429 ||||| |||||||| ||||||||||| |||||||||| |||||||||||||||| ||| Sbjct: 66831 gctgctctgtcctgctctttcttctgcgcccttatcagtacacgtcttgcccggggacgc 66772 Query: 430 atctcacgcacttggcgtggcggcatgacgaaaggctcgagaggccggtcgtggaatggg 489 |||||||||||||||||||| ||||| || ||||| || ||||| || || |||||||| Sbjct: 66771 atctcacgcacttggcgtggtggcatcacaaaaggttcaagagggcgatcatggaatgga 66712 Query: 490 tgctcgccttcagcaaatatcctcagcttacgatccct 527 ||||| | ||| |||||||||||| || |||||||| Sbjct: 66711 tgctcatttccagaaaatatcctcagtttgcgatccct 66674
>dbj|AP003418.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506A10 Length = 145265 Score = 131 bits (66), Expect = 3e-27 Identities = 135/158 (85%) Strand = Plus / Minus Query: 370 gctgccctgtcctgatctttcttctgtgcccttatcatcgcacgtcttgcccgggggcgc 429 ||||| |||||||| ||||||||||| |||||||||| |||||||||||||||| ||| Sbjct: 11178 gctgctctgtcctgctctttcttctgcgcccttatcagtacacgtcttgcccggggacgc 11119 Query: 430 atctcacgcacttggcgtggcggcatgacgaaaggctcgagaggccggtcgtggaatggg 489 |||||||||||||||||||| ||||| || ||||| || ||||| || || |||||||| Sbjct: 11118 atctcacgcacttggcgtggtggcatcacaaaaggttcaagagggcgatcatggaatgga 11059 Query: 490 tgctcgccttcagcaaatatcctcagcttacgatccct 527 ||||| | ||| |||||||||||| || |||||||| Sbjct: 11058 tgctcatttccagaaaatatcctcagtttgcgatccct 11021
>ref|NM_111045.3| Arabidopsis thaliana structural constituent of ribosome AT3G01790 transcript variant AT3G01790.1 mRNA, complete cds Length = 881 Score = 69.9 bits (35), Expect = 1e-08 Identities = 86/103 (83%) Strand = Plus / Minus Query: 503 caaatatcctcagcttacgatccctatcatcacgcaatttattgcggggaagcatgcgca 562 |||||||||||||||| |||||||| ||||||||||| || || | |||||||||||| Sbjct: 522 caaatatcctcagcttccgatccctgtcatcacgcaaattgttacttggaagcatgcgcc 463 Query: 563 tgacagctttacggatcacttcagttgggtcttttgccatctg 605 |||||| ||||| || || || || || ||||| |||||||| Sbjct: 462 agacagccttacgaatgacctctgtgggatctttggccatctg 420
>ref|NM_180163.2| Arabidopsis thaliana structural constituent of ribosome AT3G01790 transcript variant AT3G01790.2 mRNA, complete cds Length = 849 Score = 69.9 bits (35), Expect = 1e-08 Identities = 86/103 (83%) Strand = Plus / Minus Query: 503 caaatatcctcagcttacgatccctatcatcacgcaatttattgcggggaagcatgcgca 562 |||||||||||||||| |||||||| ||||||||||| || || | |||||||||||| Sbjct: 468 caaatatcctcagcttccgatccctgtcatcacgcaaattgttacttggaagcatgcgcc 409 Query: 563 tgacagctttacggatcacttcagttgggtcttttgccatctg 605 |||||| ||||| || || || || || ||||| |||||||| Sbjct: 408 agacagccttacgaatgacctctgtgggatctttggccatctg 366
>gb|BT010192.1| Arabidopsis thaliana At1g01640 gene, complete cds Length = 618 Score = 69.9 bits (35), Expect = 1e-08 Identities = 86/103 (83%) Strand = Plus / Minus Query: 503 caaatatcctcagcttacgatccctatcatcacgcaatttattgcggggaagcatgcgca 562 |||||||||||||||| |||||||| ||||||||||| || || | |||||||||||| Sbjct: 427 caaatatcctcagcttccgatccctgtcatcacgcaaattgttacttggaagcatgcgcc 368 Query: 563 tgacagctttacggatcacttcagttgggtcttttgccatctg 605 |||||| ||||| || || || || || ||||| |||||||| Sbjct: 367 agacagccttacgaatgacctctgtgggatctttggccatctg 325
>emb|BX822660.1|CNS0A7H4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB57ZA01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 671 Score = 69.9 bits (35), Expect = 1e-08 Identities = 86/103 (83%) Strand = Plus / Minus Query: 503 caaatatcctcagcttacgatccctatcatcacgcaatttattgcggggaagcatgcgca 562 |||||||||||||||| |||||||| ||||||||||| || || | |||||||||||| Sbjct: 309 caaatatcctcagcttccgatccctgtcatcacgcaaattgttacttggaagcatgcgcc 250 Query: 563 tgacagctttacggatcacttcagttgggtcttttgccatctg 605 |||||| ||||| || || || || || ||||| |||||||| Sbjct: 249 agacagccttacgaatgacctctgtgggatctttggccatctg 207
>emb|BX822466.1|CNS0A7AA Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB3ZC11 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 849 Score = 69.9 bits (35), Expect = 1e-08 Identities = 86/103 (83%) Strand = Plus / Minus Query: 503 caaatatcctcagcttacgatccctatcatcacgcaatttattgcggggaagcatgcgca 562 |||||||||||||||| |||||||| ||||||||||| || || | |||||||||||| Sbjct: 467 caaatatcctcagcttccgatccctgtcatcacgcaaattgttacttggaagcatgcgcc 408 Query: 563 tgacagctttacggatcacttcagttgggtcttttgccatctg 605 |||||| ||||| || || || || || ||||| |||||||| Sbjct: 407 agacagccttacgaatgacctctgtgggatctttggccatctg 365
