ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags12e05 |
|---|---|
| Clone Library Name | barley_pub |
>SDB84_MOUSE (Q9CQE7) Serologically defined breast cancer antigen NY-BR-84| homolog Length = 383 Score = 130 bits (326), Expect = 5e-30 Identities = 65/127 (51%), Positives = 87/127 (68%), Gaps = 2/127 (1%) Frame = -3 Query: 679 VVNPLDGVEWKQEQTTGLTGMYQYFVKVVPTIYTDIRGRKIHSNQFSVTEHFREAIGL-- 506 +VNPLD Q + M+QYFVKVVPT+Y + G + +NQFSVT H + A GL Sbjct: 258 IVNPLDHTNVTAPQASM---MFQYFVKVVPTVYMKVDGEVLRTNQFSVTRHEKVANGLLG 314 Query: 505 PRPPPGVYFFYEFSPIQVDFTEENTSLLHFLTNICAIVGGIFTVAGIIDSFVYHGHRAIK 326 + PGV+ YE SP+ V TE++ S HFLT +CAI+GG+FTVAG+IDS +YH RAI+ Sbjct: 315 DQGLPGVFVLYELSPMMVKLTEKHRSFTHFLTGVCAIIGGMFTVAGLIDSLIYHSARAIQ 374 Query: 325 KKMEIGK 305 KK+++GK Sbjct: 375 KKIDLGK 381
>SDB84_HUMAN (Q9Y282) Serologically defined breast cancer antigen NY-BR-84| Length = 383 Score = 130 bits (326), Expect = 5e-30 Identities = 65/127 (51%), Positives = 87/127 (68%), Gaps = 2/127 (1%) Frame = -3 Query: 679 VVNPLDGVEWKQEQTTGLTGMYQYFVKVVPTIYTDIRGRKIHSNQFSVTEHFREAIGL-- 506 +VNPLD Q + M+QYFVKVVPT+Y + G + +NQFSVT H + A GL Sbjct: 258 IVNPLDHTNVTAPQASM---MFQYFVKVVPTVYMKVDGEVLRTNQFSVTRHEKVANGLLG 314 Query: 505 PRPPPGVYFFYEFSPIQVDFTEENTSLLHFLTNICAIVGGIFTVAGIIDSFVYHGHRAIK 326 + PGV+ YE SP+ V TE++ S HFLT +CAI+GG+FTVAG+IDS +YH RAI+ Sbjct: 315 DQGLPGVFVLYELSPMMVKLTEKHRSFTHFLTGVCAIIGGMFTVAGLIDSLIYHSARAIQ 374 Query: 325 KKMEIGK 305 KK+++GK Sbjct: 375 KKIDLGK 381
>ERGI1_XENLA (Q6NS19) Endoplasmic reticulum-Golgi intermediate compartment| protein 1 (ER-Golgi intermediate compartment 32 kDa protein) (ERGIC-32) Length = 290 Score = 88.2 bits (217), Expect = 2e-17 Identities = 43/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%) Frame = -3 Query: 616 YQYFVKVVPTIYTDIRGRKIHSNQFSVTEHFREAIG-LPRPPPGVYFFYEFSPIQVDFTE 440 + Y +K+VPT+Y D+ G++ S Q++V A R P ++F Y+ SPI V +TE Sbjct: 185 HDYVLKIVPTVYEDLNGKQQFSYQYTVANKAYVAYSHTGRVVPAIWFRYDLSPITVKYTE 244 Query: 439 ENTSLLHFLTNICAIVGGIFTVAGIIDSFVYHGHRAIKKKMEIGK 305 + F+T +CAI+GG FTVAGI+DSF++ A KK+++GK Sbjct: 245 RRQPMYRFITTVCAIIGGTFTVAGILDSFIFTASEA-WKKIQLGK 288
>ERGI1_MOUSE (Q9DC16) Endoplasmic reticulum-Golgi intermediate compartment| protein 1 (ER-Golgi intermediate compartment 32 kDa protein) (ERGIC-32) Length = 290 Score = 84.7 bits (208), Expect = 2e-16 Identities = 45/112 (40%), Positives = 67/112 (59%), Gaps = 1/112 (0%) Frame = -3 Query: 637 TTGLTGMYQYFVKVVPTIYTDIRGRKIHSNQFSVTEHFREAIG-LPRPPPGVYFFYEFSP 461 T+ + Y +K+VPT+Y D G++ +S Q++V A R P ++F Y+ SP Sbjct: 178 TSNPLASHDYILKIVPTVYEDKSGKQRYSYQYTVANKEYVAYSHTGRIIPAIWFRYDLSP 237 Query: 460 IQVDFTEENTSLLHFLTNICAIVGGIFTVAGIIDSFVYHGHRAIKKKMEIGK 305 I V +TE L F+T ICAI+GG FTVAGI+DS ++ A KK+++GK Sbjct: 238 ITVKYTERRQPLYRFITTICAIIGGTFTVAGILDSCIFTASEA-WKKIQLGK 288
