ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags12e13 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB081950.1| Oryza sativa (japonica cultivar-group) OsPNH1 mRNA for ZLL/PNH homologous protein, complete cds Length = 3548 Score = 440 bits (222), Expect = e-120 Identities = 348/388 (89%), Gaps = 4/388 (1%) Strand = Plus / Minus Query: 205 tcaacagtagaacatcaccctcttcaccttctctttcacagcgggcaaaggcttcacgga 264 ||||||||||||||||||||||||||||||||| ||||| || ||||| |||||||| || Sbjct: 3260 tcaacagtagaacatcaccctcttcaccttctccttcaccgcaggcaatggcttcaccga 3201 Query: 265 ggtaccattcgtcccactggagctcttcgacgtg---tggttctccgacagctccggctc 321 ||| || ||||||||| |||||||||||||||| ||||||||||||| ||| ||||| Sbjct: 3200 ggttccgttcgtcccagtggagctcttcgacgtcgtctggttctccgacatctctggctc 3141 Query: 322 catgtagaaccgcgcccggaatgcagccagatgcgcgtaatatgcaggtgggacgacgga 381 ||||||||||||||| || || |||||||||||||| || ||||||||||| || || || Sbjct: 3140 catgtagaaccgcgctcgaaacgcagccagatgcgcatagtatgcaggtggaacaacaga 3081 Query: 382 aacagagcgcgtgcaccgtgcgtaagtgtagcaaaggttgtttgtcaacgtctgcatttc 441 ||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct: 3080 aacagagcgtgtgcaccgtgcataagtgtagcaaaggttgtttgtcaatgtctgcatttc 3021 Query: 442 gtctgctgagaagttgttctcatcccagaggacatggtagtgagctggcctacttgtacc 501 |||||| | ||| |||||||||||||| ||||| ||||||||||||||||||||||| || Sbjct: 3020 gtctgcagtgaaattgttctcatcccaaaggacgtggtagtgagctggcctacttgttcc 2961 Query: 502 ctgggattccagcgtgactacagaggtagaaatcaaactccgttgggtggcatatcttcg 561 || | |||||||| || ||||||||||||||||||||||| | ||||||||| ||||| | Sbjct: 2960 ct-gaattccagcatggctacagaggtagaaatcaaactctgatgggtggcagatctttg 2902 Query: 562 aatcaacaacagttccaggtaaaatgtt 589 ||||||||||||||||||| |||||||| Sbjct: 2901 aatcaacaacagttccaggcaaaatgtt 2874
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 184 bits (93), Expect = 2e-43 Identities = 152/171 (88%), Gaps = 3/171 (1%) Strand = Plus / Minus Query: 205 tcaacagtagaacatcaccctcttcaccttctctttcacagcgggcaaaggcttcacgga 264 ||||||||||||||||||||||||||||||||| ||||| || ||||| |||||||| || Sbjct: 23163276 tcaacagtagaacatcaccctcttcaccttctccttcaccgcaggcaatggcttcaccga 23163217 Query: 265 ggtaccattcgtcccactggagctcttcga---cgtgtggttctccgacagctccggctc 321 ||| || ||||||||| ||||||||||||| ||| ||||||||||||| ||| ||||| Sbjct: 23163216 ggttccgttcgtcccagtggagctcttcgacgtcgtctggttctccgacatctctggctc 23163157 Query: 322 catgtagaaccgcgcccggaatgcagccagatgcgcgtaatatgcaggtgg 372 ||||||||||||||| || || |||||||||||||| || ||||||||||| Sbjct: 23163156 catgtagaaccgcgctcgaaacgcagccagatgcgcatagtatgcaggtgg 23163106 Score = 143 bits (72), Expect = 7e-31 Identities = 96/104 (92%) Strand = Plus / Minus Query: 402 cgtaagtgtagcaaaggttgtttgtcaacgtctgcatttcgtctgctgagaagttgttct 461 |||| ||||||||||||||||||||||| ||||||||||||||||| | ||| ||||||| Sbjct: 23162863 cgtacgtgtagcaaaggttgtttgtcaatgtctgcatttcgtctgcagtgaaattgttct 23162804 Query: 462 catcccagaggacatggtagtgagctggcctacttgtaccctgg 505 ||||||| ||||| ||||||||||||||||||||||| |||||| Sbjct: 23162803 catcccaaaggacgtggtagtgagctggcctacttgttccctgg 23162760 Score = 93.7 bits (47), Expect = 6e-16 Identities = 65/71 (91%) Strand = Plus / Minus Query: 507 attccagcgtgactacagaggtagaaatcaaactccgttgggtggcatatcttcgaatca 566 |||||||| || ||||||||||||||||||||||| | ||||||||| ||||| |||||| Sbjct: 23162192 attccagcatggctacagaggtagaaatcaaactctgatgggtggcagatctttgaatca 23162133 Query: 567 acaacagttcc 577 ||||||||||| Sbjct: 23162132 acaacagttcc 23162122 Score = 44.1 bits (22), Expect = 0.51 Identities = 40/46 (86%) Strand = Plus / Minus Query: 529 agaaatcaaactccgttgggtggcatatcttcgaatcaacaacagt 574 |||| ||||||||||| || ||||| ||||| || ||||||||||| Sbjct: 30560525 agaagtcaaactccgtaggatggcaaatcttggagtcaacaacagt 30560480
>dbj|AP004236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417D05 Length = 165752 Score = 184 bits (93), Expect = 2e-43 Identities = 152/171 (88%), Gaps = 3/171 (1%) Strand = Plus / Minus Query: 205 tcaacagtagaacatcaccctcttcaccttctctttcacagcgggcaaaggcttcacgga 264 ||||||||||||||||||||||||||||||||| ||||| || ||||| |||||||| || Sbjct: 113924 tcaacagtagaacatcaccctcttcaccttctccttcaccgcaggcaatggcttcaccga 113865 Query: 265 ggtaccattcgtcccactggagctcttcga---cgtgtggttctccgacagctccggctc 321 ||| || ||||||||| ||||||||||||| ||| ||||||||||||| ||| ||||| Sbjct: 113864 ggttccgttcgtcccagtggagctcttcgacgtcgtctggttctccgacatctctggctc 113805 Query: 322 catgtagaaccgcgcccggaatgcagccagatgcgcgtaatatgcaggtgg 372 ||||||||||||||| || || |||||||||||||| || ||||||||||| Sbjct: 113804 catgtagaaccgcgctcgaaacgcagccagatgcgcatagtatgcaggtgg 113754 Score = 143 bits (72), Expect = 7e-31 Identities = 96/104 (92%) Strand = Plus / Minus Query: 402 cgtaagtgtagcaaaggttgtttgtcaacgtctgcatttcgtctgctgagaagttgttct 461 |||| ||||||||||||||||||||||| ||||||||||||||||| | ||| ||||||| Sbjct: 113511 cgtacgtgtagcaaaggttgtttgtcaatgtctgcatttcgtctgcagtgaaattgttct 113452 Query: 462 catcccagaggacatggtagtgagctggcctacttgtaccctgg 505 ||||||| ||||| ||||||||||||||||||||||| |||||| Sbjct: 113451 catcccaaaggacgtggtagtgagctggcctacttgttccctgg 113408 Score = 93.7 bits (47), Expect = 6e-16 Identities = 65/71 (91%) Strand = Plus / Minus Query: 507 attccagcgtgactacagaggtagaaatcaaactccgttgggtggcatatcttcgaatca 566 |||||||| || ||||||||||||||||||||||| | ||||||||| ||||| |||||| Sbjct: 112840 attccagcatggctacagaggtagaaatcaaactctgatgggtggcagatctttgaatca 112781 Query: 567 acaacagttcc 577 ||||||||||| Sbjct: 112780 acaacagttcc 112770
>dbj|AK060277.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-005-H07, full insert sequence Length = 1740 Score = 143 bits (72), Expect = 7e-31 Identities = 96/104 (92%) Strand = Plus / Plus Query: 402 cgtaagtgtagcaaaggttgtttgtcaacgtctgcatttcgtctgctgagaagttgttct 461 |||| ||||||||||||||||||||||| ||||||||||||||||| | ||| ||||||| Sbjct: 1109 cgtacgtgtagcaaaggttgtttgtcaatgtctgcatttcgtctgcagtgaaattgttct 1168 Query: 462 catcccagaggacatggtagtgagctggcctacttgtaccctgg 505 ||||||| ||||| ||||||||||||||||||||||| |||||| Sbjct: 1169 catcccaaaggacgtggtagtgagctggcctacttgttccctgg 1212 Score = 123 bits (62), Expect = 7e-25 Identities = 112/128 (87%), Gaps = 3/128 (2%) Strand = Plus / Plus Query: 248 ggcaaaggcttcacggaggtaccattcgtcccactggagctcttcgacgtg---tggttc 304 ||||| |||||||| ||||| || ||||||||| |||||||||||||||| |||||| Sbjct: 739 ggcaatggcttcaccgaggttccgttcgtcccagtggagctcttcgacgtcgtctggttc 798 Query: 305 tccgacagctccggctccatgtagaaccgcgcccggaatgcagccagatgcgcgtaatat 364 ||||||| ||| |||||||||||||||||||| || || |||||||||||||| || ||| Sbjct: 799 tccgacatctctggctccatgtagaaccgcgctcgaaacgcagccagatgcgcatagtat 858 Query: 365 gcaggtgg 372 |||||||| Sbjct: 859 gcaggtgg 866
>gb|DQ321489.1| Nicotiana benthamiana AGO1-2 mRNA, partial cds Length = 2937 Score = 129 bits (65), Expect = 1e-26 Identities = 225/277 (81%), Gaps = 1/277 (0%) Strand = Plus / Minus Query: 313 ctccggctccatgtagaaccgcgcccggaatgcagccagatgcgcgtaatatgcaggtgg 372 |||||||||||| || || || || ||||| || |||| ||| || ||||||||||| || Sbjct: 2781 ctccggctccatataaaatcgagcacggaaagctgccaaatgtgcataatatgcaggggg 2722 Query: 373 gacgacggaaacagagcgcgtgcaccgtgcgtaagtgtagcaaaggttgtttgtcaacgt 432 |||| ||| || || |||||||||| ||| || || ||||| |||||||| ||||| | Sbjct: 2721 aacgatggagacggaacgcgtgcaccttgcatatgtatagcagaggttgttggtcaaaga 2662 Query: 433 ctgcatttcgtctgctgagaagttgttctcatcccagaggacatggtagtgagctggcct 492 ||||| | || |||| ||| |||||||| ||||| || ||||||||||||||||| | Sbjct: 2661 ctgcagcgcatcggctgtgaatttgttctcgtcccatagaacatggtagtgagctggacg 2602 Query: 493 acttgtaccctgggattccagcgtgactacagaggtagaaatcaaactccgttgggtggc 552 || |||||||| || || || || ||||| || |||||||||||||| || ||||||| Sbjct: 2601 gctcgtaccctgt-atgccggcatggctacaaagatagaaatcaaactctgtcgggtggc 2543 Query: 553 atatcttcgaatcaacaacagttccaggtaaaatgtt 589 ||||||| ||||| |||||||| ||||||| |||||| Sbjct: 2542 atatctttgaatctacaacagtaccaggtataatgtt 2506
