ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags12e15 |
|---|---|
| Clone Library Name | barley_pub |
>PSD6_ORYSA (Q8W425) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory particle non-ATPase subunit 7) (OsRPN7) Length = 389 Score = 229 bits (584), Expect = 5e-60 Identities = 116/122 (95%), Positives = 117/122 (95%) Frame = -3 Query: 594 QYKSFFVAFSGLMEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFGVT 415 QYKSFF AFSGL EQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFGVT Sbjct: 267 QYKSFFAAFSGLTEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFGVT 326 Query: 414 VDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQGDFLLNRIQKLSRV 235 VDFID ELSRFIAAGKLHCKIDKVA VLETNRPD RNAFYQ+TIKQGDFLLNRIQKLSRV Sbjct: 327 VDFIDLELSRFIAAGKLHCKIDKVACVLETNRPDARNAFYQATIKQGDFLLNRIQKLSRV 386 Query: 234 ID 229 ID Sbjct: 387 ID 388
>PSD6_ARATH (Q93Y35) Probable 26S proteasome non-ATPase regulatory subunit 6| Length = 387 Score = 215 bits (547), Expect = 9e-56 Identities = 106/122 (86%), Positives = 114/122 (93%) Frame = -3 Query: 594 QYKSFFVAFSGLMEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFGVT 415 QYK+FF AF+G+ QIK DRYL PHFR+YMREVRTVVYSQFLESYKSVT+EAMA AFGV+ Sbjct: 265 QYKAFFSAFAGMAVQIKYDRYLYPHFRFYMREVRTVVYSQFLESYKSVTVEAMAKAFGVS 324 Query: 414 VDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQGDFLLNRIQKLSRV 235 VDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPD +NA YQ+TIKQGDFLLNRIQKLSRV Sbjct: 325 VDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRV 384 Query: 234 ID 229 ID Sbjct: 385 ID 386
>PSD6_DROME (Q9V3G7) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit S10) (Rpn7 protein) Length = 389 Score = 166 bits (421), Expect = 4e-41 Identities = 75/122 (61%), Positives = 105/122 (86%) Frame = -3 Query: 594 QYKSFFVAFSGLMEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFGVT 415 QY++F+V +G+ +Q++LD + PH+RYY+RE+R + Y+Q LESY+S+T++ MA +FGVT Sbjct: 267 QYENFYVHLAGVEKQLRLDYLIHPHYRYYVREMRILGYTQLLESYRSLTLQYMAESFGVT 326 Query: 414 VDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQGDFLLNRIQKLSRV 235 V++IDQEL+RFIAAG+LH K+D+V G++ETNRPD +N YQ+TIKQGD LLNRIQKLSRV Sbjct: 327 VEYIDQELARFIAAGRLHAKVDRVGGIVETNRPDNKNWQYQATIKQGDLLLNRIQKLSRV 386 Query: 234 ID 229 I+ Sbjct: 387 IN 388
>PSD6_MOUSE (Q99JI4) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit S10) (p42A) Length = 389 Score = 156 bits (394), Expect = 5e-38 Identities = 76/122 (62%), Positives = 96/122 (78%) Frame = -3 Query: 594 QYKSFFVAFSGLMEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFGVT 415 +Y FF + + + +++K D PH+RYY+RE+R YSQ LESY+S+T+ MA AFGV Sbjct: 267 RYSVFFQSLAIVEQEMKKDWLFAPHYRYYVREMRIHAYSQLLESYRSLTLGYMAEAFGVG 326 Query: 414 VDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQGDFLLNRIQKLSRV 235 VDFIDQELSRFIAAG+LHCKIDKV ++ETNRPD +N YQ TIK+GD LLNR+QKLSRV Sbjct: 327 VDFIDQELSRFIAAGRLHCKIDKVNEIVETNRPDSKNWQYQETIKKGDLLLNRVQKLSRV 386 Query: 234 ID 229 I+ Sbjct: 387 IN 388