>ERGI1_HUMAN (Q969X5) Endoplasmic reticulum-Golgi intermediate compartment| protein 1 (ER-Golgi intermediate compartment 32 kDa protein) (ERGIC-32) Length = 290 Score = 84.7 bits (208), Expect = 2e-16 Identities = 45/112 (40%), Positives = 67/112 (59%), Gaps = 1/112 (0%) Frame = -3 Query: 637 TTGLTGMYQYFVKVVPTIYTDIRGRKIHSNQFSVTEHFREAIG-LPRPPPGVYFFYEFSP 461 T+ + Y +K+VPT+Y D G++ +S Q++V A R P ++F Y+ SP Sbjct: 178 TSNPLASHDYILKIVPTVYEDKSGKQRYSYQYTVANKEYVAYSHTGRIIPAIWFRYDLSP 237 Query: 460 IQVDFTEENTSLLHFLTNICAIVGGIFTVAGIIDSFVYHGHRAIKKKMEIGK 305 I V +TE L F+T ICAI+GG FTVAGI+DS ++ A KK+++GK Sbjct: 238 ITVKYTERRQPLYRFITTICAIIGGTFTVAGILDSCIFTASEA-WKKIQLGK 288
>ERGI1_BRARE (Q4V8Y6) Endoplasmic reticulum-Golgi intermediate compartment| protein 1 (ER-Golgi intermediate compartment 32 kDa protein) (ERGIC-32) Length = 290 Score = 83.2 bits (204), Expect = 7e-16 Identities = 44/105 (41%), Positives = 64/105 (60%), Gaps = 1/105 (0%) Frame = -3 Query: 616 YQYFVKVVPTIYTDIRGRKIHSNQFSVTEHFREAIG-LPRPPPGVYFFYEFSPIQVDFTE 440 + Y +K+VPT+Y ++ G++ S Q++V A R P ++F Y+ SPI V +TE Sbjct: 185 HDYILKIVPTVYEELGGKQRFSYQYTVANKEYVAYSHTGRIIPAIWFRYDLSPITVKYTE 244 Query: 439 ENTSLLHFLTNICAIVGGIFTVAGIIDSFVYHGHRAIKKKMEIGK 305 F+T ICAI+GG FTVAGIIDS ++ A KK++IGK Sbjct: 245 RRRPFYRFITTICAIIGGTFTVAGIIDSCIFTASEA-WKKIQIGK 288
>YAE2_YEAST (P39727) Hypothetical 46.3 kDa protein in PTA1-CDC24 intergenic| region Length = 415 Score = 55.5 bits (132), Expect = 2e-07 Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 12/127 (9%) Frame = -3 Query: 673 NPLDGVEWKQEQTTGLTGMYQYFVKVVPTIYTDIRGRKIHSNQFSVTEHFREAIG----- 509 +PLDG + ++ T + YF K+VPT Y + I + QFS T H R G Sbjct: 284 SPLDGRQVFPDRNTHFH-QFSYFAKIVPTRYEYLDNVVIETAQFSATFHSRPLAGGRDKD 342 Query: 508 ------LPRPPPGVYFFYEFSPIQVDFTEEN-TSLLHFLTNICAIVGGIFTVAGIIDSFV 350 + PG++ F+E SP++V E++ + F+ N +GG+ V ++D Sbjct: 343 HPNTLHVRGGIPGMFVFFEMSPLKVINKEQHGQTWSGFILNCITSIGGVLAVGTVMDKLF 402 Query: 349 YHGHRAI 329 Y R+I Sbjct: 403 YKAQRSI 409
>YMG7_YEAST (Q04651) Hypothetical 40.7 kDa protein in DAK1-ORC1 intergenic| region Length = 352 Score = 50.4 bits (119), Expect = 5e-06 Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 3/96 (3%) Frame = -3 Query: 673 NPLDGVEWKQEQTTGLTGMYQYFVKVVPTIYTDIRGRKIHSNQFSVTEH---FREAIGLP 503 NPLD + Q LT Y Y+ VVPT++ + G ++ +NQ+SV ++ +++ Sbjct: 217 NPLDNTA-QFNQDEPLT-TYVYYTSVVPTLFKKL-GAEVDTNQYSVNDYRYLYKDVAAKG 273 Query: 502 RPPPGVYFFYEFSPIQVDFTEENTSLLHFLTNICAI 395 PG++F Y F P+ + ++ S + FL + AI Sbjct: 274 DKMPGIFFKYNFEPLSIVVSDVRLSFIQFLVRLVAI 309
