ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags11p08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ417517.1|OSA417517 Oryza sativa partial mRNA for H+-transp... 96 4e-17
2dbj|AK072694.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 4e-17
3gb|AC131968.1| Oryza sativa (japonica cultivar-group) chromosome... 94 1e-16
4gb|AC021892.16| Genomic sequence for Oryza sativa, Nipponbare st... 94 1e-16
5dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 94 1e-16
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 94 1e-16
7ref|NM_195647.1| Oryza sativa (japonica cultivar-group) putative... 80 2e-12
8gb|AF023858.1|AF023858 Solanum tuberosum ATP synthase gamma chai... 50 0.002
9ref|NM_128864.2| Arabidopsis thaliana hydrogen-transporting ATP ... 44 0.12
10gb|BT000409.1| Arabidopsis thaliana mitochondrial F1-ATPase, gam... 44 0.12
11gb|AY136289.1| Arabidopsis thaliana mitochondrial F1-ATPase, gam... 44 0.12
12gb|AY102152.1| Arabidopsis thaliana At2g33040/F25I18.22 mRNA, co... 44 0.12
13gb|AC003033.3| Arabidopsis thaliana chromosome 2 BAC T21L14 geno... 44 0.12
14gb|AC002334.3| Arabidopsis thaliana chromosome 2 clone F25I18 ma... 44 0.12
15gb|AY062627.1| Arabidopsis thaliana mitochondrial F1-ATPase, gam... 44 0.12
16gb|AY039513.1| Arabidopsis thaliana At2g33040/F25I18.22 mRNA, co... 44 0.12
17emb|BX820526.1|CNS0A9P1 Arabidopsis thaliana Full-length cDNA Co... 44 0.12
18emb|BX819675.1|CNS0A9BS Arabidopsis thaliana Full-length cDNA Co... 44 0.12
19gb|AY086685.1| Arabidopsis thaliana clone 26812 mRNA, complete s... 44 0.12
20dbj|D88374.1| Arabidopsis thaliana mRNA for gamma subunit of mit... 44 0.12
21emb|AL157363.9| Human DNA sequence from clone RP11-268K3 on chro... 42 0.47
22gb|AC022348.2|AC022348 Drosophila melanogaster, chromosome X, re... 42 0.47
23dbj|AB194067.1| Ipomoea nil mRNA for mitochondrial F1-ATPase gam... 42 0.47
24gb|AE003508.4| Drosophila melanogaster chromosome X, section 60 ... 42 0.47
25ref|NM_105208.1| Arabidopsis thaliana CYP96A3; heme binding / ir... 40 1.9
26ref|XM_585301.2| PREDICTED: Bos taurus similar to Ubiquitin-prot... 40 1.9
27gb|AC126032.4| Mus musculus BAC clone RP24-94B12 from chromosome... 40 1.9
28dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113 40 1.9
29gb|AF528573.1| Arabidopsis thaliana ecotype Lisse-2 putative cyt... 40 1.9
30gb|AF528572.1| Arabidopsis thaliana ecotype Ita-0 putative cytoc... 40 1.9
31gb|AF528571.1| Arabidopsis thaliana ecotype Gr-3 putative cytoch... 40 1.9
32gb|AF528570.1| Arabidopsis thaliana ecotype Chi-1 putative cytoc... 40 1.9
33gb|AF528569.1| Arabidopsis thaliana ecotype Bs-1 putative cytoch... 40 1.9
34gb|AF528568.1| Arabidopsis thaliana ecotype Bla-1 putative cytoc... 40 1.9
35gb|AF528567.1| Arabidopsis thaliana ecotype Kas-1 putative cytoc... 40 1.9
36gb|AF528566.1| Arabidopsis thaliana ecotype Cvi-0 putative cytoc... 40 1.9
37gb|AC004512.2|T8F5 Arabidopsis thaliana chromosome 1 BAC T8F5 se... 40 1.9
38gb|AF087753.1|AF087753 Oryctolagus cuniculus clone Lb 80-H immun... 40 1.9
39gb|AC026911.15| Mus musculus chromosome 1, clone RP23-190F21, co... 40 1.9
40gb|AC157593.4| Mus musculus BAC clone RP23-254B18 from chromosom... 38 7.4
41gb|AC141426.3| Mus musculus BAC clone RP23-280I14 from chromosom... 38 7.4
42gb|AC006455.2| Homo sapiens PAC clone RP5-905H7 from 7, complete... 38 7.4
43emb|AL162455.14| Human DNA sequence from clone RP11-62D23 on chr... 38 7.4
44gb|AC134618.2| Homo sapiens BAC clone RP11-1241A4 from 7, comple... 38 7.4
45gb|AC121337.7| Homo sapiens 12 BAC RP11-96H19 (Roswell Park Canc... 38 7.4
46gb|AC009520.16| Homo sapiens 3 BAC RP11-392H18 (Roswell Park Can... 38 7.4
47gb|AC073188.10| Homo sapiens BAC clone RP11-73B2 from 7, complet... 38 7.4
48gb|AC006457.4| Homo sapiens PAC clone RP5-1193P9 from 7p11.2-q11... 38 7.4
49dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.4
50gb|AY294937.1| Petromyscus monticularis recombination activating... 38 7.4
51gb|AC092929.5| Homo sapiens 3 BAC RP11-569L16 (Roswell Park Canc... 38 7.4
52gb|AC134619.2| Homo sapiens BAC clone RP11-1367K15 from 7, compl... 38 7.4
53dbj|AP003700.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.4
54dbj|AP000929.6| Homo sapiens genomic DNA, chromosome 11 clone:RP... 38 7.4
55dbj|AP000848.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 38 7.4 
>emb|AJ417517.1|OSA417517 Oryza sativa partial mRNA for H+-transporting ATP synthase (xd1
           gene)
          Length = 599