>emb|BX822472.1|CNS0A705 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB3ZE12 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 850 Score = 69.9 bits (35), Expect = 1e-08 Identities = 86/103 (83%) Strand = Plus / Minus Query: 503 caaatatcctcagcttacgatccctatcatcacgcaatttattgcggggaagcatgcgca 562 |||||||||||||||| |||||||| ||||||||||| || || | |||||||||||| Sbjct: 468 caaatatcctcagcttccgatccctgtcatcacgcaaattgttacttggaagcatgcgcc 409 Query: 563 tgacagctttacggatcacttcagttgggtcttttgccatctg 605 |||||| ||||| || || || || || ||||| |||||||| Sbjct: 408 agacagccttacgaatgacctctgtgggatctttggccatctg 366
>emb|BX824635.1|CNS0A4TG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH61ZA11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 832 Score = 69.9 bits (35), Expect = 1e-08 Identities = 86/103 (83%) Strand = Plus / Minus Query: 503 caaatatcctcagcttacgatccctatcatcacgcaatttattgcggggaagcatgcgca 562 |||||||||||||||| |||||||| ||||||||||| || || | |||||||||||| Sbjct: 470 caaatatcctcagcttccgatccctgtcatcacgcaaattgttacttggaagcatgcgcc 411 Query: 563 tgacagctttacggatcacttcagttgggtcttttgccatctg 605 |||||| ||||| || || || || || ||||| |||||||| Sbjct: 410 agacagccttacgaatgacctctgtgggatctttggccatctg 368
>gb|BT013176.1| Lycopersicon esculentum clone 134251R, mRNA sequence Length = 1043 Score = 58.0 bits (29), Expect = 4e-05 Identities = 74/89 (83%) Strand = Plus / Minus Query: 520 cgatccctatcatcacgcaatttattgcggggaagcatgcgcatgacagctttacggatc 579 ||||| |||||||||||||| ||||| | || ||||| |||| ||||||||| || || Sbjct: 459 cgatctctatcatcacgcaacttatttcttggcagcattcgcaggacagctttgcgaata 400 Query: 580 acttcagttgggtcttttgccatctggtc 608 ||||| ||||| || || ||||||||||| Sbjct: 399 acttctgttggatccttagccatctggtc 371
>gb|AC130307.3| Homo sapiens chromosome 11, clone RP11-15D10, complete sequence Length = 159817 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Minus Query: 145 acaaagcttgataagattctag 166 |||||||||||||||||||||| Sbjct: 27103 acaaagcttgataagattctag 27082
>emb|AL929414.5| Mouse DNA sequence from clone RP23-222A19 on chromosome 11, complete sequence Length = 153928 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Plus Query: 614 gctttctttccttcagatggccaata 639 |||||| ||||||||||||||||||| Sbjct: 50634 gctttcattccttcagatggccaata 50659
>gb|AC090858.6| Homo sapiens chromosome 11, clone RP11-676E14, complete sequence Length = 168906 Score = 44.1 bits (22), Expect = 0.58 Identities = 22/22 (100%) Strand = Plus / Plus Query: 145 acaaagcttgataagattctag 166 |||||||||||||||||||||| Sbjct: 58237 acaaagcttgataagattctag 58258
>gb|AC153132.4| Mus musculus BAC clone RP24-362N19 from chromosome 13, complete sequence Length = 178970 Score = 44.1 bits (22), Expect = 0.58 Identities = 25/26 (96%) Strand = Plus / Plus Query: 594 ttttgccatctggtccttgagctttc 619 ||||||||| |||||||||||||||| Sbjct: 128236 ttttgccatttggtccttgagctttc 128261
>gb|AF067776.1|AF067776 Abiotrophia defectiva extracellular matrix binding protein (emb) gene, partial cds Length = 6413 Score = 44.1 bits (22), Expect = 0.58 Identities = 28/30 (93%) Strand = Plus / Minus Query: 338 cattcttagctgcttctccctcggctttct 367 ||||||||||||||||| ||| |||||||| Sbjct: 2273 cattcttagctgcttctaccttggctttct 2244
>gb|AC010797.4|ATAC010797 Arabidopsis thaliana chromosome III BAC F28J7 genomic sequence, complete sequence Length = 89154 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 503 caaatatcctcagcttacgatccct 527 |||||||||||||||| |||||||| Sbjct: 28768 caaatatcctcagcttccgatccct 28792
>dbj|AK009132.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched library, clone:2310004B02 product:interleukin-1 receptor-associated kinase 1, full insert sequence Length = 1205 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 379 tcctgatctttcttctgtgccctta 403 ||||||||||| ||||||||||||| Sbjct: 1093 tcctgatctttattctgtgccctta 1117