>PSD6_HUMAN (Q15008) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit S10) (p42A) (Proteasome regulatory particle subunit p44S10) (Phosphonoformate immuno-associated protein 4) (Breast cancer-associated protein SGA-113M) Length = 389 Score = 155 bits (391), Expect = 1e-37 Identities = 75/122 (61%), Positives = 96/122 (78%) Frame = -3 Query: 594 QYKSFFVAFSGLMEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFGVT 415 +Y FF + + + +++K D PH+RYY+RE+R YSQ LESY+S+T+ MA AFGV Sbjct: 267 RYSVFFQSLAVVEQEMKKDWLFAPHYRYYVREMRIHAYSQLLESYRSLTLGYMAEAFGVG 326 Query: 414 VDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQGDFLLNRIQKLSRV 235 V+FIDQELSRFIAAG+LHCKIDKV ++ETNRPD +N YQ TIK+GD LLNR+QKLSRV Sbjct: 327 VEFIDQELSRFIAAGRLHCKIDKVNEIVETNRPDSKNWQYQETIKKGDLLLNRVQKLSRV 386 Query: 234 ID 229 I+ Sbjct: 387 IN 388
>PSD6_CAEEL (Q20585) 26S proteasome non-ATPase regulatory subunit 6 (26S| proteasome regulatory subunit rpn-7) Length = 410 Score = 129 bits (325), Expect = 5e-30 Identities = 65/122 (53%), Positives = 82/122 (67%), Gaps = 1/122 (0%) Frame = -3 Query: 591 YKSFFVAFSGL-MEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFGVT 415 Y FF+ + L E+ K DRYL PHF YY R +R Y QFL YK+V ++ MA FGV+ Sbjct: 288 YDRFFIQLAALESERFKFDRYLSPHFNYYSRGMRHRAYEQFLTPYKTVRIDMMAKDFGVS 347 Query: 414 VDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQGDFLLNRIQKLSRV 235 FID+EL R IA G+L C+ID V GV+E N D +N Y++ IK GD LLNRIQKL+RV Sbjct: 348 RAFIDRELHRLIATGQLQCRIDAVNGVIEVNHRDSKNHLYKAVIKDGDILLNRIQKLARV 407 Query: 234 ID 229 I+ Sbjct: 408 IN 409
>RPN7_SCHPO (Q10335) Probable 26S proteasome regulatory subunit rpn7| Length = 409 Score = 126 bits (317), Expect = 4e-29 Identities = 57/124 (45%), Positives = 90/124 (72%), Gaps = 1/124 (0%) Frame = -3 Query: 600 IAQYKSFFVAFSGL-MEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAF 424 + Y FF + + + +K D++L H+RYY+RE+R Y+Q LESY+++++++MA++F Sbjct: 279 LCDYSGFFRTLADVEVNHLKCDQFLVAHYRYYVREMRRRAYAQLLESYRALSIDSMAASF 338 Query: 423 GVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQGDFLLNRIQKL 244 GV+VD+ID++L+ FI KL+C ID+V GV+ TNRPDE+N YQ +KQGD LLN++QK Sbjct: 339 GVSVDYIDRDLASFIPDNKLNCVIDRVNGVVFTNRPDEKNRQYQEVVKQGDVLLNKLQKY 398 Query: 243 SRVI 232 + Sbjct: 399 QATV 402
>RPN7_YEAST (Q06103) 26S proteasome regulatory subunit RPN7| Length = 429 Score = 110 bits (276), Expect = 2e-24 Identities = 50/102 (49%), Positives = 76/102 (74%) Frame = -3 Query: 537 RYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFGVTVDFIDQELSRFIAAGKLHC 358 +YL H +++RE+R VY+Q LESYK++++++MASAFGV+V F+D +L +FI +L+C Sbjct: 320 KYLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNC 379 Query: 357 KIDKVAGVLETNRPDERNAFYQSTIKQGDFLLNRIQKLSRVI 232 ID+V G++ETNRPD +NA Y +KQGD LL ++QK + Sbjct: 380 VIDRVNGIVETNRPDNKNAQYHLLVKQGDGLLTKLQKYGAAV 421
>CSN1_XENLA (Q6NRT5) COP9 signalosome complex subunit 1 (Signalosome subunit 1)| Length = 487 Score = 62.4 bits (150), Expect = 1e-09 Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 4/110 (3%) Frame = -3 Query: 591 YKSFFVAFSGLMEQIK----LDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAF 424 Y+S + + ++++IK LD YL PH R ++R Q+ Y S M MA+AF Sbjct: 330 YESKYASCLKMLDEIKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMYKMATAF 389 Query: 423 GVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQG 274 TV ++ EL++ I G ++ +ID + +L D+R+ ++ +++ G Sbjct: 390 NTTVSALEDELTQLILEGLINARIDSHSKILYARDVDQRSTTFEKSLQMG 439