 Score = 95.6 bits (48), Expect = 4e-17
 Identities = 75/84 (89%)
 Strand = Plus / Minus

                                                                       
Query: 41  agtttcatcatcatccctcaagagcagaggcaccggatatgatctcagtgagctccgtag 100
           ||||||||||| |||||||||| ||||| || || || || |||||| ||||||| ||||
Sbjct: 499 agtttcatcattatccctcaagggcagaagcgccagagataatctcaatgagctctgtag 440

                                   
Query: 101 tgatagatgcttgacgtgtcctgt 124
           ||||||||||||||||||||||||
Sbjct: 439 tgatagatgcttgacgtgtcctgt 416
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>dbj|AK072694.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023135E20, full
            insert sequence
          Length = 1413

 Score = 95.6 bits (48), Expect = 4e-17
 Identities = 75/84 (89%)
 Strand = Plus / Minus

                                                                        
Query: 41   agtttcatcatcatccctcaagagcagaggcaccggatatgatctcagtgagctccgtag 100
            ||||||||||| |||||||||| ||||| || || || || |||||| ||||||| ||||
Sbjct: 1049 agtttcatcattatccctcaagggcagaagcgccagagataatctcaatgagctctgtag 990

                                    
Query: 101  tgatagatgcttgacgtgtcctgt 124
            ||||||||||||||||||||||||
Sbjct: 989  tgatagatgcttgacgtgtcctgt 966
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>gb|AC131968.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNAa0053D03, complete sequence
          Length = 150496

 Score = 93.7 bits (47), Expect = 1e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                         
Query: 41    agtttcatcatcatccctcaagagcagaggcaccggatatgatctcagtgagctccgtag 100
             ||||||||||| |||||||||| ||||| || || || || |||||| ||||||| ||||
Sbjct: 24040 agtttcatcattatccctcaagggcagaagcgccagagataatctcaatgagctctgtag 23981