>ref|XM_468547.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3430 Score = 105 bits (53), Expect = 2e-19 Identities = 210/261 (80%), Gaps = 1/261 (0%) Strand = Plus / Minus Query: 320 tccatgtagaaccgcgcccggaatgcagccagatgcgcgtaatatgcaggtgggacgacg 379 ||||| ||||| || || ||||| ||||||||||| || ||||| |||||||| || | Sbjct: 3019 tccatatagaaacgagcacggaaggcagccagatgagcataataagcaggtggaacaatt 2960 Query: 380 gaaacagagcgcgtgcaccgtgcgtaagtgtagcaaaggttgtttgtcaacgtctgcatt 439 || |||||||| ||||||| ||| || ||||||||||||||||| || | |||||| | Sbjct: 2959 gatacagagcgagtgcaccttgcataggtgtagcaaaggttgttggtaagaatctgcaat 2900 Query: 440 tcgtctgctgagaagttgttctcatcccagaggacatggtagtgagctggcctacttgta 499 | || |||| ||||||||| |||||||| | |||||| || |||||||| | ||| ||| Sbjct: 2899 gcatcagctgtgaagttgttttcatcccacaagacatgataatgagctggacgactagta 2840 Query: 500 ccctgggattccagcgtgactacagaggtagaaatcaaactccgttgggtggcatatctt 559 |||| || ||||| || ||||| |||||||| |||||||| ||||| || || ||||| Sbjct: 2839 ccct-taatgccagcatggctacacaggtagaagtcaaactcagttggatgacagatctt 2781 Query: 560 cgaatcaacaacagttccagg 580 ||||| ||||| || ||||| Sbjct: 2780 tgaatctacaaccgtaccagg 2760
>gb|AY109385.1| Zea mays CL857_2 mRNA sequence Length = 3777 Score = 99.6 bits (50), Expect = 1e-17 Identities = 199/249 (79%), Gaps = 1/249 (0%) Strand = Plus / Minus Query: 317 ggctccatgtagaaccgcgcccggaatgcagccagatgcgcgtaatatgcaggtgggacg 376 |||||||||||||| || || ||||| || |||||||| ||||| || || ||| Sbjct: 3370 ggctccatgtagaagcgagctcggaaggctgccagatgagcgtagtacgccnnnnncacg 3311 Query: 377 acggaaacagagcgcgtgcaccgtgcgtaagtgtagcaaaggttgtttgtcaacgtctgc 436 | ||| || ||||| ||||||| ||||| |||||||| |||||||| |||| |||||| Sbjct: 3310 atggacacggagcgggtgcacctagcgtacgtgtagcacaggttgttcgtcagggtctgc 3251 Query: 437 atttcgtctgctgagaagttgttctcatcccagaggacatggtagtgagctggcctactt 496 | ||||| |||| ||| |||||||| ||||| ||||||||||||||||| || | || Sbjct: 3250 agctcgtcagctgtgaacttgttctcgtcccacaggacatggtagtgagcagggcggctc 3191 Query: 497 gtaccctgggattccagcgtgactacagaggtagaaatcaaactccgttgggtggcatat 556 || |||| | || ||||| || ||||| |||||||| |||||||| || || ||||| || Sbjct: 3190 gttccct-gaatgccagcatggctacacaggtagaagtcaaactcagtaggatggcaaat 3132 Query: 557 cttcgaatc 565 ||||||||| Sbjct: 3131 cttcgaatc 3123
>ref|XM_473529.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3306 Score = 97.6 bits (49), Expect = 4e-17 Identities = 218/273 (79%), Gaps = 1/273 (0%) Strand = Plus / Minus Query: 317 ggctccatgtagaaccgcgcccggaatgcagccagatgcgcgtaatatgcaggtgggacg 376 ||||||||||| || || || ||||| || |||||||| || || || ||||| || || Sbjct: 3152 ggctccatgtaaaagcgagctcggaaggctgccagatgagcatagtacgcaggaggcaca 3093 Query: 377 acggaaacagagcgcgtgcaccgtgcgtaagtgtagcaaaggttgtttgtcaacgtctgc 436 | || |||||||| ||||||| ||| || |||||||| | |||||| || | || ||| Sbjct: 3092 attgatacagagcgagtgcaccttgcatacgtgtagcacaagttgttcgtgagggtttgc 3033 Query: 437 atttcgtctgctgagaagttgttctcatcccagaggacatggtagtgagctggcctactt 496 | |||||||| | || |||||||||||||| || ||||| || ||||| || | ||| Sbjct: 3032 aactcgtctgcagtaaatttgttctcatcccacagaacatgataatgagcaggacggctt 2973 Query: 497 gtaccctgggattccagcgtgactacagaggtagaaatcaaactccgttgggtggcatat 556 || ||||| || ||||| || ||||| ||||||||||||||||| ||||| ||||| || Sbjct: 2972 gttccctgt-atgccagcatggctacacaggtagaaatcaaactcggttggatggcaaat 2914 Query: 557 cttcgaatcaacaacagttccaggtaaaatgtt 589 ||| || ||||||||||||||||| | |||||| Sbjct: 2913 ctttgagtcaacaacagttccaggcagaatgtt 2881
>dbj|AK111996.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-A12, full insert sequence Length = 3641 Score = 97.6 bits (49), Expect = 4e-17 Identities = 218/273 (79%), Gaps = 1/273 (0%) Strand = Plus / Minus Query: 317 ggctccatgtagaaccgcgcccggaatgcagccagatgcgcgtaatatgcaggtgggacg 376 ||||||||||| || || || ||||| || |||||||| || || || ||||| || || Sbjct: 3192 ggctccatgtaaaagcgagctcggaaggctgccagatgagcatagtacgcaggaggcaca 3133 Query: 377 acggaaacagagcgcgtgcaccgtgcgtaagtgtagcaaaggttgtttgtcaacgtctgc 436 | || |||||||| ||||||| ||| || |||||||| | |||||| || | || ||| Sbjct: 3132 attgatacagagcgagtgcaccttgcatacgtgtagcacaagttgttcgtgagggtttgc 3073 Query: 437 atttcgtctgctgagaagttgttctcatcccagaggacatggtagtgagctggcctactt 496 | |||||||| | || |||||||||||||| || ||||| || ||||| || | ||| Sbjct: 3072 aactcgtctgcagtaaatttgttctcatcccacagaacatgataatgagcaggacggctt 3013 Query: 497 gtaccctgggattccagcgtgactacagaggtagaaatcaaactccgttgggtggcatat 556 || ||||| || ||||| || ||||| ||||||||||||||||| ||||| ||||| || Sbjct: 3012 gttccctgt-atgccagcatggctacacaggtagaaatcaaactcggttggatggcaaat 2954 Query: 557 cttcgaatcaacaacagttccaggtaaaatgtt 589 ||| || ||||||||||||||||| | |||||| Sbjct: 2953 ctttgagtcaacaacagttccaggcagaatgtt 2921
>dbj|AK111587.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091C01, full insert sequence Length = 3746 Score = 97.6 bits (49), Expect = 4e-17 Identities = 218/273 (79%), Gaps = 1/273 (0%) Strand = Plus / Minus Query: 317 ggctccatgtagaaccgcgcccggaatgcagccagatgcgcgtaatatgcaggtgggacg 376 ||||||||||| || || || ||||| || |||||||| || || || ||||| || || Sbjct: 3290 ggctccatgtaaaagcgagctcggaaggctgccagatgagcatagtacgcaggaggcaca 3231 Query: 377 acggaaacagagcgcgtgcaccgtgcgtaagtgtagcaaaggttgtttgtcaacgtctgc 436 | || |||||||| ||||||| ||| || |||||||| | |||||| || | || ||| Sbjct: 3230 attgatacagagcgagtgcaccttgcatacgtgtagcacaagttgttcgtgagggtttgc 3171 Query: 437 atttcgtctgctgagaagttgttctcatcccagaggacatggtagtgagctggcctactt 496 | |||||||| | || |||||||||||||| || ||||| || ||||| || | ||| Sbjct: 3170 aactcgtctgcagtaaatttgttctcatcccacagaacatgataatgagcaggacggctt 3111 Query: 497 gtaccctgggattccagcgtgactacagaggtagaaatcaaactccgttgggtggcatat 556 || ||||| || ||||| || ||||| ||||||||||||||||| ||||| ||||| || Sbjct: 3110 gttccctgt-atgccagcatggctacacaggtagaaatcaaactcggttggatggcaaat 3052 Query: 557 cttcgaatcaacaacagttccaggtaaaatgtt 589 ||| || ||||||||||||||||| | |||||| Sbjct: 3051 ctttgagtcaacaacagttccaggcagaatgtt 3019
>dbj|AK111504.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001B21, full insert sequence Length = 3746 Score = 97.6 bits (49), Expect = 4e-17 Identities = 218/273 (79%), Gaps = 1/273 (0%) Strand = Plus / Minus Query: 317 ggctccatgtagaaccgcgcccggaatgcagccagatgcgcgtaatatgcaggtgggacg 376 ||||||||||| || || || ||||| || |||||||| || || || ||||| || || Sbjct: 3375 ggctccatgtaaaagcgagctcggaaggctgccagatgagcatagtacgcaggaggcaca 3316 Query: 377 acggaaacagagcgcgtgcaccgtgcgtaagtgtagcaaaggttgtttgtcaacgtctgc 436 | || |||||||| ||||||| ||| || |||||||| | |||||| || | || ||| Sbjct: 3315 attgatacagagcgagtgcaccttgcatacgtgtagcacaagttgttcgtgagggtttgc 3256 Query: 437 atttcgtctgctgagaagttgttctcatcccagaggacatggtagtgagctggcctactt 496 | |||||||| | || |||||||||||||| || ||||| || ||||| || | ||| Sbjct: 3255 aactcgtctgcagtaaatttgttctcatcccacagaacatgataatgagcaggacggctt 3196 Query: 497 gtaccctgggattccagcgtgactacagaggtagaaatcaaactccgttgggtggcatat 556 || ||||| || ||||| || ||||| ||||||||||||||||| ||||| ||||| || Sbjct: 3195 gttccctgt-atgccagcatggctacacaggtagaaatcaaactcggttggatggcaaat 3137 Query: 557 cttcgaatcaacaacagttccaggtaaaatgtt 589 ||| || ||||||||||||||||| | |||||| Sbjct: 3136 ctttgagtcaacaacagttccaggcagaatgtt 3104
>dbj|AK103279.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124L10, full insert sequence Length = 3432 Score = 97.6 bits (49), Expect = 4e-17 Identities = 209/261 (80%), Gaps = 1/261 (0%) Strand = Plus / Minus Query: 320 tccatgtagaaccgcgcccggaatgcagccagatgcgcgtaatatgcaggtgggacgacg 379 ||||| ||||| || || ||||| ||||||||||| || ||||| |||||||| || | Sbjct: 3019 tccatatagaaacgagcacggaaggcagccagatgagcataataagcaggtggaacaatt 2960 Query: 380 gaaacagagcgcgtgcaccgtgcgtaagtgtagcaaaggttgtttgtcaacgtctgcatt 439 || |||||||| ||||||| ||| || ||||||||||||||||| || | |||||| | Sbjct: 2959 gatacagagcgagtgcaccttgcataggtgtagcaaaggttgttggtaagaatctgcaat 2900 Query: 440 tcgtctgctgagaagttgttctcatcccagaggacatggtagtgagctggcctacttgta 499 | || |||| ||||||||| |||||||| | |||||| || |||||||| | ||| ||| Sbjct: 2899 gcatcagctgtgaagttgttttcatcccacaagacatgataatgagctggacgactagta 2840 Query: 500 ccctgggattccagcgtgactacagaggtagaaatcaaactccgttgggtggcatatctt 559 |||| || ||||| || ||||| |||||||| |||||||| ||||| || | ||||| Sbjct: 2839 ccct-taatgccagcatggctacacaggtagaagtcaaactcagttggatgacggatctt 2781 Query: 560 cgaatcaacaacagttccagg 580 ||||| ||||| || ||||| Sbjct: 2780 tgaatctacaaccgtaccagg 2760