>CSN1_MOUSE (Q99LD4) COP9 signalosome complex subunit 1 (Signalosome subunit 1)| (SGN1) (JAB1-containing signalosome subunit 1) (G protein pathway suppressor 1) (GPS1 protein) Length = 471 Score = 60.8 bits (146), Expect = 3e-09 Identities = 30/108 (27%), Positives = 54/108 (50%) Frame = -3 Query: 597 AQYKSFFVAFSGLMEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFGV 418 ++Y S + + + LD YL PH R ++R Q+ Y S M MA+AF Sbjct: 316 SKYASCLKMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHKMAAAFNT 375 Query: 417 TVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQG 274 TV ++ EL++ I G ++ +ID + +L D+R+ ++ ++ G Sbjct: 376 TVAALEDELTQLILEGLINARIDSHSKILYARDVDQRSTTFEKSLLMG 423
>CSN1_RAT (P97834) COP9 signalosome complex subunit 1 (Signalosome subunit 1)| (SGN1) (JAB1-containing signalosome subunit 1) (G protein pathway suppressor 1) (MFH protein) Length = 471 Score = 60.5 bits (145), Expect = 4e-09 Identities = 30/108 (27%), Positives = 54/108 (50%) Frame = -3 Query: 597 AQYKSFFVAFSGLMEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFGV 418 ++Y S + + + LD YL PH R ++R Q+ Y S M MA+AF Sbjct: 316 SKYASCLKMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHKMAAAFNT 375 Query: 417 TVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQG 274 TV ++ EL++ I G ++ +ID + +L D+R+ ++ ++ G Sbjct: 376 TVAALEDELTQVILEGLINARIDSHSKILYARDVDQRSTTFEKSLLMG 423
>CSN1_HUMAN (Q13098) COP9 signalosome complex subunit 1 (Signalosome subunit 1)| (SGN1) (JAB1-containing signalosome subunit 1) (G protein pathway suppressor 1) (GPS1 protein) (MFH protein) Length = 471 Score = 59.7 bits (143), Expect = 6e-09 Identities = 29/108 (26%), Positives = 53/108 (49%) Frame = -3 Query: 597 AQYKSFFVAFSGLMEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFGV 418 ++Y S + + + LD YL PH R ++R Q+ Y S M MA+AF Sbjct: 316 SKYASCLKMLDEMKDNLLLDMYLAPHVRTLYTQIRNRALIQYFSPYVSADMHRMAAAFNT 375 Query: 417 TVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQG 274 TV ++ EL++ I G + ++D + +L D+R+ ++ ++ G Sbjct: 376 TVAALEDELTQLILEGLISARVDSHSKILYARDVDQRSTTFEKSLLMG 423
>CSN1_DROME (Q9VVU5) COP9 signalosome complex subunit 1b (Signalosome subunit| 1b) (Dch1-2) Length = 525 Score = 53.5 bits (127), Expect = 5e-07 Identities = 26/108 (24%), Positives = 50/108 (46%) Frame = -3 Query: 597 AQYKSFFVAFSGLMEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFGV 418 ++Y S + + + +D Y+ PH ++R Q+ Y S M MA AF Sbjct: 365 SKYASCLTLLDEIRDNLLVDMYIAPHVTTLYTKIRNRALIQYFSPYMSADMHKMAMAFNS 424 Query: 417 TVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQG 274 +V ++ E+ + I G++ +ID +L D+RN+ ++ + G Sbjct: 425 SVGDLENEVMQLILDGQIQARIDSHNKILFAKEADQRNSTFERALIMG 472