                                    
Query: 101   tgatagatgcttgacgtgtcctg 123
             |||||||||||||||||||||||
Sbjct: 23980 tgatagatgcttgacgtgtcctg 23958
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>gb|AC021892.16| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0053D03, from chromosome 10, complete sequence
          Length = 199113

 Score = 93.7 bits (47), Expect = 1e-16
 Identities = 74/83 (89%)
 Strand = Plus / Plus

                                                                         
Query: 41    agtttcatcatcatccctcaagagcagaggcaccggatatgatctcagtgagctccgtag 100
             ||||||||||| |||||||||| ||||| || || || || |||||| ||||||| ||||
Sbjct: 35961 agtttcatcattatccctcaagggcagaagcgccagagataatctcaatgagctctgtag 36020

                                    
Query: 101   tgatagatgcttgacgtgtcctg 123
             |||||||||||||||||||||||
Sbjct: 36021 tgatagatgcttgacgtgtcctg 36043
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 93.7 bits (47), Expect = 1e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                           
Query: 41      agtttcatcatcatccctcaagagcagaggcaccggatatgatctcagtgagctccgtag 100
               ||||||||||| |||||||||| ||||| || || || || |||||| ||||||| ||||
Sbjct: 8220518 agtttcatcattatccctcaagggcagaagcgccagagataatctcaatgagctctgtag 8220459

                                      
Query: 101     tgatagatgcttgacgtgtcctg 123
               |||||||||||||||||||||||
Sbjct: 8220458 tgatagatgcttgacgtgtcctg 8220436
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 93.7 bits (47), Expect = 1e-16
 Identities = 74/83 (89%)
 Strand = Plus / Minus

                                                                           
Query: 41      agtttcatcatcatccctcaagagcagaggcaccggatatgatctcagtgagctccgtag 100
               ||||||||||| |||||||||| ||||| || || || || |||||| ||||||| ||||
Sbjct: 8225617 agtttcatcattatccctcaagggcagaagcgccagagataatctcaatgagctctgtag 8225558

                                      
Query: 101     tgatagatgcttgacgtgtcctg 123
               |||||||||||||||||||||||
Sbjct: 8225557 tgatagatgcttgacgtgtcctg 8225535
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>ref|NM_195647.1| Oryza sativa (japonica cultivar-group) putative ATP synthase gamma
            chain, mitochondrial precursor (OSJNBa0053D03.10), mRNA
          Length = 1107

 Score = 79.8 bits (40), Expect = 2e-12
 Identities = 64/72 (88%)
 Strand = Plus / Minus

                                                                        
Query: 53   atccctcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgctt 112
            |||||||||| ||||| || || || || |||||| ||||||| ||||||||||||||||
Sbjct: 1105 atccctcaagggcagaagcgccagagataatctcaatgagctctgtagtgatagatgctt 1046

                        
Query: 113  gacgtgtcctgt 124
            ||||||||||||
Sbjct: 1045 gacgtgtcctgt 1034
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>gb|AF023858.1|AF023858 Solanum tuberosum ATP synthase gamma chain mRNA, nuclear gene
           encoding mitochondrial protein, partial cds
          Length = 718

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 76  gatatgatctcagtgagctccgtagtgatagatgcttgacg 116
           |||||||||||| | ||||| || |||||||||||||||||
Sbjct: 475 gatatgatctcaatcagctctgtggtgatagatgcttgacg 435
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>ref|NM_128864.2| Arabidopsis thaliana hydrogen-transporting ATP synthase, rotational
            mechanism / hydrogen-transporting ATPase, rotational
            mechanism AT2G33040 mRNA, complete cds
          Length = 1309

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 74/90 (82%), Gaps = 1/90 (1%)
 Strand = Plus / Minus

                                                                        
Query: 58   tcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttgacgt 117
            ||||||||||| || || || || |||||| | ||||| || || ||||| |||||||| 
Sbjct: 1098 tcaagagcagaagctccagagataatctcaataagctctgttgtaatagaagcttgacga 1039