>dbj|AB081951.1| Oryza sativa (japonica cultivar-group) OsAGO1 mRNA for AGO1 homologous protein, complete cds Length = 3306 Score = 97.6 bits (49), Expect = 4e-17 Identities = 209/261 (80%), Gaps = 1/261 (0%) Strand = Plus / Minus Query: 320 tccatgtagaaccgcgcccggaatgcagccagatgcgcgtaatatgcaggtgggacgacg 379 ||||| ||||| || || ||||| ||||||||||| || ||||| |||||||| || | Sbjct: 2870 tccatatagaaacgagcacggaaggcagccagatgagcataataagcaggtggaacaatt 2811 Query: 380 gaaacagagcgcgtgcaccgtgcgtaagtgtagcaaaggttgtttgtcaacgtctgcatt 439 || |||||||| ||||||| ||| || ||||||||||||||||| || | |||||| | Sbjct: 2810 gatacagagcgagtgcaccttgcataggtgtagcaaaggttgttggtaagaatctgcaat 2751 Query: 440 tcgtctgctgagaagttgttctcatcccagaggacatggtagtgagctggcctacttgta 499 | || |||| ||||||||| |||| ||| | |||||| || |||||||| | ||| ||| Sbjct: 2750 gcatcagctgtgaagttgttttcattccacaagacatgataatgagctggacgactagta 2691 Query: 500 ccctgggattccagcgtgactacagaggtagaaatcaaactccgttgggtggcatatctt 559 |||| || ||||| || ||||| |||||||| |||||||| ||||| || || ||||| Sbjct: 2690 ccct-taatgccagcatggctacacaggtagaagtcaaactcagttggatgacagatctt 2632 Query: 560 cgaatcaacaacagttccagg 580 ||||| ||||| || ||||| Sbjct: 2631 tgaatctacaaccgtaccagg 2611
>gb|DQ321488.1| Nicotiana benthamiana AGO1-1 mRNA, partial cds Length = 3156 Score = 89.7 bits (45), Expect = 1e-14 Identities = 217/273 (79%), Gaps = 1/273 (0%) Strand = Plus / Minus Query: 317 ggctccatgtagaaccgcgcccggaatgcagccagatgcgcgtaatatgcaggtgggacg 376 ||||||||||| ||||| || ||||| || |||| ||| || |||||||| ||||| || Sbjct: 2999 ggctccatgtaaaaccgagcacggaaagctgccaaatgtgcataatatgctggtggaaca 2940 Query: 377 acggaaacagagcgcgtgcaccgtgcgtaagtgtagcaaaggttgtttgtcaacgtctgc 436 | ||| ||||| || || |||| || || || |||||||| ||||| ||||| | |||| Sbjct: 2939 atggagacagaacgagtacacctagcatatgtatagcaaagattgttagtcaaagactgc 2880 Query: 437 atttcgtctgctgagaagttgttctcatcccagaggacatggtagtgagctggcctactt 496 | |||| || | || |||||||||||||| || ||||| || |||||||| | || Sbjct: 2879 agggcgtcagcagtaaaattgttctcatcccacagaacatgataatgagctgggcggcta 2820 Query: 497 gtaccctgggattccagcgtgactacagaggtagaaatcaaactccgttgggtggcatat 556 |||||||| || || || || |||||||| ||||||||||| || || ||||||||||| Sbjct: 2819 gtaccctgt-atgccggcatggctacagagatagaaatcaaattcagtagggtggcatat 2761 Query: 557 cttcgaatcaacaacagttccaggtaaaatgtt 589 ||| ||||| ||||| || ||||| |||||||| Sbjct: 2760 ctttgaatctacaacggtaccaggcaaaatgtt 2728
>ref|XM_871080.1| PREDICTED: Bos taurus similar to GERp95 (LOC618754), partial mRNA Length = 1291 Score = 77.8 bits (39), Expect = 4e-11 Identities = 79/91 (86%), Gaps = 1/91 (1%) Strand = Plus / Minus Query: 461 tcatcccagaggacatggtagtgagctggcctacttgtaccctgggattccagcgtgact 520 ||||||||||| ||||||||||| | ||||| ||||| |||| |||| ||||| ||||| Sbjct: 143 tcatcccagagcacatggtagtgcgagggcctgcttgttccct-ggatgccagcatgact 85 Query: 521 acagaggtagaaatcaaactccgttgggtgg 551 ||| |||||||| |||||||| ||||||||| Sbjct: 84 acacaggtagaagtcaaactcagttgggtgg 54
>gb|AY533678.1| Bos taurus argonaute 2 (Ago2) mRNA, complete cds Length = 2590 Score = 77.8 bits (39), Expect = 4e-11 Identities = 79/91 (86%), Gaps = 1/91 (1%) Strand = Plus / Minus Query: 461 tcatcccagaggacatggtagtgagctggcctacttgtaccctgggattccagcgtgact 520 ||||||||||| ||||||||||| | ||||| ||||| |||| |||| ||||| ||||| Sbjct: 2319 tcatcccagagcacatggtagtgcgagggcctgcttgttccct-ggatgccagcatgact 2261 Query: 521 acagaggtagaaatcaaactccgttgggtgg 551 ||| |||||||| |||||||| ||||||||| Sbjct: 2260 acacaggtagaagtcaaactcagttgggtgg 2230
>ref|NM_205794.1| Bos taurus argonaute 2 (AGO2), mRNA Length = 2590 Score = 77.8 bits (39), Expect = 4e-11 Identities = 79/91 (86%), Gaps = 1/91 (1%) Strand = Plus / Minus Query: 461 tcatcccagaggacatggtagtgagctggcctacttgtaccctgggattccagcgtgact 520 ||||||||||| ||||||||||| | ||||| ||||| |||| |||| ||||| ||||| Sbjct: 2319 tcatcccagagcacatggtagtgcgagggcctgcttgttccct-ggatgccagcatgact 2261 Query: 521 acagaggtagaaatcaaactccgttgggtgg 551 ||| |||||||| |||||||| ||||||||| Sbjct: 2260 acacaggtagaagtcaaactcagttgggtgg 2230
>dbj|AK112025.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-C05, full insert sequence Length = 2043 Score = 77.8 bits (39), Expect = 4e-11 Identities = 202/255 (79%), Gaps = 1/255 (0%) Strand = Plus / Minus Query: 314 tccggctccatgtagaaccgcgcccggaatgcagccagatgcgcgtaatatgcaggtggg 373 |||||||||||||| || || || || ||||| || ||||| || ||||||||||| || Sbjct: 1722 tccggctccatgtaaaatcgagctcgaaatgccgcgagatgggcataatatgcaggagga 1663 Query: 374 acgacggaaacagagcgcgtgcaccgtgcgtaagtgtagcaaaggttgtttgtcaacgtc 433 |||| || || || || ||||||| ||| || |||||||| | ||||||||||| || Sbjct: 1662 acgattgatacggaacgggtgcaccttgcataggtgtagcacaagttgtttgtcagagtt 1603 Query: 434 tgcatttcgtctgctgagaagttgttctcatcccagaggacatggtagtgagctggccta 493 |||| | || || | ||| |||||||||||||| || ||||| || || || || | | Sbjct: 1602 tgcaaaccatcagcagtgaacttgttctcatcccacagaacatgataatgtgcagggcga 1543 Query: 494 cttgtaccctgggattccagcgtgactacagaggtagaaatcaaactccgttgggtggca 553 ||||| |||| | || || || || ||||| ||||||||||||||||| || || ||||| Sbjct: 1542 cttgttccct-gaatgcccgcatggctacacaggtagaaatcaaactcagtaggatggca 1484 Query: 554 tatcttcgaatcaac 568 |||||| |||||||| Sbjct: 1483 tatctttgaatcaac 1469
>dbj|AK111553.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050D21, full insert sequence Length = 3747 Score = 77.8 bits (39), Expect = 4e-11 Identities = 202/255 (79%), Gaps = 1/255 (0%) Strand = Plus / Minus Query: 314 tccggctccatgtagaaccgcgcccggaatgcagccagatgcgcgtaatatgcaggtggg 373 |||||||||||||| || || || || ||||| || ||||| || ||||||||||| || Sbjct: 3283 tccggctccatgtaaaatcgagctcgaaatgccgcgagatgggcataatatgcaggagga 3224 Query: 374 acgacggaaacagagcgcgtgcaccgtgcgtaagtgtagcaaaggttgtttgtcaacgtc 433 |||| || || || || ||||||| ||| || |||||||| | ||||||||||| || Sbjct: 3223 acgattgatacggaacgggtgcaccttgcataggtgtagcacaagttgtttgtcagagtt 3164 Query: 434 tgcatttcgtctgctgagaagttgttctcatcccagaggacatggtagtgagctggccta 493 |||| | || || | ||| |||||||||||||| || ||||| || || || || | | Sbjct: 3163 tgcaaaccatcagcagtgaacttgttctcatcccacagaacatgataatgtgcagggcga 3104 Query: 494 cttgtaccctgggattccagcgtgactacagaggtagaaatcaaactccgttgggtggca 553 ||||| |||| | || || || || ||||| ||||||||||||||||| || || ||||| Sbjct: 3103 cttgttccct-gaatgcccgcatggctacacaggtagaaatcaaactcagtaggatggca 3045 Query: 554 tatcttcgaatcaac 568 |||||| |||||||| Sbjct: 3044 tatctttgaatcaac 3030
>gb|BT009477.1| Triticum aestivum clone wr1.pk0034.f4:fis, full insert mRNA sequence Length = 2511 Score = 75.8 bits (38), Expect = 1e-10 Identities = 96/114 (84%), Gaps = 1/114 (0%) Strand = Plus / Minus Query: 455 ttgttctcatcccagaggacatggtagtgagctggcctacttgtaccctgggattccagc 514 |||||||||||||| ||||||||||| || || || | ||||| ||||| || ||||| Sbjct: 1911 ttgttctcatcccaaaggacatggtaatgcgcagggcggcttgttccctga-ataccagc 1853 Query: 515 gtgactacagaggtagaaatcaaactccgttgggtggcatatcttcgaatcaac 568 || ||||| ||||||||||||||||| || || ||||||||||| |||||||| Sbjct: 1852 atggctacaaaggtagaaatcaaactcggtaggatggcatatctttgaatcaac 1799
>emb|BX818680.1|CNS0ACI7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL91ZD02 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 728 Score = 73.8 bits (37), Expect = 6e-10 Identities = 67/77 (87%) Strand = Plus / Minus Query: 510 ccagcgtgactacagaggtagaaatcaaactccgttgggtggcatatcttcgaatcaaca 569 |||||||||||||||||||| || |||||||| || |||||||| || || || || ||| Sbjct: 206 ccagcgtgactacagaggtaaaagtcaaactctgtagggtggcagattttagagtccaca 147 Query: 570 acagttccaggtaaaat 586 ||||| ||||||||||| Sbjct: 146 acagtgccaggtaaaat 130
>emb|AL662954.2|OSJN00155 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0005N02, complete sequence Length = 175163 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 510 ccagcgtgactacagaggtagaaatcaaactccgttgggtggcatatcttcgaatcaaca 569 ||||| || ||||| ||||||||||||||||| ||||| ||||| ||||| || |||||| Sbjct: 49395 ccagcatggctacacaggtagaaatcaaactcggttggatggcaaatctttgagtcaaca 49454 Query: 570 acagttcc 577 |||||||| Sbjct: 49455 acagttcc 49462