>CSN1_ARATH (P45432) COP9 signalosome complex subunit 1 (CSN complex subunit 1)| (Constitutive photomorphogenesis protein 11) (FUSCA protein 6) (FUSCA6) Length = 441 Score = 51.6 bits (122), Expect = 2e-06 Identities = 28/109 (25%), Positives = 51/109 (46%) Frame = -3 Query: 597 AQYKSFFVAFSGLMEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFGV 418 ++Y S + L + LD +L H ++R Q+ + SV + MA AF Sbjct: 305 SRYASCLEYLASLKSNLLLDIHLHDHVDTLYDQIRKKALIQYTLPFVSVDLSRMADAFKT 364 Query: 417 TVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTIKQGD 271 +V +++EL I ++ +ID +L D+RNA +Q ++ G+ Sbjct: 365 SVSGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQKVLQMGN 413
>PSD12_MOUSE (Q9D8W5) 26S proteasome non-ATPase regulatory subunit 12 (26S| proteasome regulatory subunit p55) Length = 455 Score = 40.4 bits (93), Expect = 0.004 Identities = 20/77 (25%), Positives = 40/77 (51%) Frame = -3 Query: 462 YKSVTMEAMASAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTI 283 Y +TM+ MA ++VD + LS + + K+D++AGV+ RP + N Sbjct: 369 YTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGVINFQRPKDPNNLLNDWS 428 Query: 282 KQGDFLLNRIQKLSRVI 232 ++ + L++ + K + +I Sbjct: 429 QKLNSLMSLVNKTTHLI 445
>PSD12_PONPY (Q5RBI3) 26S proteasome non-ATPase regulatory subunit 12 (26S| proteasome regulatory subunit p55) Length = 455 Score = 40.0 bits (92), Expect = 0.005 Identities = 19/77 (24%), Positives = 40/77 (51%) Frame = -3 Query: 462 YKSVTMEAMASAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTI 283 Y +TM+ MA ++VD + LS + + K+D++AG++ RP + N Sbjct: 369 YTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWS 428 Query: 282 KQGDFLLNRIQKLSRVI 232 ++ + L++ + K + +I Sbjct: 429 QKLNSLMSLVNKTTHLI 445
>PSD12_HUMAN (O00232) 26S proteasome non-ATPase regulatory subunit 12 (26S| proteasome regulatory subunit p55) Length = 455 Score = 40.0 bits (92), Expect = 0.005 Identities = 19/77 (24%), Positives = 40/77 (51%) Frame = -3 Query: 462 YKSVTMEAMASAFGVTVDFIDQELSRFIAAGKLHCKIDKVAGVLETNRPDERNAFYQSTI 283 Y +TM+ MA ++VD + LS + + K+D++AG++ RP + N Sbjct: 369 YTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWS 428 Query: 282 KQGDFLLNRIQKLSRVI 232 ++ + L++ + K + +I Sbjct: 429 QKLNSLMSLVNKTTHLI 445
>CSN2_DROME (Q94899) COP9 signalosome complex subunit 2 (Signalosome subunit 2)| (Dch2) (Alien protein) Length = 444 Score = 37.7 bits (86), Expect = 0.026 Identities = 24/102 (23%), Positives = 50/102 (49%) Frame = -3 Query: 549 IKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFGVTVDFIDQELSRFIAAG 370 I D++++ H +R +RT V + + YK++ + +A+A + ++ L I Sbjct: 338 IMADQFIREHIEDLLRNIRTQVLIKLIRPYKNIAIPFIANALNIEPAEVESLLVSCILDD 397 Query: 369 KLHCKIDKVAGVLETNRPDERNAFYQSTIKQGDFLLNRIQKL 244 + +ID+V VL+ ++ + + Y + K N+IQ L Sbjct: 398 TIKGRIDQVNQVLQLDKINSSASRYNALEKWS----NQIQSL 435
>CSN1_SCHPO (O94308) COP9 signalosome complex subunit 1 (CSN complex subunit 1)| (SGN1) Length = 422 Score = 33.9 bits (76), Expect = 0.38 Identities = 19/71 (26%), Positives = 32/71 (45%) Frame = -3 Query: 555 EQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFGVTVDFIDQELSRFIA 376 + LD YL P +R +L Y ++ +A F + +FI++ L I Sbjct: 288 QDYSLDMYLAPQLTNLFSLIRERSLLDYLIPYSALPFSKIAVDFHIDENFIEKNLLEIIE 347 Query: 375 AGKLHCKIDKV 343 A KL+ K+D + Sbjct: 348 AKKLNGKVDSL 358