                                          
Query: 118  gtcctgtctgtatgtcagtgtaagacggtc 147
            ||||||| ||||||| || || ||||||||
Sbjct: 1038 gtcctgt-tgtatgtgagggtgagacggtc 1010
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>gb|BT000409.1| Arabidopsis thaliana mitochondrial F1-ATPase, gamma subunit
           (ATP3_ARATH) (At2g33040) mRNA, complete cds
          Length = 1092

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 74/90 (82%), Gaps = 1/90 (1%)
 Strand = Plus / Minus

                                                                       
Query: 58  tcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttgacgt 117
           ||||||||||| || || || || |||||| | ||||| || || ||||| |||||||| 
Sbjct: 965 tcaagagcagaagctccagagataatctcaataagctctgttgtaatagaagcttgacga 906

                                         
Query: 118 gtcctgtctgtatgtcagtgtaagacggtc 147
           ||||||| ||||||| || || ||||||||
Sbjct: 905 gtcctgt-tgtatgtgagggtgagacggtc 877
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>gb|AY136289.1| Arabidopsis thaliana mitochondrial F1-ATPase, gamma subunit
            (ATP3_ARATH) (At2g33040) mRNA, complete cds
          Length = 1265

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 74/90 (82%), Gaps = 1/90 (1%)
 Strand = Plus / Minus

                                                                        
Query: 58   tcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttgacgt 117
            ||||||||||| || || || || |||||| | ||||| || || ||||| |||||||| 
Sbjct: 1053 tcaagagcagaagctccagagataatctcaataagctctgttgtaatagaagcttgacga 994

                                          
Query: 118  gtcctgtctgtatgtcagtgtaagacggtc 147
            ||||||| ||||||| || || ||||||||
Sbjct: 993  gtcctgt-tgtatgtgagggtgagacggtc 965
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>gb|AY102152.1| Arabidopsis thaliana At2g33040/F25I18.22 mRNA, complete cds
          Length = 978

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 74/90 (82%), Gaps = 1/90 (1%)
 Strand = Plus / Minus

                                                                       
Query: 58  tcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttgacgt 117
           ||||||||||| || || || || |||||| | ||||| || || ||||| |||||||| 
Sbjct: 965 tcaagagcagaagctccagagataatctcaataagctctgttgtaatagaagcttgacga 906

                                         
Query: 118 gtcctgtctgtatgtcagtgtaagacggtc 147
           ||||||| ||||||| || || ||||||||
Sbjct: 905 gtcctgt-tgtatgtgagggtgagacggtc 877
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>gb|AC003033.3| Arabidopsis thaliana chromosome 2 BAC T21L14 genomic sequence,
            complete sequence
          Length = 96801

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 74/90 (82%), Gaps = 1/90 (1%)
 Strand = Plus / Minus

                                                                        
Query: 58   tcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttgacgt 117
            ||||||||||| || || || || |||||| | ||||| || || ||||| |||||||| 
Sbjct: 4494 tcaagagcagaagctccagagataatctcaataagctctgttgtaatagaagcttgacga 4435

                                          
Query: 118  gtcctgtctgtatgtcagtgtaagacggtc 147
            ||||||| ||||||| || || ||||||||
Sbjct: 4434 gtcctgt-tgtatgtgagggtgagacggtc 4406
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>gb|AC002334.3| Arabidopsis thaliana chromosome 2 clone F25I18 map TEn5, complete
             sequence
          Length = 93158

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 74/90 (82%), Gaps = 1/90 (1%)
 Strand = Plus / Minus

                                                                         
Query: 58    tcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttgacgt 117
             ||||||||||| || || || || |||||| | ||||| || || ||||| |||||||| 
Sbjct: 81469 tcaagagcagaagctccagagataatctcaataagctctgttgtaatagaagcttgacga 81410