>dbj|AB236789.1| Trifolium pratense RNA for putative Argonaute protein, partial cds, clone: C1844 Length = 1165 Score = 71.9 bits (36), Expect = 2e-09 Identities = 109/132 (82%), Gaps = 1/132 (0%) Strand = Plus / Minus Query: 458 ttctcatcccagaggacatggtagtgagctggcctacttgtaccctgggattccagcgtg 517 ||||||||||| ||||||||||| |||||||| | || ||||||| | || ||||| || Sbjct: 603 ttctcatcccataggacatggtaatgagctggacggctagtaccct-gaataccagcatg 545 Query: 518 actacagaggtagaaatcaaactccgttgggtggcatatcttcgaatcaacaacagttcc 577 ||| || |||||||| |||||||| || || || || ||||| ||||| ||||| || || Sbjct: 544 actgcaaaggtagaagtcaaactcagtgggatgacaaatcttagaatccacaactgtgcc 485 Query: 578 aggtaaaatgtt 589 |||||| ||||| Sbjct: 484 aggtaatatgtt 473
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 510 ccagcgtgactacagaggtagaaatcaaactccgttgggtggcatatcttcgaatcaaca 569 ||||| || ||||| ||||||||||||||||| ||||| ||||| ||||| || |||||| Sbjct: 28400720 ccagcatggctacacaggtagaaatcaaactcggttggatggcaaatctttgagtcaaca 28400779 Query: 570 acagttcc 577 |||||||| Sbjct: 28400780 acagttcc 28400787
>ref|NM_103737.2| Arabidopsis thaliana AGO1 (ARGONAUTE 1) AT1G48410 (AGO1) transcript variant AT1G48410.1 mRNA, complete cds Length = 3483 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 510 ccagcgtgactacagaggtagaaatcaaactccgttgggtggcatatcttcgaatcaaca 569 ||||| |||||||||||||| || |||||||| || |||||||| || || || || ||| Sbjct: 2950 ccagcatgactacagaggtaaaagtcaaactctgtagggtggcagattttagagtccaca 2891 Query: 570 acagttccaggtaaaat 586 ||||| ||||||||||| Sbjct: 2890 acagtgccaggtaaaat 2874
>ref|NM_179453.1| Arabidopsis thaliana AGO1 (ARGONAUTE 1) AT1G48410 (AGO1) transcript variant AT1G48410.2 mRNA, complete cds Length = 3489 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 510 ccagcgtgactacagaggtagaaatcaaactccgttgggtggcatatcttcgaatcaaca 569 ||||| |||||||||||||| || |||||||| || |||||||| || || || || ||| Sbjct: 2956 ccagcatgactacagaggtaaaagtcaaactctgtagggtggcagattttagagtccaca 2897 Query: 570 acagttccaggtaaaat 586 ||||| ||||||||||| Sbjct: 2896 acagtgccaggtaaaat 2880
>gb|BT000941.1| Arabidopsis thaliana clone C105223 putative leaf development protein Argonaute (At1g48410) mRNA, complete cds Length = 3177 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 510 ccagcgtgactacagaggtagaaatcaaactccgttgggtggcatatcttcgaatcaaca 569 ||||| |||||||||||||| || |||||||| || |||||||| || || || || ||| Sbjct: 2801 ccagcatgactacagaggtaaaagtcaaactctgtagggtggcagattttagagtccaca 2742 Query: 570 acagttccaggtaaaat 586 ||||| ||||||||||| Sbjct: 2741 acagtgccaggtaaaat 2725
>gb|AY080690.1| Arabidopsis thaliana At1g48410 mRNA sequence Length = 2764 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 510 ccagcgtgactacagaggtagaaatcaaactccgttgggtggcatatcttcgaatcaaca 569 ||||| |||||||||||||| || |||||||| || |||||||| || || || || ||| Sbjct: 2199 ccagcatgactacagaggtaaaagtcaaactctgtagggtggcagattttagagtccaca 2140 Query: 570 acagttccaggtaaaat 586 ||||| ||||||||||| Sbjct: 2139 acagtgccaggtaaaat 2123
>emb|BX815116.1|CNS0AAU5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS34ZG07 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 3188 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 510 ccagcgtgactacagaggtagaaatcaaactccgttgggtggcatatcttcgaatcaaca 569 ||||| |||||||||||||| || |||||||| || |||||||| || || || || ||| Sbjct: 2677 ccagcatgactacagaggtaaaagtcaaactctgtagggtggcagattttagagtccaca 2618 Query: 570 acagttccaggtaaaat 586 ||||| ||||||||||| Sbjct: 2617 acagtgccaggtaaaat 2601
>gb|U91995.1|ATU91995 Arabidopsis thaliana Argonaute protein (AGO1) mRNA, complete cds Length = 3473 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 510 ccagcgtgactacagaggtagaaatcaaactccgttgggtggcatatcttcgaatcaaca 569 ||||| |||||||||||||| || |||||||| || |||||||| || || || || ||| Sbjct: 2927 ccagcatgactacagaggtaaaagtcaaactctgtagggtggcagattttagagtccaca 2868 Query: 570 acagttccaggtaaaat 586 ||||| ||||||||||| Sbjct: 2867 acagtgccaggtaaaat 2851
>dbj|AK111833.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023128K18, full insert sequence Length = 1312 Score = 63.9 bits (32), Expect = 6e-07 Identities = 117/144 (81%), Gaps = 1/144 (0%) Strand = Plus / Minus Query: 446 gctgagaagttgttctcatcccagaggacatggtagtgagctggcctacttgtaccctgg 505 |||| ||||||||| |||||||| ||||| ||||| ||||| || | ||||| |||| | Sbjct: 748 gctgtgaagttgttttcatcccacaggacgtggtaatgagcgggacggcttgtgcccttg 689 Query: 506 gattccagcgtgactacagaggtagaaatcaaactccgttgggtggcatatcttcgaatc 565 |||||||| || || || | | |||| ||||||||||| || ||||| ||||| || || Sbjct: 688 -attccagcatggctgcacaagaagaagtcaaactccgtaggatggcaaatcttggagtc 630 Query: 566 aacaacagttccaggtaaaatgtt 589 ||||||||| ||||| || ||||| Sbjct: 629 aacaacagtaccaggcaatatgtt 606
>dbj|AK111500.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000K24, full insert sequence Length = 3638 Score = 63.9 bits (32), Expect = 6e-07 Identities = 117/144 (81%), Gaps = 1/144 (0%) Strand = Plus / Minus Query: 446 gctgagaagttgttctcatcccagaggacatggtagtgagctggcctacttgtaccctgg 505 |||| ||||||||| |||||||| ||||| ||||| ||||| || | ||||| |||| | Sbjct: 3062 gctgtgaagttgttttcatcccacaggacgtggtaatgagcgggacggcttgtgcccttg 3003 Query: 506 gattccagcgtgactacagaggtagaaatcaaactccgttgggtggcatatcttcgaatc 565 |||||||| || || || | | |||| ||||||||||| || ||||| ||||| || || Sbjct: 3002 -attccagcatggctgcacaagaagaagtcaaactccgtaggatggcaaatcttggagtc 2944 Query: 566 aacaacagttccaggtaaaatgtt 589 ||||||||| ||||| || ||||| Sbjct: 2943 aacaacagtaccaggcaatatgtt 2920
>gb|BT016774.1| Zea mays clone Contig607 mRNA sequence Length = 1039 Score = 61.9 bits (31), Expect = 2e-06 Identities = 92/111 (82%), Gaps = 1/111 (0%) Strand = Plus / Plus Query: 452 aagttgttctcatcccagaggacatggtagtgagctggcctacttgtaccctgggattcc 511 ||||||||||||||||| || |||||||| || || || | ||||| ||||| || || Sbjct: 570 aagttgttctcatcccacagaacatggtaatgggcagggcggcttgttccctga-atgcc 628 Query: 512 agcgtgactacagaggtagaaatcaaactccgttgggtggcatatcttcga 562 ||| || || || ||||||||||||||||| ||||| ||||| |||||||| Sbjct: 629 agcatggctgcacaggtagaaatcaaactcagttggatggcagatcttcga 679 Score = 42.1 bits (21), Expect = 2.0 Identities = 45/53 (84%) Strand = Plus / Plus Query: 317 ggctccatgtagaaccgcgcccggaatgcagccagatgcgcgtaatatgcagg 369 ||||||||||||||||| || ||||| || ||||| || || || |||||||| Sbjct: 435 ggctccatgtagaaccgagctcggaaggctgccaggtgagcatagtatgcagg 487
>gb|AY110984.1| Zea mays CL857_3 mRNA sequence Length = 2419 Score = 61.9 bits (31), Expect = 2e-06 Identities = 92/111 (82%), Gaps = 1/111 (0%) Strand = Plus / Minus Query: 452 aagttgttctcatcccagaggacatggtagtgagctggcctacttgtaccctgggattcc 511 ||||||||||||||||| || |||||||| || || || | ||||| ||||| || || Sbjct: 2001 aagttgttctcatcccacagaacatggtaatgggcagggcggcttgttccctga-atgcc 1943 Query: 512 agcgtgactacagaggtagaaatcaaactccgttgggtggcatatcttcga 562 ||| || || || ||||||||||||||||| ||||| ||||| |||||||| Sbjct: 1942 agcatggctgcacaggtagaaatcaaactcagttggatggcagatcttcga 1892 Score = 42.1 bits (21), Expect = 2.0 Identities = 45/53 (84%) Strand = Plus / Minus Query: 317 ggctccatgtagaaccgcgcccggaatgcagccagatgcgcgtaatatgcagg 369 ||||||||||||||||| || ||||| || ||||| || || || |||||||| Sbjct: 2136 ggctccatgtagaaccgagctcggaaggctgccaggtgagcatagtatgcagg 2084
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 60.0 bits (30), Expect = 9e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 519 ctacagaggtagaaatcaaactccgttgggtggcatatcttcgaatcaac 568 ||||| ||||||||||||||||| || || ||||||||||| |||||||| Sbjct: 27349630 ctacacaggtagaaatcaaactcagtaggatggcatatctttgaatcaac 27349679 Score = 54.0 bits (27), Expect = 5e-04 Identities = 81/99 (81%) Strand = Plus / Plus Query: 407 gtgtagcaaaggttgtttgtcaacgtctgcatttcgtctgctgagaagttgttctcatcc 466 ||||||||||||||||| || | |||||| | | || |||| ||||||||| |||||| Sbjct: 35780490 gtgtagcaaaggttgttggtaagaatctgcaatgcatcagctgtgaagttgttttcatcc 35780549 Query: 467 cagaggacatggtagtgagctggcctacttgtaccctgg 505 || | |||||| || |||||||| | ||| ||||||||| Sbjct: 35780550 cacaagacatgataatgagctggacgactagtaccctgg 35780588 Score = 42.1 bits (21), Expect = 2.0 Identities = 45/53 (84%) Strand = Plus / Plus Query: 320 tccatgtagaaccgcgcccggaatgcagccagatgcgcgtaatatgcaggtgg 372 ||||| ||||| || || ||||| ||||||||||| || ||||| |||||||| Sbjct: 35780236 tccatatagaaacgagcacggaaggcagccagatgagcataataagcaggtgg 35780288 Score = 40.1 bits (20), Expect = 8.0 Identities = 47/56 (83%) Strand = Plus / Plus Query: 314 tccggctccatgtagaaccgcgcccggaatgcagccagatgcgcgtaatatgcagg 369 |||||||||||||| || || || || ||||| || ||||| || ||||||||||| Sbjct: 27349132 tccggctccatgtaaaatcgagctcgaaatgccgcgagatgggcataatatgcagg 27349187