>ref|XM_640882.1| Dictyostelium discoideum hypothetical protein (DDB0190268), partial mRNA Length = 2772 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 tcaaagagaaaagagatacg 228 |||||||||||||||||||| Sbjct: 443 tcaaagagaaaagagatacg 462
>ref|XM_657344.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN4832.2), mRNA Length = 1356 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 477 gtcgtggaatgggtgctcgc 496 |||||||||||||||||||| Sbjct: 442 gtcgtggaatgggtgctcgc 423
>emb|AL035555.11|HS217P22 Human DNA sequence from clone RP1-217P22 on chromosome 6p21.1-21.31 Contains part of the DNAH8 gene for dynein axonemal heavy polypeptide 8 and a novel pseudogene similar to part of zuotin related factor-1 (ZRF1), complete sequence Length = 130796 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 gaaaggaaattcagaatgag 73 |||||||||||||||||||| Sbjct: 53746 gaaaggaaattcagaatgag 53765
>ref|XM_967054.1| PREDICTED: Tribolium castaneum similar to hydroxyprostaglandin dehydrogenase 15 (NAD) (LOC660851), mRNA Length = 1440 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 617 ttctttccttcagatggcca 636 |||||||||||||||||||| Sbjct: 1415 ttctttccttcagatggcca 1396
>emb|AJ235273.1|RPXX04 Rickettsia prowazekii strain Madrid E, complete genome; segment 4/4 Length = 237523 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 tcatcaaagagaaaagagat 225 |||||||||||||||||||| Sbjct: 49528 tcatcaaagagaaaagagat 49547
>emb|AJ131049.1|CAR131049 Cicer arietinum mRNA for hypothetical protein Length = 1230 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 349 gcttctccctcggctttctt 368 |||||||||||||||||||| Sbjct: 635 gcttctccctcggctttctt 616
>emb|CR456624.7| Zebrafish DNA sequence from clone CH211-69E5 in linkage group 13, complete sequence Length = 172195 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 ttcttctgtgcccttatcat 407 |||||||||||||||||||| Sbjct: 3178 ttcttctgtgcccttatcat 3197
>gb|AC007249.5| Homo sapiens BAC clone RP11-320M2 from 2, complete sequence Length = 200491 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 tctcagcaatcttgctgcct 142 |||||||||||||||||||| Sbjct: 146467 tctcagcaatcttgctgcct 146486
>gb|AF224746.1|AF224746 Xenopus laevis bicaudal-C (Bic-C) mRNA, complete cds Length = 3300 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 caacaggcttctcagcaatc 133 |||||||||||||||||||| Sbjct: 1657 caacaggcttctcagcaatc 1676
>emb|Z82598.1|RPZ82598 R.prowazekii genomic DNA fragment (clone A335R) Length = 509 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 tcatcaaagagaaaagagat 225 |||||||||||||||||||| Sbjct: 408 tcatcaaagagaaaagagat 389
>emb|CR293523.11| Zebrafish DNA sequence from clone DKEY-104J7 in linkage group 7, complete sequence Length = 214581 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 caacacaaaagactacatgt 206 |||||||||||||||||||| Sbjct: 206658 caacacaaaagactacatgt 206639
>emb|CR854857.19| Zebrafish DNA sequence from clone CH211-129F7 in linkage group 13, complete sequence Length = 170079 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 388 ttcttctgtgcccttatcat 407 |||||||||||||||||||| Sbjct: 139617 ttcttctgtgcccttatcat 139636
>gb|AC106824.2| Homo sapiens chromosome 5 clone RP11-81H9, complete sequence Length = 127326 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 tgtcatcaaagagaaaagag 223 |||||||||||||||||||| Sbjct: 46849 tgtcatcaaagagaaaagag 46830 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,623,255 Number of Sequences: 3902068 Number of extensions: 5623255 Number of successful extensions: 108945 Number of sequences better than 10.0: 40 Number of HSP's better than 10.0 without gapping: 40 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 108785 Number of HSP's gapped (non-prelim): 160 length of query: 661 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 638 effective length of database: 17,143,297,704 effective search space: 10937423935152 effective search space used: 10937423935152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