                                           
Query: 118   gtcctgtctgtatgtcagtgtaagacggtc 147
             ||||||| ||||||| || || ||||||||
Sbjct: 81409 gtcctgt-tgtatgtgagggtgagacggtc 81381
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>gb|AY062627.1| Arabidopsis thaliana mitochondrial F1-ATPase, gamma subunit
            (ATP3_ARATH) (At2g33040; F25I18.22) mRNA, complete cds
          Length = 1360

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 74/90 (82%), Gaps = 1/90 (1%)
 Strand = Plus / Minus

                                                                        
Query: 58   tcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttgacgt 117
            ||||||||||| || || || || |||||| | ||||| || || ||||| |||||||| 
Sbjct: 1064 tcaagagcagaagctccagagataatctcaataagctctgttgtaatagaagcttgacga 1005

                                          
Query: 118  gtcctgtctgtatgtcagtgtaagacggtc 147
            ||||||| ||||||| || || ||||||||
Sbjct: 1004 gtcctgt-tgtatgtgagggtgagacggtc 976
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>gb|AY039513.1| Arabidopsis thaliana At2g33040/F25I18.22 mRNA, complete cds
          Length = 1238

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 74/90 (82%), Gaps = 1/90 (1%)
 Strand = Plus / Minus

                                                                        
Query: 58   tcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttgacgt 117
            ||||||||||| || || || || |||||| | ||||| || || ||||| |||||||| 
Sbjct: 1051 tcaagagcagaagctccagagataatctcaataagctctgttgtaatagaagcttgacga 992

                                          
Query: 118  gtcctgtctgtatgtcagtgtaagacggtc 147
            ||||||| ||||||| || || ||||||||
Sbjct: 991  gtcctgt-tgtatgtgagggtgagacggtc 963
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>emb|BX820526.1|CNS0A9P1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH44ZD12 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1327

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 74/90 (82%), Gaps = 1/90 (1%)
 Strand = Plus / Minus

                                                                        
Query: 58   tcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttgacgt 117
            ||||||||||| || || || || || ||| ||||||| || |||||||| |||||||| 
Sbjct: 1080 tcaagagcagaagctccagagataatgtcaatgagctctgttgtgatagaagcttgacga 1021

                                          
Query: 118  gtcctgtctgtatgtcagtgtaagacggtc 147
            || |||| ||||||| || || ||||||||
Sbjct: 1020 gttctgt-tgtatgtgagggtgagacggtc 992
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>emb|BX819675.1|CNS0A9BS Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS16ZE03 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1205

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 74/90 (82%), Gaps = 1/90 (1%)
 Strand = Plus / Minus

                                                                        
Query: 58   tcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttgacgt 117
            ||||||||||| || || || || |||||| | ||||| || || ||||| |||||||| 
Sbjct: 1068 tcaagagcagaagctccagagataatctcaataagctctgttgtaatagaagcttgacga 1009

                                          
Query: 118  gtcctgtctgtatgtcagtgtaagacggtc 147
            ||||||| ||||||| || || ||||||||
Sbjct: 1008 gtcctgt-tgtatgtgagggtgagacggtc 980
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>gb|AY086685.1| Arabidopsis thaliana clone 26812 mRNA, complete sequence
          Length = 1310

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 74/90 (82%), Gaps = 1/90 (1%)
 Strand = Plus / Minus

                                                                        
Query: 58   tcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttgacgt 117
            ||||||||||| || || || || |||||| | ||||| || || ||||| |||||||| 
Sbjct: 1098 tcaagagcagaagctccagagataatctcaataagctctgttgtaatagaagcttgacga 1039

                                          
Query: 118  gtcctgtctgtatgtcagtgtaagacggtc 147
            ||||||| ||||||| || || ||||||||
Sbjct: 1038 gtcctgt-tgtatgtgagggtgagacggtc 1010
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>dbj|D88374.1| Arabidopsis thaliana mRNA for gamma subunit of mitochondrial
            F1-ATPase, complete cds
          Length = 1267