>dbj|AP004188.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1493_H11 Length = 106693 Score = 60.0 bits (30), Expect = 9e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 519 ctacagaggtagaaatcaaactccgttgggtggcatatcttcgaatcaac 568 ||||| ||||||||||||||||| || || ||||||||||| |||||||| Sbjct: 64563 ctacacaggtagaaatcaaactcagtaggatggcatatctttgaatcaac 64612 Score = 40.1 bits (20), Expect = 8.0 Identities = 47/56 (83%) Strand = Plus / Plus Query: 314 tccggctccatgtagaaccgcgcccggaatgcagccagatgcgcgtaatatgcagg 369 |||||||||||||| || || || || ||||| || ||||| || ||||||||||| Sbjct: 64065 tccggctccatgtaaaatcgagctcgaaatgccgcgagatgggcataatatgcagg 64120
>gb|AY110697.1| Zea mays CL54685_1 mRNA sequence Length = 1054 Score = 58.0 bits (29), Expect = 3e-05 Identities = 96/117 (82%), Gaps = 1/117 (0%) Strand = Plus / Plus Query: 473 acatggtagtgagctggcctacttgtaccctgggattccagcgtgactacagaggtagaa 532 ||||||||||| ||||||| || || ||||| || |||| ||| ||||| |||||||| Sbjct: 600 acatggtagtgtgctggccggctcgttccctgt-atgccagagtggctacaaaggtagaa 658 Query: 533 atcaaactccgttgggtggcatatcttcgaatcaacaacagttccaggtaaaatgtt 589 || || || |||| ||||||||||||| |||||||||||||| || |||||||| Sbjct: 659 gtcgaattcacttggatggcatatcttcgtgtcaacaacagttcctggcaaaatgtt 715
>ref|XM_528287.1| PREDICTED: Pan troglodytes similar to GERp95 (LOC472917), mRNA Length = 876 Score = 56.0 bits (28), Expect = 1e-04 Identities = 74/88 (84%), Gaps = 1/88 (1%) Strand = Plus / Minus Query: 464 tcccagaggacatggtagtgagctggcctacttgtaccctgggattccagcgtgactaca 523 ||||||||||| || ||||| | ||||| ||||| |||||| || |||||||||||||| Sbjct: 605 tcccagaggacgtgatagtgcgaaggcctgcttgtcccctgg-atgccagcgtgactaca 547 Query: 524 gaggtagaaatcaaactccgttgggtgg 551 |||||||| || ||||| || |||||| Sbjct: 546 caggtagaagtcgaactcggtggggtgg 519
>ref|XM_532338.2| PREDICTED: Canis familiaris similar to eukaryotic translation initiation factor 2C, 2 (LOC475107), mRNA Length = 3587 Score = 56.0 bits (28), Expect = 1e-04 Identities = 56/64 (87%), Gaps = 1/64 (1%) Strand = Plus / Minus Query: 488 ggcctacttgtaccctgggattccagcgtgactacagaggtagaaatcaaactccgttgg 547 ||||| ||||| |||||| || |||||||||||||| |||||||| |||||||| || || Sbjct: 2405 ggcctgcttgttccctgg-atgccagcgtgactacacaggtagaagtcaaactcggtcgg 2347 Query: 548 gtgg 551 |||| Sbjct: 2346 gtgg 2343
>gb|BC007633.1| Homo sapiens eukaryotic translation initiation factor 2C, 2, mRNA (cDNA clone IMAGE:3510656), complete cds Length = 1793 Score = 56.0 bits (28), Expect = 1e-04 Identities = 74/88 (84%), Gaps = 1/88 (1%) Strand = Plus / Minus Query: 464 tcccagaggacatggtagtgagctggcctacttgtaccctgggattccagcgtgactaca 523 ||||||||||| || ||||| | ||||| ||||| |||||| || |||||||||||||| Sbjct: 1234 tcccagaggacgtgatagtgcgaaggcctgcttgtcccctgg-atgccagcgtgactaca 1176 Query: 524 gaggtagaaatcaaactccgttgggtgg 551 |||||||| || ||||| || |||||| Sbjct: 1175 caggtagaagtcgaactcggtggggtgg 1148
>gb|BT008031.1| Synthetic construct Homo sapiens eukaryotic translation initiation factor 2C, 2 mRNA, partial cds Length = 1758 Score = 56.0 bits (28), Expect = 1e-04 Identities = 74/88 (84%), Gaps = 1/88 (1%) Strand = Plus / Minus Query: 464 tcccagaggacatggtagtgagctggcctacttgtaccctgggattccagcgtgactaca 523 ||||||||||| || ||||| | ||||| ||||| |||||| || |||||||||||||| Sbjct: 1487 tcccagaggacgtgatagtgcgaaggcctgcttgtcccctgg-atgccagcgtgactaca 1429 Query: 524 gaggtagaaatcaaactccgttgggtgg 551 |||||||| || ||||| || |||||| Sbjct: 1428 caggtagaagtcgaactcggtggggtgg 1401
>gb|BT007229.1| Homo sapiens eukaryotic translation initiation factor 2C, 2 mRNA, complete cds Length = 1758 Score = 56.0 bits (28), Expect = 1e-04 Identities = 74/88 (84%), Gaps = 1/88 (1%) Strand = Plus / Minus Query: 464 tcccagaggacatggtagtgagctggcctacttgtaccctgggattccagcgtgactaca 523 ||||||||||| || ||||| | ||||| ||||| |||||| || |||||||||||||| Sbjct: 1487 tcccagaggacgtgatagtgcgaaggcctgcttgtcccctgg-atgccagcgtgactaca 1429 Query: 524 gaggtagaaatcaaactccgttgggtgg 551 |||||||| || ||||| || |||||| Sbjct: 1428 caggtagaagtcgaactcggtggggtgg 1401
>gb|AY077717.1| Homo sapiens eukaryotic initiation factor 2C2 mRNA, complete cds Length = 2559 Score = 56.0 bits (28), Expect = 1e-04 Identities = 74/88 (84%), Gaps = 1/88 (1%) Strand = Plus / Minus Query: 464 tcccagaggacatggtagtgagctggcctacttgtaccctgggattccagcgtgactaca 523 ||||||||||| || ||||| | ||||| ||||| |||||| || |||||||||||||| Sbjct: 2288 tcccagaggacgtgatagtgcgaaggcctgcttgtcccctgg-atgccagcgtgactaca 2230 Query: 524 gaggtagaaatcaaactccgttgggtgg 551 |||||||| || ||||| || |||||| Sbjct: 2229 caggtagaagtcgaactcggtggggtgg 2202
>ref|NM_012154.2| Homo sapiens eukaryotic translation initiation factor 2C, 2 (EIF2C2), mRNA Length = 3567 Score = 56.0 bits (28), Expect = 1e-04 Identities = 74/88 (84%), Gaps = 1/88 (1%) Strand = Plus / Minus Query: 464 tcccagaggacatggtagtgagctggcctacttgtaccctgggattccagcgtgactaca 523 ||||||||||| || ||||| | ||||| ||||| |||||| || |||||||||||||| Sbjct: 2349 tcccagaggacgtgatagtgcgaaggcctgcttgtcccctgg-atgccagcgtgactaca 2291 Query: 524 gaggtagaaatcaaactccgttgggtgg 551 |||||||| || ||||| || |||||| Sbjct: 2290 caggtagaagtcgaactcggtggggtgg 2263
>gb|BC018727.1| Homo sapiens eukaryotic translation initiation factor 2C, 2, mRNA (cDNA clone IMAGE:3356425), partial cds Length = 2815 Score = 56.0 bits (28), Expect = 1e-04 Identities = 74/88 (84%), Gaps = 1/88 (1%) Strand = Plus / Minus Query: 464 tcccagaggacatggtagtgagctggcctacttgtaccctgggattccagcgtgactaca 523 ||||||||||| || ||||| | ||||| ||||| |||||| || |||||||||||||| Sbjct: 1597 tcccagaggacgtgatagtgcgaaggcctgcttgtcccctgg-atgccagcgtgactaca 1539 Query: 524 gaggtagaaatcaaactccgttgggtgg 551 |||||||| || ||||| || |||||| Sbjct: 1538 caggtagaagtcgaactcggtggggtgg 1511
>dbj|AK122176.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148L17, full insert sequence Length = 3644 Score = 56.0 bits (28), Expect = 1e-04 Identities = 116/144 (80%), Gaps = 1/144 (0%) Strand = Plus / Minus Query: 446 gctgagaagttgttctcatcccagaggacatggtagtgagctggcctacttgtaccctgg 505 |||| ||||||||| |||||||| ||||| ||||| ||||| || ||||| |||| | Sbjct: 3081 gctgtgaagttgttttcatcccacaggacgtggtaatgagcgggatggcttgtgcccttg 3022 Query: 506 gattccagcgtgactacagaggtagaaatcaaactccgttgggtggcatatcttcgaatc 565 |||||||| || || || | | |||| ||||||||||| || ||||| ||||| || || Sbjct: 3021 -attccagcatggctgcacaagaagaagtcaaactccgtaggatggcaaatcttggagtc 2963 Query: 566 aacaacagttccaggtaaaatgtt 589 ||||||||| ||||| || ||||| Sbjct: 2962 aacaacagtaccaggcaatatgtt 2939
>gb|AF121255.2|AF121255 Homo sapiens protein translation initiation factor 2C2 (EIF2C2) mRNA, partial cds Length = 1823 Score = 56.0 bits (28), Expect = 1e-04 Identities = 74/88 (84%), Gaps = 1/88 (1%) Strand = Plus / Minus Query: 464 tcccagaggacatggtagtgagctggcctacttgtaccctgggattccagcgtgactaca 523 ||||||||||| || ||||| | ||||| ||||| |||||| || |||||||||||||| Sbjct: 863 tcccagaggacgtgatagtgcgaaggcctgcttgtcccctgg-atgccagcgtgactaca 805 Query: 524 gaggtagaaatcaaactccgttgggtgg 551 |||||||| || ||||| || |||||| Sbjct: 804 caggtagaagtcgaactcggtggggtgg 777
>ref|NM_001004877.1| Xenopus tropicalis MGC88879 protein (MGC88879), mRNA Length = 3687 Score = 54.0 bits (27), Expect = 5e-04 Identities = 76/91 (83%), Gaps = 1/91 (1%) Strand = Plus / Minus Query: 461 tcatcccagaggacatggtagtgagctggcctacttgtaccctgggattccagcgtgact 520 |||||||| |||||||| ||||| | ||||| ||||| ||||| || ||||||||||| Sbjct: 2586 tcatcccacaggacatgatagtgcgacggcctgcttgttccctga-ataccagcgtgact 2528 Query: 521 acagaggtagaaatcaaactccgttgggtgg 551 || ||||| ||||||||||| | ||||||| Sbjct: 2527 gcacaggtaaaaatcaaactctgatgggtgg 2497