>MEGF9_HUMAN (Q9H1U4) Multiple epidermal growth factor-like domains 9 precursor| (EGF-like domain-containing protein 5) (Multiple EGF-like domain protein 5) Length = 600 Score = 33.1 bits (74), Expect = 0.65 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%) Frame = -2 Query: 538 PLSSTSFPLLHEGSAHCRLLTVFGVIQECDDGSYGF----CIWCDC 413 P + S P G C++ + + C DG YGF C+ C C Sbjct: 256 PHGALSIPCNSSGKCQCKVGVIGSICDRCQDGYYGFSKNGCLPCQC 301
>LAMA5_MOUSE (Q61001) Laminin alpha-5 chain precursor| Length = 3718 Score = 31.2 bits (69), Expect = 2.5 Identities = 15/32 (46%), Positives = 15/32 (46%), Gaps = 2/32 (6%) Frame = -2 Query: 502 GSAHCRLLTVFGVIQECDDGSYGF--CIWCDC 413 G HCR QEC G YGF CI C C Sbjct: 654 GLCHCRPGNTGATCQECSPGFYGFPSCIPCHC 685
>DPO3_LISMO (Q8Y7G1) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)| Length = 1444 Score = 30.0 bits (66), Expect = 5.5 Identities = 13/50 (26%), Positives = 28/50 (56%) Frame = -3 Query: 573 AFSGLMEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAF 424 A + +++ ++L R+L PHF+ + T ++ LE + +A A+A+ Sbjct: 533 AENAVVDTLELARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAY 582
>DPO3_LISMF (Q720A2) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)| Length = 1444 Score = 30.0 bits (66), Expect = 5.5 Identities = 13/50 (26%), Positives = 28/50 (56%) Frame = -3 Query: 573 AFSGLMEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAF 424 A + +++ ++L R+L PHF+ + T ++ LE + +A A+A+ Sbjct: 533 AENAVVDTLELARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAY 582
>DPO3_LISIN (Q92C34) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)| Length = 1444 Score = 30.0 bits (66), Expect = 5.5 Identities = 13/50 (26%), Positives = 28/50 (56%) Frame = -3 Query: 573 AFSGLMEQIKLDRYLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAF 424 A + +++ ++L R+L PHF+ + T ++ LE + +A A+A+ Sbjct: 533 AKNAVVDTLELARFLYPHFKNHRLNTLTKKFNIILEQHHRAVFDAEATAY 582
>SYC_STRMU (Q8DWA9) Cysteinyl-tRNA synthetase (EC 6.1.1.16) (Cysteine--tRNA| ligase) (CysRS) Length = 447 Score = 29.3 bits (64), Expect = 9.4 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Frame = -3 Query: 534 YLQPHFRYYMREVRTVVYSQFLESYKSVTMEAMASAFGVTVDFIDQELSRFIAAGKLHCK 355 Y QP + V V+++FLE +++ E +A G+TV F EL+++I +G Sbjct: 325 YEQP----FTATVDEAVFARFLEKFQAAMDEDFNTANGITVVF---ELAKWINSGHYDQT 377 Query: 354 I-DKVAGVLE 328 + DK A +L+ Sbjct: 378 VKDKFAEILQ 387
>AIM1_HUMAN (Q9Y4K1) Absent in melanoma 1 protein| Length = 1723 Score = 29.3 bits (64), Expect = 9.4 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 3/25 (12%) Frame = -1 Query: 215 CSCWSSDPA---KVVPGCWIYFS*P 150 CS WS P KVV GCWI + P Sbjct: 1046 CSSWSLSPVILIKVVRGCWILYEQP 1070 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,355,722 Number of Sequences: 219361 Number of extensions: 1686480 Number of successful extensions: 4229 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 4142 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4229 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