 Score = 44.1 bits (22), Expect = 0.12
 Identities = 74/90 (82%), Gaps = 1/90 (1%)
 Strand = Plus / Minus

                                                                        
Query: 58   tcaagagcagaggcaccggatatgatctcagtgagctccgtagtgatagatgcttgacgt 117
            ||||||||||| || || || || |||||| | ||||| || || ||||| |||||||| 
Sbjct: 1039 tcaagagcagaagctccagagataatctcaataagctctgttgtaatagaagcttgacga 980

                                          
Query: 118  gtcctgtctgtatgtcagtgtaagacggtc 147
            ||||||| ||||||| || || ||||||||
Sbjct: 979  gtcctgt-tgtatgtgagggtgagacggtc 951
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>emb|AL157363.9| Human DNA sequence from clone RP11-268K3 on chromosome 13 Contains the
             3' end of the GPC5 gene for glypican 5, complete sequence
          Length = 164732

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 120   cctgtctgtatgtcagtgtaa 140
             |||||||||||||||||||||
Sbjct: 22289 cctgtctgtatgtcagtgtaa 22269
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>gb|AC022348.2|AC022348 Drosophila melanogaster, chromosome X, region 17E-18A, BAC clone
             BACR32F24, complete sequence
          Length = 162307

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 24    taaagacgatggtgtagagtt 44
             |||||||||||||||||||||
Sbjct: 60105 taaagacgatggtgtagagtt 60125
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>dbj|AB194067.1| Ipomoea nil mRNA for mitochondrial F1-ATPase gamma subunit, complete
            cds
          Length = 1412

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 76   gatatgatctcagtgagctccgtagtgatagatgcttgacg 116
            ||||||||||| || || || || |||||||||||||||||
Sbjct: 1033 gatatgatctctgtcagttctgtggtgatagatgcttgacg 993
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>gb|AE003508.4| Drosophila melanogaster chromosome X, section 60 of 74 of the complete
             sequence
          Length = 290619

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 24    taaagacgatggtgtagagtt 44
             |||||||||||||||||||||
Sbjct: 96699 taaagacgatggtgtagagtt 96719
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>ref|NM_105208.1| Arabidopsis thaliana CYP96A3; heme binding / iron ion binding /
           monooxygenase/ oxygen binding AT1G65340 (CYP96A3) mRNA,
           complete cds
          Length = 1512

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 48  tcatcatccctcaagagcagaggc 71
           ||||||||||||||||| ||||||
Sbjct: 807 tcatcatccctcaagaggagaggc 830
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>ref|XM_585301.2| PREDICTED: Bos taurus similar to Ubiquitin-protein ligase E3C
            (LOC508513), mRNA
          Length = 4685

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 8    cattggaacatacaaataaa 27
            ||||||||||||||||||||
Sbjct: 4643 cattggaacatacaaataaa 4624
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>gb|AC126032.4| Mus musculus BAC clone RP24-94B12 from chromosome 1, complete sequence
          Length = 207475

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    catcatccctcaagagcaga 68
             ||||||||||||||||||||
Sbjct: 71753 catcatccctcaagagcaga 71772
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>dbj|AP007166.1| Aspergillus oryzae RIB40 genomic DNA, SC113
          Length = 1841713

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     ttggaacatacaaataaaga 29
              ||||||||||||||||||||
Sbjct: 917496 ttggaacatacaaataaaga 917477
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>gb|AF528573.1| Arabidopsis thaliana ecotype Lisse-2 putative cytochrome P450
           (At1g65340) gene, partial cds
          Length = 939

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 48  tcatcatccctcaagagcagaggc 71
           ||||||||||||||||| ||||||
Sbjct: 589 tcatcatccctcaagaggagaggc 612
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>gb|AF528572.1| Arabidopsis thaliana ecotype Ita-0 putative cytochrome P450
           (At1g65340) gene, partial cds
          Length = 939