>YAI8_SCHPO (Q09895) Hypothetical protein C24B11.08c in chromosome I| Length = 390 Score = 46.2 bits (108), Expect = 9e-05 Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 14/123 (11%) Frame = -3 Query: 673 NPLDGVEWKQEQTTGLTGMYQYFVKVVPTIYTDIRGRK--IHSNQFSVTEHFREAIGLPR 500 NPLDG K + Y+YF+K V + + I +N+++VT+H R G Sbjct: 263 NPLDGTVKK---VSTADYRYEYFIKCVSYQFMPLSKSTLPIDTNKYAVTQHERSIRGGRE 319 Query: 499 PP-----------PGVYFFYEFSPIQV-DFTEENTSLLHFLTNICAIVGGIFTVAGIIDS 356 PGV+F ++ SP++V + + FL+N+ A++GG T+A +D Sbjct: 320 EKVPTHVNFHGGIPGVWFQFDISPMRVIERQVRGNTFGGFLSNVLALLGGCVTLASFVDR 379 Query: 355 FVY 347 Y Sbjct: 380 GYY 382
>ZN578_HUMAN (Q96N58) Zinc finger protein 578| Length = 365 Score = 35.4 bits (80), Expect = 0.16 Identities = 23/71 (32%), Positives = 32/71 (45%) Frame = +2 Query: 329 DCTMTMVHK*IYDASHGEYSSNNRTYVCQEVKKRCVFFSKINLNWRKFVEEIYTGRGPWK 508 DC +H+ A H + ++Y C+E + VF K NL K I+TG P+K Sbjct: 206 DCVKAFIHQSSL-ARHHRLHTGEKSYKCEECDR--VFSQKSNLERHKI---IHTGEKPYK 259 Query: 509 ANCFSKVLRHR 541 N K HR Sbjct: 260 CNECHKTFSHR 270
>ZN559_HUMAN (Q9BR84) Zinc finger protein 559| Length = 538 Score = 33.1 bits (74), Expect = 0.80 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 7/66 (10%) Frame = +2 Query: 368 ASHGEYSSNNRTYVCQEVKKRCVFFSKINLNWRKFVEEIYTGRGPWKANCFSK------- 526 A H + + YVC E K FSK+N++ R ++TG P++ N K Sbjct: 285 AKHIRLRTRGKHYVCNECGKEFTCFSKLNIHIR-----VHTGEKPYECNKCGKAFTDSSG 339 Query: 527 VLRHRK 544 +++HR+ Sbjct: 340 LIKHRR 345
>ZN671_HUMAN (Q8TAW3) Zinc finger protein 671| Length = 556 Score = 32.3 bits (72), Expect = 1.4 Identities = 16/58 (27%), Positives = 27/58 (46%) Frame = +2 Query: 374 HGEYSSNNRTYVCQEVKKRCVFFSKINLNWRKFVEEIYTGRGPWKANCFSKVLRHRKL 547 H + R Y C E K S +N++WR + R +C SK+++H+K+ Sbjct: 415 HQRTHTGERPYECSECGKAFSQSSHLNVHWRIHSSDYECSRCGKAFSCISKLIQHQKV 472
>ZN624_HUMAN (Q9P2J8) Zinc finger protein 624| Length = 739 Score = 31.6 bits (70), Expect = 2.3 Identities = 17/58 (29%), Positives = 26/58 (44%) Frame = +2 Query: 362 YDASHGEYSSNNRTYVCQEVKKRCVFFSKINLNWRKFVEEIYTGRGPWKANCFSKVLR 535 Y H + + Y C+E K C+ S++ L+ R I+TG P+K K R Sbjct: 640 YLTVHWRTHTGEKPYTCKECGKGCITLSQLTLHQR-----IHTGERPYKCEECGKAFR 692
>ZNF83_HUMAN (P51522) Zinc finger protein 83 (Zinc finger protein HPF1)| Length = 428 Score = 30.8 bits (68), Expect = 4.0 Identities = 18/58 (31%), Positives = 25/58 (43%) Frame = +2 Query: 368 ASHGEYSSNNRTYVCQEVKKRCVFFSKINLNWRKFVEEIYTGRGPWKANCFSKVLRHR 541 A H + + Y C E K S + +WR I+TG P+K N KV H+ Sbjct: 189 AQHQRIHTGEKPYKCNECGKVFSHKSSLVNHWR-----IHTGEKPYKCNECGKVFSHK 241
>VIRA_AGRT9 (P10799) Wide host range virA protein (EC 2.7.13.3) (WHR virA)| Length = 829 Score = 30.4 bits (67), Expect = 5.2 Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 2/99 (2%) Frame = -3 Query: 598 VVPTIYTDIRGRKIHSNQFSVTEHFREAIGLPRP--PPGVYFFYEFSPIQVDFTEENTSL 425 ++ I T R ++ FSV+E E L R PP + + F +Q L Sbjct: 517 IIDQILTLSRKQERMIKPFSVSELVTEIAPLLRMALPPNIELSFRFDQMQSVIEGSPLEL 576 Query: 424 LHFLTNICAIVGGIFTVAGIIDSFVYHGHRAIKKKMEIG 308 L NIC T G ID + +KK + G Sbjct: 577 QQVLINICKNASQAMTANGQIDIIISQAFLPVKKILAHG 615