>dbj|AP004082.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1149_C12 Length = 120743 Score = 54.0 bits (27), Expect = 5e-04 Identities = 81/99 (81%) Strand = Plus / Plus Query: 407 gtgtagcaaaggttgtttgtcaacgtctgcatttcgtctgctgagaagttgttctcatcc 466 ||||||||||||||||| || | |||||| | | || |||| ||||||||| |||||| Sbjct: 51205 gtgtagcaaaggttgttggtaagaatctgcaatgcatcagctgtgaagttgttttcatcc 51264 Query: 467 cagaggacatggtagtgagctggcctacttgtaccctgg 505 || | |||||| || |||||||| | ||| ||||||||| Sbjct: 51265 cacaagacatgataatgagctggacgactagtaccctgg 51303 Score = 42.1 bits (21), Expect = 2.0 Identities = 45/53 (84%) Strand = Plus / Plus Query: 320 tccatgtagaaccgcgcccggaatgcagccagatgcgcgtaatatgcaggtgg 372 ||||| ||||| || || ||||| ||||||||||| || ||||| |||||||| Sbjct: 50951 tccatatagaaacgagcacggaaggcagccagatgagcataataagcaggtgg 51003
>emb|AJ234870.1|HVU234870 Hordeum vulgare genomic DNA fragment; clone MWG2264 Length = 447 Score = 54.0 bits (27), Expect = 5e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 525 aggtagaaatcaaactccgttgggtggcatatcttcgaatcaacaac 571 |||||||| ||||||| || || ||||||||||||||||||||||| Sbjct: 447 aggtagaagtcaaactgtgtgggatggcatatcttcgaatcaacaac 401
>gb|BC075263.1| Xenopus tropicalis MGC88879 protein, mRNA (cDNA clone MGC:88879 IMAGE:6998277), complete cds Length = 3687 Score = 54.0 bits (27), Expect = 5e-04 Identities = 76/91 (83%), Gaps = 1/91 (1%) Strand = Plus / Minus Query: 461 tcatcccagaggacatggtagtgagctggcctacttgtaccctgggattccagcgtgact 520 |||||||| |||||||| ||||| | ||||| ||||| ||||| || ||||||||||| Sbjct: 2586 tcatcccacaggacatgatagtgcgacggcctgcttgttccctga-ataccagcgtgact 2528 Query: 521 acagaggtagaaatcaaactccgttgggtgg 551 || ||||| ||||||||||| | ||||||| Sbjct: 2527 gcacaggtaaaaatcaaactctgatgggtgg 2497
>ref|NM_185035.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3177 Score = 52.0 bits (26), Expect = 0.002 Identities = 84/102 (82%), Gaps = 1/102 (0%) Strand = Plus / Minus Query: 457 gttctcatcccagaggacatggtagtgagctggcctacttgtaccctgggattccagcgt 516 ||||||||| | ||||||||||| |||| |||||| || ||||||| | || ||||| | Sbjct: 2910 gttctcatcgtaaaggacatggtaatgagttggcctgctagtaccct-gtatgccagcat 2852 Query: 517 gactacagaggtagaaatcaaactccgttgggtggcatatct 558 | ||||| ||||||||||| ||||| || || ||||| |||| Sbjct: 2851 ggctacacaggtagaaatcgaactctgtaggatggcaaatct 2810
>gb|BC073067.1| Xenopus laevis cDNA clone IMAGE:5155078, containing frame-shift errors Length = 3509 Score = 52.0 bits (26), Expect = 0.002 Identities = 66/78 (84%), Gaps = 1/78 (1%) Strand = Plus / Minus Query: 461 tcatcccagaggacatggtagtgagctggcctacttgtaccctgggattccagcgtgact 520 ||||||||||| || ||||| |||| ||| | |||||| ||||| || ||||| ||||| Sbjct: 2409 tcatcccagagaacctggtaatgagatggacgacttgttccctga-atcccagcatgact 2351 Query: 521 acagaggtagaaatcaaa 538 |||||| ||||||||||| Sbjct: 2350 acagagatagaaatcaaa 2333
>gb|BC098982.1| Xenopus laevis cDNA clone MGC:114859 IMAGE:5156068, complete cds Length = 4129 Score = 52.0 bits (26), Expect = 0.002 Identities = 66/78 (84%), Gaps = 1/78 (1%) Strand = Plus / Minus Query: 461 tcatcccagaggacatggtagtgagctggcctacttgtaccctgggattccagcgtgact 520 ||||||||||| || ||||| |||| ||| | |||||| ||||| || ||||| ||||| Sbjct: 2407 tcatcccagagaacctggtaatgagatggacgacttgttccctga-atcccagcatgact 2349 Query: 521 acagaggtagaaatcaaa 538 |||||| ||||||||||| Sbjct: 2348 acagagatagaaatcaaa 2331
>gb|AF290466.1|AF290466 Lolium perenne clone Lp2264A unknown sequence Length = 409 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 525 aggtagaaatcaaactccgttgggtggcatatcttcgaatcaacaacagt 574 |||||||| ||||||| || || |||||||||||||||||||| ||||| Sbjct: 1 aggtagaagtcaaactgtgtgggatggcatatcttcgaatcaacgacagt 50
>ref|XM_469312.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2688 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Minus Query: 549 tggcatatcttcgaatcaacaacagttccaggtaaaatgtt 589 ||||||||||| | |||||||||||||||||||| ||||| Sbjct: 2324 tggcatatcttagtgtcaacaacagttccaggtaagatgtt 2284
>gb|BC077863.1| Xenopus laevis eukaryotic translation initiation factor 2C, 1, mRNA (cDNA clone MGC:80582 IMAGE:5440319), complete cds Length = 3298 Score = 50.1 bits (25), Expect = 0.008 Identities = 68/81 (83%), Gaps = 1/81 (1%) Strand = Plus / Minus Query: 461 tcatcccagaggacatggtagtgagctggcctacttgtaccctgggattccagcgtgact 520 |||||||| |||||||| ||||| | ||||| ||||| ||||| || ||||||||||| Sbjct: 2583 tcatcccacaggacatgatagtgtgacggcctgcttgttccctga-ataccagcgtgact 2525 Query: 521 acagaggtagaaatcaaactc 541 || ||||| ||||||||||| Sbjct: 2524 gcacaggtaaaaatcaaactc 2504
>ref|XM_418421.1| PREDICTED: Gallus gallus similar to eukaryotic translation initiation factor 2C, 2; argonaute 2 (LOC420311), mRNA Length = 2817 Score = 50.1 bits (25), Expect = 0.008 Identities = 68/81 (83%), Gaps = 1/81 (1%) Strand = Plus / Minus Query: 461 tcatcccagaggacatggtagtgagctggcctacttgtaccctgggattccagcgtgact 520 |||||||||||||| ||||| || | || || ||||| ||||| || ||||||||||| Sbjct: 2285 tcatcccagaggacgtggtaatgcgaaggtctgcttgttccctga-ataccagcgtgact 2227 Query: 521 acagaggtagaaatcaaactc 541 ||| |||||||| |||||||| Sbjct: 2226 acacaggtagaagtcaaactc 2206
>gb|AF290467.1|AF290467 Lolium perenne clone Lp2264B unknown sequence Length = 560 Score = 50.1 bits (25), Expect = 0.008 Identities = 46/53 (86%) Strand = Plus / Plus Query: 525 aggtagaaatcaaactccgttgggtggcatatcttcgaatcaacaacagttcc 577 |||||||| ||||||| || || ||||||||||| ||||||||||| ||||| Sbjct: 1 aggtagaagtcaaactgtgtgggatggcatatctttgaatcaacaaccgttcc 53
>gb|AC007932.3|F11A17 Arabidopsis thaliana chromosome 1 BAC F11A17 sequence, complete sequence Length = 102078 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Minus Query: 510 ccagcgtgactacagaggtagaaatcaaactccgttgggtggcatatcttcgaatcaaca 569 ||||| |||||||||||||| || |||||||| || |||||||| || || || || ||| Sbjct: 17150 ccagcatgactacagaggtaaaagtcaaactctgtagggtggcagattttagagtccaca 17091 Query: 570 acagt 574 ||||| Sbjct: 17090 acagt 17086
>gb|AC020889.3|AC020889 Genomic sequence for Arabidopsis thaliana BAC T1N15 from chromosome I, complete sequence Length = 95295 Score = 50.1 bits (25), Expect = 0.008 Identities = 55/65 (84%) Strand = Plus / Plus Query: 510 ccagcgtgactacagaggtagaaatcaaactccgttgggtggcatatcttcgaatcaaca 569 ||||| |||||||||||||| || |||||||| || |||||||| || || || || ||| Sbjct: 1806 ccagcatgactacagaggtaaaagtcaaactctgtagggtggcagattttagagtccaca 1865 Query: 570 acagt 574 ||||| Sbjct: 1866 acagt 1870
>gb|AY436348.2| Bos taurus argonaute 3 (Ago3) mRNA, complete cds Length = 2619 Score = 48.1 bits (24), Expect = 0.033 Identities = 30/32 (93%) Strand = Plus / Minus Query: 510 ccagcgtgactacagaggtagaaatcaaactc 541 ||||| |||||||||||||| ||||||||||| Sbjct: 2300 ccagcatgactacagaggtaaaaatcaaactc 2269
>ref|NM_001001133.1| Bos taurus eukaryotic translation initiation factor 2C, 3 (EIF2C3), mRNA Length = 2619 Score = 48.1 bits (24), Expect = 0.033 Identities = 30/32 (93%) Strand = Plus / Minus Query: 510 ccagcgtgactacagaggtagaaatcaaactc 541 ||||| |||||||||||||| ||||||||||| Sbjct: 2300 ccagcatgactacagaggtaaaaatcaaactc 2269
>gb|AF466202.2| Zea mays putative pol protein gene, partial cds; and putative gag-pol precursor -orf2, putative Fourf gag/pol protein, putative NADP-dependent malic enzyme, putative argonaute protein, putative pinhead protein, putative pol protein, putative gag protein, putative TNP2, r1-B73 proteins, putative genetic modifier, putative S-receptor kinase, putative aldose reductase-related protein, putative glutathione peroxidase, putative glycerol 3-phosphate permease, putative response regulator, and putative 4-coumarate-CoA ligase-like protein genes, complete cds Length = 290350 Score = 48.1 bits (24), Expect = 0.033 Identities = 33/36 (91%) Strand = Plus / Minus Query: 507 attccagcgtgactacagaggtagaaatcaaactcc 542 |||||||| || ||||| |||||||||||||||||| Sbjct: 42651 attccagcatggctacaaaggtagaaatcaaactcc 42616