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 48  tcatcatccctcaagagcagaggc 71
           ||||||||||||||||| ||||||
Sbjct: 589 tcatcatccctcaagaggagaggc 612
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>gb|AF528571.1| Arabidopsis thaliana ecotype Gr-3 putative cytochrome P450
           (At1g65340) gene, partial cds
          Length = 939

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 48  tcatcatccctcaagagcagaggc 71
           ||||||||||||||||| ||||||
Sbjct: 589 tcatcatccctcaagaggagaggc 612
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>gb|AF528570.1| Arabidopsis thaliana ecotype Chi-1 putative cytochrome P450
           (At1g65340) gene, partial cds
          Length = 939

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 48  tcatcatccctcaagagcagaggc 71
           ||||||||||||||||| ||||||
Sbjct: 589 tcatcatccctcaagaggagaggc 612
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>gb|AF528569.1| Arabidopsis thaliana ecotype Bs-1 putative cytochrome P450
           (At1g65340) gene, partial cds
          Length = 939

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 48  tcatcatccctcaagagcagaggc 71
           ||||||||||||||||| ||||||
Sbjct: 589 tcatcatccctcaagaggagaggc 612
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>gb|AF528568.1| Arabidopsis thaliana ecotype Bla-1 putative cytochrome P450
           (At1g65340) gene, partial cds
          Length = 939

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 48  tcatcatccctcaagagcagaggc 71
           ||||||||||||||||| ||||||
Sbjct: 589 tcatcatccctcaagaggagaggc 612
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>gb|AF528567.1| Arabidopsis thaliana ecotype Kas-1 putative cytochrome P450
           (At1g65340) gene, partial cds
          Length = 939

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 48  tcatcatccctcaagagcagaggc 71
           ||||||||||||||||| ||||||
Sbjct: 589 tcatcatccctcaagaggagaggc 612
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>gb|AF528566.1| Arabidopsis thaliana ecotype Cvi-0 putative cytochrome P450
           (At1g65340) gene, partial cds
          Length = 939

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 48  tcatcatccctcaagagcagaggc 71
           ||||||||||||||||| ||||||
Sbjct: 589 tcatcatccctcaagaggagaggc 612
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>gb|AC004512.2|T8F5 Arabidopsis thaliana chromosome 1 BAC T8F5 sequence, complete sequence
          Length = 88292

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 48    tcatcatccctcaagagcagaggc 71
             ||||||||||||||||| ||||||
Sbjct: 34902 tcatcatccctcaagaggagaggc 34879
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>gb|AF087753.1|AF087753 Oryctolagus cuniculus clone Lb 80-H immunoglobulin heavy chain
           V-D-J region (IgH) gene, partial cds
          Length = 346

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   ttcattggaacatacaaata 25
           ||||||||||||||||||||
Sbjct: 320 ttcattggaacatacaaata 301
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>gb|AC026911.15| Mus musculus chromosome 1, clone RP23-190F21, complete sequence
          Length = 239743

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     catcatccctcaagagcaga 68
              ||||||||||||||||||||
Sbjct: 195123 catcatccctcaagagcaga 195142
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>gb|AC157593.4| Mus musculus BAC clone RP23-254B18 from chromosome 16, complete
             sequence
          Length = 204167

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 9     attggaacatacaaataaa 27
             |||||||||||||||||||
Sbjct: 46946 attggaacatacaaataaa 46928
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>gb|AC141426.3| Mus musculus BAC clone RP23-280I14 from chromosome 12, complete sequence
          Length = 227835

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 2      agccttcattggaacatacaaat 24
              ||||||||||||||||| |||||
Sbjct: 182855 agccttcattggaacatgcaaat 182877
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>gb|AC006455.2| Homo sapiens PAC clone RP5-905H7 from 7, complete sequence
          Length = 139384