>VIRAW_AGRTU (P07168) Wide host range virA protein (EC 2.7.13.3) (WHR virA)| Length = 829 Score = 30.4 bits (67), Expect = 5.2 Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 2/99 (2%) Frame = -3 Query: 598 VVPTIYTDIRGRKIHSNQFSVTEHFREAIGLPRP--PPGVYFFYEFSPIQVDFTEENTSL 425 ++ I T R ++ FSV+E E L R PP + + F +Q L Sbjct: 517 IIDQILTLSRKQERMIKPFSVSELVTEIAPLLRMALPPNIELSFRFDQMQSVIEGSPLEL 576 Query: 424 LHFLTNICAIVGGIFTVAGIIDSFVYHGHRAIKKKMEIG 308 L NIC T G ID + +KK + G Sbjct: 577 QQVLINICKNASQAMTANGQIDIIISQAFLPVKKILAHG 615
>KR18_HUMAN (Q9HCG1) Zinc finger protein Kr18 (HKr18)| Length = 818 Score = 30.4 bits (67), Expect = 5.2 Identities = 17/60 (28%), Positives = 26/60 (43%) Frame = +2 Query: 371 SHGEYSSNNRTYVCQEVKKRCVFFSKINLNWRKFVEEIYTGRGPWKANCFSKVLRHRKLI 550 SH S + Y C E K S + ++ + I+TG P+K + KV RH + Sbjct: 274 SHRRIHSGEKPYKCSECGKTFTVRSNLTIH-----QVIHTGEKPYKCHECGKVFRHNSYL 328
>ZN678_HUMAN (Q5SXM1) Zinc finger protein 678| Length = 525 Score = 30.4 bits (67), Expect = 5.2 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 7/66 (10%) Frame = +2 Query: 371 SHGEYSSNNRTYVCQEVKKRCVFFSKINLNWRKFVEEIYTGRGPWKA-------NCFSKV 529 SH + S + Y C+E K FS + + R I+TG P+K N FS + Sbjct: 198 SHKKIHSGEKPYPCEECGKAFTQFSNLTQHKR-----IHTGEKPYKCKECCKAFNKFSNL 252 Query: 530 LRHRKL 547 +H+++ Sbjct: 253 TQHKRI 258
>ZN197_HUMAN (O14709) Zinc finger protein 197 (ZnF20)| Length = 1029 Score = 30.4 bits (67), Expect = 5.2 Identities = 20/57 (35%), Positives = 27/57 (47%) Frame = +2 Query: 374 HGEYSSNNRTYVCQEVKKRCVFFSKINLNWRKFVEEIYTGRGPWKANCFSKVLRHRK 544 H + + Y C + +K F SK NL + I+TG P+ N SKV R RK Sbjct: 920 HQRMHTGEKPYECDKCRKS--FTSKRNLVGH---QRIHTGEKPYGCNDCSKVFRQRK 971
>ZIM3_HUMAN (Q96PE6) Zinc finger imprinted 3| Length = 472 Score = 29.6 bits (65), Expect = 8.9 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 7/67 (10%) Frame = +2 Query: 371 SHGEYSSNNRTYVCQEVKKRCVFFSKINLNWRKFVEEIYTGRGPWKANCFSK-------V 529 SH + S RTY C E K F K+NL+ K + +TG+ P+ + K + Sbjct: 408 SHQKTHSGERTYRCSECGK--TFIRKLNLSLHK---KTHTGQKPYGCSECGKAFADRSYL 462 Query: 530 LRHRKLI 550 +RH+K I Sbjct: 463 VRHQKRI 469 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 100,558,738 Number of Sequences: 219361 Number of extensions: 2150601 Number of successful extensions: 5420 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 5171 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5410 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6712189044 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