>ref|XM_532562.2| PREDICTED: Canis familiaris similar to eukaryotic translation initiation factor 2C, 3 isoform a (LOC475336), mRNA Length = 3021 Score = 46.1 bits (23), Expect = 0.13 Identities = 32/35 (91%) Strand = Plus / Minus Query: 507 attccagcgtgactacagaggtagaaatcaaactc 541 |||||||| || ||||||||||| ||||||||||| Sbjct: 2333 attccagcatggctacagaggtaaaaatcaaactc 2299
>ref|NM_021597.1| Rattus norvegicus eukaryotic translation initiation factor 2C, 2 (Eif2c2), mRNA Length = 2626 Score = 46.1 bits (23), Expect = 0.13 Identities = 75/91 (82%), Gaps = 1/91 (1%) Strand = Plus / Minus Query: 461 tcatcccagaggacatggtagtgagctggcctacttgtaccctgggattccagcgtgact 520 ||||||||||| || |||||||| | || | ||||| |||| |||| ||||| ||||| Sbjct: 2324 tcatcccagagcacgtggtagtgggaaggacggcttgtcccct-ggatgccagcatgact 2266 Query: 521 acagaggtagaaatcaaactccgttgggtgg 551 || |||||||| |||||||| ||||||||| Sbjct: 2265 gcacaggtagaagtcaaactcagttgggtgg 2235
>gb|AC067931.16| Homo sapiens chromosome 8, clone RP11-642A1, complete sequence Length = 206466 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Plus Query: 505 ggattccagcgtgactacagaggtagaaatcaaactccgttgggtgg 551 |||| |||||||||||||| |||||||| || ||||| || |||||| Sbjct: 12116 ggatgccagcgtgactacacaggtagaagtcgaactcggtggggtgg 12162
>gb|BC096465.1| Mus musculus eukaryotic translation initiation factor 2C, 2, mRNA (cDNA clone IMAGE:30736929), partial cds Length = 3343 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Minus Query: 505 ggattccagcgtgactacagaggtagaaatcaaactccgttgggtgg 551 |||| ||||||||||| || |||||||| |||||||| || |||||| Sbjct: 2342 ggatgccagcgtgactgcacaggtagaagtcaaactcagtggggtgg 2296
>gb|AC107375.5| Homo sapiens chromosome 8, clone CTA-204B4, complete sequence Length = 115626 Score = 46.1 bits (23), Expect = 0.13 Identities = 41/47 (87%) Strand = Plus / Minus Query: 505 ggattccagcgtgactacagaggtagaaatcaaactccgttgggtgg 551 |||| |||||||||||||| |||||||| || ||||| || |||||| Sbjct: 33596 ggatgccagcgtgactacacaggtagaagtcgaactcggtggggtgg 33550
>gb|AF195534.1|AF195534 Rattus norvegicus GERp95 mRNA, complete cds Length = 2626 Score = 46.1 bits (23), Expect = 0.13 Identities = 75/91 (82%), Gaps = 1/91 (1%) Strand = Plus / Minus Query: 461 tcatcccagaggacatggtagtgagctggcctacttgtaccctgggattccagcgtgact 520 ||||||||||| || |||||||| | || | ||||| |||| |||| ||||| ||||| Sbjct: 2324 tcatcccagagcacgtggtagtgggaaggacggcttgtcccct-ggatgccagcatgact 2266 Query: 521 acagaggtagaaatcaaactccgttgggtgg 551 || |||||||| |||||||| ||||||||| Sbjct: 2265 gcacaggtagaagtcaaactcagttgggtgg 2235
>ref|NM_128262.2| Arabidopsis thaliana AGO4 (ARGONAUTE 4) AT2G27040 (AGO4) mRNA, complete cds Length = 3166 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Minus Query: 507 attccagcgtgactacagaggtagaaatca 536 |||||||||||| |||||||||||||||| Sbjct: 2598 attccagcgtgagcacagaggtagaaatca 2569
>ref|NM_102867.1| Arabidopsis thaliana unknown protein AT1G31290 mRNA, complete cds Length = 3585 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Minus Query: 516 tgactacagaggtagaaatcaaactc 541 ||||||||||||||||||||| |||| Sbjct: 3239 tgactacagaggtagaaatcatactc 3214
>ref|XM_469924.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3579 Score = 44.1 bits (22), Expect = 0.51 Identities = 65/78 (83%), Gaps = 1/78 (1%) Strand = Plus / Minus Query: 457 gttctcatcccagaggacatggtagtgagctggcctacttgtaccctgggattccagcgt 516 ||||||||| | ||||||||||| |||| |||||| || ||||||| | || ||||| | Sbjct: 2172 gttctcatcataaaggacatggtaatgagttggcctgctagtaccct-gtatgccagcat 2114 Query: 517 gactacagaggtagaaat 534 | ||||| |||||||||| Sbjct: 2113 ggctacacaggtagaaat 2096
>ref|XM_777185.1| PREDICTED: Strongylocentrotus purpuratus similar to CG6671-PB, isoform B (LOC576922), mRNA Length = 2931 Score = 44.1 bits (22), Expect = 0.51 Identities = 65/78 (83%), Gaps = 1/78 (1%) Strand = Plus / Minus Query: 464 tcccagaggacatggtagtgagctggcctacttgtaccctgggattccagcgtgactaca 523 ||||||||||| |||||||||| || | ||| || ||||| || || |||||||| || Sbjct: 2651 tcccagaggacgtggtagtgagagggtcgactggtgccctgt-ataccggcgtgactgca 2593 Query: 524 gaggtagaaatcaaactc 541 |||| ||||||||||||| Sbjct: 2592 gaggaagaaatcaaactc 2575
>gb|AY051033.1| Arabidopsis thaliana putative argonaute AGO1 protein (At2g27040) mRNA, complete cds Length = 2806 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Minus Query: 507 attccagcgtgactacagaggtagaaatca 536 |||||||||||| |||||||||||||||| Sbjct: 2468 attccagcgtgagcacagaggtagaaatca 2439
>gb|AY035081.1| Arabidopsis thaliana putative Argonaute (AGO1) protein (At2g27040) mRNA, complete cds Length = 3171 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Minus Query: 507 attccagcgtgactacagaggtagaaatca 536 |||||||||||| |||||||||||||||| Sbjct: 2598 attccagcgtgagcacagaggtagaaatca 2569
>gb|AC005623.3| Arabidopsis thaliana chromosome 2 clone T20P8 map B68, complete sequence Length = 99345 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Plus Query: 507 attccagcgtgactacagaggtagaaatca 536 |||||||||||| |||||||||||||||| Sbjct: 36852 attccagcgtgagcacagaggtagaaatca 36881
>emb|BX820023.1|CNS0A9EM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS63ZA02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 838 Score = 44.1 bits (22), Expect = 0.51 Identities = 28/30 (93%) Strand = Plus / Minus Query: 507 attccagcgtgactacagaggtagaaatca 536 |||||||||||| |||||||||||||||| Sbjct: 312 attccagcgtgagcacagaggtagaaatca 283
>gb|AC007654.2|AC007654 Genomic sequence for Arabidopsis thaliana BAC T19E23 from chromosome I, complete sequence Length = 87618 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Minus Query: 516 tgactacagaggtagaaatcaaactc 541 ||||||||||||||||||||| |||| Sbjct: 32463 tgactacagaggtagaaatcatactc 32438
>dbj|AP005750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0069C14 Length = 150579 Score = 44.1 bits (22), Expect = 0.51 Identities = 40/46 (86%) Strand = Plus / Minus Query: 529 agaaatcaaactccgttgggtggcatatcttcgaatcaacaacagt 574 |||| ||||||||||| || ||||| ||||| || ||||||||||| Sbjct: 59088 agaagtcaaactccgtaggatggcaaatcttggagtcaacaacagt 59043
>gb|AY111249.1| Zea mays CL857_4 mRNA sequence Length = 564 Score = 44.1 bits (22), Expect = 0.51 Identities = 67/82 (81%) Strand = Plus / Minus Query: 317 ggctccatgtagaaccgcgcccggaatgcagccagatgcgcgtaatatgcaggtgggacg 376 ||||||||||| ||||| || ||||| || |||||||| || || |||||||| || ||| Sbjct: 129 ggctccatgtaaaaccgagctcggaaggctgccagatgagcatagtatgcaggaggaacg 70 Query: 377 acggaaacagagcgcgtgcacc 398 | || || ||||| ||||||| Sbjct: 69 attgatactgagcgtgtgcacc 48
>ref|NM_123748.2| Arabidopsis thaliana ZLL (ZWILLE) AT5G43810 (ZLL) mRNA, complete cds Length = 3330 Score = 42.1 bits (21), Expect = 2.0 Identities = 45/53 (84%) Strand = Plus / Minus Query: 209 cagtagaacatcaccctcttcaccttctctttcacagcgggcaaaggcttcac 261 ||||||||||| || |||||||| ||||| |||| || || ||||||||||| Sbjct: 3091 cagtagaacattactctcttcacattctccttcaaggctggtaaaggcttcac 3039
>gb|AF016682.2| Caenorhabditis elegans cosmid T07D3, complete sequence Length = 33706 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 461 tcatcccagaggacatggtagtgag 485 ||||||||||| ||||||||||||| Sbjct: 5289 tcatcccagagcacatggtagtgag 5265
>ref|NM_061436.2| Caenorhabditis elegans Argonaute (plant)-Like Gene family member (alg-2) (alg-2) mRNA, complete cds Length = 2680 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 461 tcatcccagaggacatggtagtgag 485 ||||||||||| ||||||||||||| Sbjct: 2406 tcatcccagagcacatggtagtgag 2382
>ref|NM_182192.2| Caenorhabditis elegans Argonaute (plant)-Like Gene family member (alg-2) (alg-2) mRNA, complete cds Length = 3238 Score = 42.1 bits (21), Expect = 2.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 461 tcatcccagaggacatggtagtgag 485 ||||||||||| ||||||||||||| Sbjct: 2495 tcatcccagagcacatggtagtgag 2471