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 5     cttcattggaacatacaaataaa 27
             |||||||| ||||||||||||||
Sbjct: 91771 cttcattgaaacatacaaataaa 91749
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>emb|AL162455.14| Human DNA sequence from clone RP11-62D23 on chromosome 13 Contains part
             of the GPC6 gene for glypican 6 and a novel gene, complete
             sequence
          Length = 173736

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 40    gagtttcatcatcatccct 58
             |||||||||||||||||||
Sbjct: 53715 gagtttcatcatcatccct 53733
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>gb|AC134618.2| Homo sapiens BAC clone RP11-1241A4 from 7, complete sequence
          Length = 213481

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 5      cttcattggaacatacaaataaa 27
              |||||||| ||||||||||||||
Sbjct: 100549 cttcattgaaacatacaaataaa 100571
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>gb|AC121337.7| Homo sapiens 12 BAC RP11-96H19 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 110110

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 55    ccctcaagagcagaggcac 73
             |||||||||||||||||||
Sbjct: 86472 ccctcaagagcagaggcac 86490
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>gb|AC009520.16| Homo sapiens 3 BAC RP11-392H18 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 161517

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 9     attggaacatacaaataaa 27
             |||||||||||||||||||
Sbjct: 21304 attggaacatacaaataaa 21286
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>gb|AC073188.10| Homo sapiens BAC clone RP11-73B2 from 7, complete sequence
          Length = 65128

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 5     cttcattggaacatacaaataaa 27
             |||||||| ||||||||||||||
Sbjct: 63463 cttcattgaaacatacaaataaa 63485
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>gb|AC006457.4| Homo sapiens PAC clone RP5-1193P9 from 7p11.2-q11.2, complete
           sequence
          Length = 134187

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 5   cttcattggaacatacaaataaa 27
           |||||||| ||||||||||||||
Sbjct: 334 cttcattgaaacatacaaataaa 356
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 8        cattggaacatacaaataa 26
                |||||||||||||||||||
Sbjct: 25172965 cattggaacatacaaataa 25172983
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>gb|AY294937.1| Petromyscus monticularis recombination activating gene 1 (RAG1) gene,
            partial cds
          Length = 1225

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 65   cagaggcaccggatatgat 83
            |||||||||||||||||||
Sbjct: 1099 cagaggcaccggatatgat 1117
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>gb|AC092929.5| Homo sapiens 3 BAC RP11-569L16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 120070

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 47    atcatcatccctcaagagc 65
             |||||||||||||||||||
Sbjct: 12467 atcatcatccctcaagagc 12449
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>gb|AC134619.2| Homo sapiens BAC clone RP11-1367K15 from 7, complete sequence
          Length = 225116

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 5      cttcattggaacatacaaataaa 27
              |||||||| ||||||||||||||
Sbjct: 130526 cttcattgaaacatacaaataaa 130548



 Score = 38.2 bits (19), Expect = 7.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 5     cttcattggaacatacaaataaa 27
             |||||||| ||||||||||||||
Sbjct: 21771 cttcattgaaacatacaaataaa 21749
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>dbj|AP003700.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1003_H02
          Length = 124043

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 8     cattggaacatacaaataa 26
             |||||||||||||||||||
Sbjct: 93452 cattggaacatacaaataa 93470
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>dbj|AP000929.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-778B17, complete
             sequence
          Length = 197195

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 2     agccttcattggaacatac 20
             |||||||||||||||||||
Sbjct: 13917 agccttcattggaacatac 13935
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>dbj|AP000848.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-775D16, complete
              sequence
          Length = 186965

 Score = 38.2 bits (19), Expect = 7.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 2      agccttcattggaacatac 20
              |||||||||||||||||||
Sbjct: 170041 agccttcattggaacatac 170059


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,447,839
Number of Sequences: 3902068
Number of extensions: 1447839
Number of successful extensions: 92838
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92700
Number of HSP's gapped (non-prelim): 138
length of query: 153
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 132
effective length of database: 17,151,101,840
effective search space: 2263945442880
effective search space used: 2263945442880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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