>dbj|AB026651.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MQD19 Length = 87286 Score = 42.1 bits (21), Expect = 2.0 Identities = 45/53 (84%) Strand = Plus / Minus Query: 209 cagtagaacatcaccctcttcaccttctctttcacagcgggcaaaggcttcac 261 ||||||||||| || |||||||| ||||| |||| || || ||||||||||| Sbjct: 71449 cagtagaacattactctcttcacattctccttcaaggctggtaaaggcttcac 71397
>emb|AJ223508.1|ART223508 Arabidopsis thaliana mRNA for Zwille protein Length = 3323 Score = 42.1 bits (21), Expect = 2.0 Identities = 45/53 (84%) Strand = Plus / Minus Query: 209 cagtagaacatcaccctcttcaccttctctttcacagcgggcaaaggcttcac 261 ||||||||||| || |||||||| ||||| |||| || || ||||||||||| Sbjct: 3091 cagtagaacattactctcttcacattctccttcaaggctggtaaaggcttcac 3039
>gb|AF154272.1|AF154272 Arabidopsis thaliana PINHEAD (PINHEAD) gene, complete cds Length = 5895 Score = 42.1 bits (21), Expect = 2.0 Identities = 45/53 (84%) Strand = Plus / Minus Query: 209 cagtagaacatcaccctcttcaccttctctttcacagcgggcaaaggcttcac 261 ||||||||||| || |||||||| ||||| |||| || || ||||||||||| Sbjct: 5660 cagtagaacattactctcttcacattctccttcaaggctggtaaaggcttcac 5608
>ref|NM_101546.2| Arabidopsis thaliana unknown protein AT1G16850 mRNA, complete cds Length = 747 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 223 cctcttcaccttctctttcacagc 246 |||||||||||| ||||||||||| Sbjct: 441 cctcttcaccttttctttcacagc 418
>gb|AC096684.3| Takifugu rubripes clone 241N7, complete sequence Length = 84793 Score = 40.1 bits (20), Expect = 8.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 510 ccagcgtgactacagaggtagaaatcaaactc 541 ||||||||||| || |||||||| |||||||| Sbjct: 56129 ccagcgtgactgcacaggtagaagtcaaactc 56098
>gb|BT012069.1| Arabidopsis thaliana At1g16850 mRNA sequence Length = 369 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 223 cctcttcaccttctctttcacagc 246 |||||||||||| ||||||||||| Sbjct: 318 cctcttcaccttttctttcacagc 295
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.0 Identities = 41/48 (85%) Strand = Plus / Plus Query: 457 gttctcatcccagaggacatggtagtgagctggcctacttgtaccctg 504 ||||||||| | ||||||||||| |||| |||||| || |||||||| Sbjct: 33068815 gttctcatcgtaaaggacatggtaatgagttggcctgctagtaccctg 33068862 Score = 40.1 bits (20), Expect = 8.0 Identities = 41/48 (85%) Strand = Plus / Minus Query: 457 gttctcatcccagaggacatggtagtgagctggcctacttgtaccctg 504 ||||||||| | ||||||||||| |||| |||||| || |||||||| Sbjct: 32515104 gttctcatcataaaggacatggtaatgagttggcctgctagtaccctg 32515057
>ref|XM_977151.1| PREDICTED: Mus musculus absent in melanoma 1-like, transcript variant 4 (Aim1l), mRNA Length = 4761 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 cttctctttcacagcgggca 251 |||||||||||||||||||| Sbjct: 1295 cttctctttcacagcgggca 1276
>ref|XM_131754.7| PREDICTED: Mus musculus absent in melanoma 1-like, transcript variant 1 (Aim1l), mRNA Length = 4761 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 cttctctttcacagcgggca 251 |||||||||||||||||||| Sbjct: 1295 cttctctttcacagcgggca 1276
>ref|XM_915853.2| PREDICTED: Mus musculus absent in melanoma 1-like, transcript variant 5 (Aim1l), mRNA Length = 4761 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 cttctctttcacagcgggca 251 |||||||||||||||||||| Sbjct: 1295 cttctctttcacagcgggca 1276
>gb|AY113974.1| Arabidopsis thaliana unknown protein (At1g16850) mRNA, complete cds Length = 490 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 223 cctcttcaccttctctttcacagc 246 |||||||||||| ||||||||||| Sbjct: 408 cctcttcaccttttctttcacagc 385
>gb|AY080886.1| Arabidopsis thaliana unknown protein (At1g16850) mRNA, complete cds Length = 714 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 223 cctcttcaccttctctttcacagc 246 |||||||||||| ||||||||||| Sbjct: 441 cctcttcaccttttctttcacagc 418
>gb|DQ374082.1| Beta vulgaris chromosome 9 clone BAC123 genomic sequence Length = 5939 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 gatgcgcgtaatatgcaggt 370 |||||||||||||||||||| Sbjct: 1739 gatgcgcgtaatatgcaggt 1720
>dbj|AK145690.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched library, clone:I1C0030D16 product:absent in melanoma 1-like, full insert sequence Length = 4765 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 cttctctttcacagcgggca 251 |||||||||||||||||||| Sbjct: 1299 cttctctttcacagcgggca 1280
>gb|AC154351.2| Mus musculus BAC clone RP24-536C5 from chromosome 17, complete sequence Length = 188013 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 157 ctacagtgttaggcacataa 176 |||||||||||||||||||| Sbjct: 32809 ctacagtgttaggcacataa 32828
>gb|AF325003.2|AF325003 Arabidopsis thaliana At1g16880 (At1g16880/F17F16.7) mRNA, complete cds Length = 700 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 223 cctcttcaccttctctttcacagc 246 |||||||||||| ||||||||||| Sbjct: 441 cctcttcaccttttctttcacagc 418
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.0 Identities = 41/48 (85%) Strand = Plus / Plus Query: 457 gttctcatcccagaggacatggtagtgagctggcctacttgtaccctg 504 ||||||||| | ||||||||||| |||| |||||| || |||||||| Sbjct: 33159325 gttctcatcgtaaaggacatggtaatgagttggcctgctagtaccctg 33159372 Score = 40.1 bits (20), Expect = 8.0 Identities = 41/48 (85%) Strand = Plus / Minus Query: 457 gttctcatcccagaggacatggtagtgagctggcctacttgtaccctg 504 ||||||||| | ||||||||||| |||| |||||| || |||||||| Sbjct: 32605614 gttctcatcataaaggacatggtaatgagttggcctgctagtaccctg 32605567
>emb|BX818626.1|CNS0ACLJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL88ZH09 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 649 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 223 cctcttcaccttctctttcacagc 246 |||||||||||| ||||||||||| Sbjct: 396 cctcttcaccttttctttcacagc 373
>emb|BX817885.1|CNS0ACK5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL47ZE05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 724 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 223 cctcttcaccttctctttcacagc 246 |||||||||||| ||||||||||| Sbjct: 418 cctcttcaccttttctttcacagc 395
>gb|AC104321.7| Oryza sativa chromosome 3 BAC OSJNBa0052F07 genomic sequence, complete sequence Length = 139823 Score = 40.1 bits (20), Expect = 8.0 Identities = 41/48 (85%) Strand = Plus / Minus Query: 457 gttctcatcccagaggacatggtagtgagctggcctacttgtaccctg 504 ||||||||| | ||||||||||| |||| |||||| || |||||||| Sbjct: 54493 gttctcatcgtaaaggacatggtaatgagttggcctgctagtaccctg 54446
>gb|AC087096.11| Oryza sativa chromosome 3 BAC OSJNBa0087O09 genomic sequence, complete sequence Length = 119134 Score = 40.1 bits (20), Expect = 8.0 Identities = 41/48 (85%) Strand = Plus / Minus Query: 457 gttctcatcccagaggacatggtagtgagctggcctacttgtaccctg 504 ||||||||| | ||||||||||| |||| |||||| || |||||||| Sbjct: 48553 gttctcatcataaaggacatggtaatgagttggcctgctagtaccctg 48506
>gb|AC026237.4|AC026237 Arabidopsis thaliana chromosome I BAC F17F16 genomic sequence, complete sequence Length = 90498 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 223 cctcttcaccttctctttcacagc 246 |||||||||||| ||||||||||| Sbjct: 35823 cctcttcaccttttctttcacagc 35800
>gb|AC051629.3|AC051629 Arabidopsis thaliana chromosome I BAC F6I1 genomic sequence, complete sequence Length = 93677 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 223 cctcttcaccttctctttcacagc 246 |||||||||||| ||||||||||| Sbjct: 82520 cctcttcaccttttctttcacagc 82497
>emb|AL670680.6| Mouse DNA sequence from clone RP23-314D24 on chromosome 4, complete sequence Length = 150897 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 cttctctttcacagcgggca 251 |||||||||||||||||||| Sbjct: 94398 cttctctttcacagcgggca 94379 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,388,810 Number of Sequences: 3902068 Number of extensions: 3388810 Number of successful extensions: 54901 Number of sequences better than 10.0: 109 Number of HSP's better than 10.0 without gapping: 109 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 54557 Number of HSP's gapped (non-prelim): 314 length of query: 589 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 566 effective length of database: 17,143,297,704 effective search space: 9703106500464 effective search space used: 9703106500464 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
