Clone Information

BLAST Search Result

Clone Name	rbags12e02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_465260.1\| Oryza sativa (japonica cultivar-group), mRNA	335	1e-88
2	gb\|AY104587.1\| Zea mays PCO104634 mRNA sequence	293	4e-76
3	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	224	3e-55
4	dbj\|AP004024.3\| Oryza sativa (japonica cultivar-group) genomic D...	224	3e-55
5	dbj\|AP004798.2\| Oryza sativa (japonica cultivar-group) genomic D...	224	3e-55
6	ref\|NM_124867.2\| Arabidopsis thaliana unknown protein AT5G54855 ...	86	2e-13
7	gb\|AY093718.1\| Arabidopsis thaliana AT1g27100/T7N9_16 mRNA, comp...	86	2e-13
8	gb\|AF410270.1\|AF410270 Arabidopsis thaliana unknown protein mRNA...	86	2e-13
9	dbj\|AK118946.1\| Arabidopsis thaliana At5g54855 mRNA for unknown ...	86	2e-13
10	dbj\|AB005232.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	82	3e-12
11	gb\|AY088675.1\| Arabidopsis thaliana clone 9159 mRNA, complete se...	78	4e-11
12	emb\|BX830033.1\|CNS0A053 Arabidopsis thaliana Full-length cDNA Co...	52	0.002
13	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	46	0.15
14	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.15
15	gb\|AC134230.2\| Oryza sativa (japonica cultivar-group) chromosome...	46	0.15
16	emb\|BX248354.1\| Corynebacterium diphtheriae gravis NCTC13129, co...	44	0.61
17	gb\|AY364845.1\| Virus PhiCh1 pBgB51 capsid protein, int1, and cap...	42	2.4
18	gb\|AY364843.1\| Virus PhiCh1 pBgB5 ORF34-5, integrase, and ORF36-...	42	2.4
19	gb\|AF440695.1\| Virus PhiCh1, complete genome	42	2.4
20	ref\|XM_959884.1\| Neurospora crassa OR74A hypothetical protein (N...	40	9.5
21	ref\|XM_330553.1\| Neurospora crassa OR74A hypothetical protein (N...	40	9.5
22	gb\|AC099604.4\| Mus musculus chromosome 1, clone RP23-335B22, com...	40	9.5
23	emb\|AM039952.1\| Xanthomonas campestris pv. vesicatoria complete ...	40	9.5
24	emb\|AL109838.11\|HSDJ796I8 Human DNA sequence from clone RP4-796I...	40	9.5
25	emb\|X75952.1\|SGHRDBSPR S.griseus hrdB and sprC genes for sigma f...	40	9.5
26	emb\|AL939125.1\|SCO939125 Streptomyces coelicolor A3(2) complete ...	40	9.5
27	emb\|AJ003022.1\|SCA32WHIH Streptomyces coelicolor whiH gene	40	9.5
28	gb\|AE012056.1\| Xanthomonas axonopodis pv. citri str. 306, secti...	40	9.5
29	gb\|AE012520.1\| Xanthomonas campestris pv. campestris str. ATCC 3...	40	9.5
30	gb\|AC135209.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	9.5
31	gb\|CP000050.1\| Xanthomonas campestris pv. campestris str. 8004, ...	40	9.5
32	gb\|AC120182.8\| Mus musculus chromosome 1, clone RP24-501C2, comp...	40	9.5
33	dbj\|BA000040.2\| Bradyrhizobium japonicum USDA 110 DNA, complete ...	40	9.5
34	gb\|AC008572.6\|AC008572 Homo sapiens chromosome 5 clone CTC-551A1...	40	9.5
35	gb\|AC093475.9\| Mus musculus chromosome 1, clone RP23-54K22, comp...	40	9.5
36	gb\|AY106131.1\| Zea mays PCO096827 mRNA sequence	40	9.5
37	gb\|AC122448.3\| Mus musculus BAC clone RP24-243B16 from 15, compl...	40	9.5

>ref|XM_465260.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 468

 Score =  335 bits (169), Expect = 1e-88
 Identities = 307/353 (86%)
 Strand = Plus / Minus

                                                                       
Query: 197 ttggcaggcttgtacaggaatgccttaacgctgtgcgagttccctgagtgtttgttgtat 256
           |||||||||||||| ||||| | ||| ||| |||| ||||| |||||  | ||| |||||
Sbjct: 446 ttggcaggcttgtagaggaacgtcttgacggtgtgagagtttcctgaaggcttgctgtat 387

                                                                       
Query: 257 gtgaacttgaccccagagtgtgcatcgcccctcctcgtgcaatgctggtggaagctgctg 316
           |||||||||||||||||||||| ||| |||||| | |||||||||||||| |||||||||
Sbjct: 386 gtgaacttgaccccagagtgtgtatcacccctcttagtgcaatgctggtgaaagctgctg 327

                                                                       
Query: 317 atgggcctcgccaggcacgagtcccaccggtcgctctccggcatcgtctccgcaacactg 376
           |||||||| |||| ||| || ||||| ||||| ||||| |||||||||||||||||| ||
Sbjct: 326 atgggccttgccaagcatgactcccaacggtcactctctggcatcgtctccgcaacaatg 267

                                                                       
Query: 377 tagatgccctcgtagtttgtgaatgcctggtagttgatgacctcaccagatttcgtaatg 436
           ||||  |||| | |||||||||| |||||||||||||| || ||||||||| |||| |||
Sbjct: 266 tagacacccttggagtttgtgaaggcctggtagttgataacttcaccagatctcgtgatg 207

                                                                       
Query: 437 cacagaacagcaacctcagcgccttcgagggcgtggtcctcgggcccgatggcagagtcg 496
           || || || |||||||| || ||||||||| ||||||||||||| |||||||| | ||| 
Sbjct: 206 cagaggacggcaacctcggcaccttcgaggacgtggtcctcggggccgatggcggcgtcc 147

                                                                
Query: 497 gcgcagacgtcgcagacgacgcggccgcggatctcccccgtccacgcttcggc 549
            |||||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 146 ccgcagacgtcgcagacgacgtggccgcggatctcccccgtccacgcctcggc 94

to top

>gb|AY104587.1| Zea mays PCO104634 mRNA sequence
          Length = 903

 Score =  293 bits (148), Expect = 4e-76
 Identities = 301/352 (85%)
 Strand = Plus / Minus

                                                                       
Query: 198 tggcaggcttgtacaggaatgccttaacgctgtgcgagttccctgagtgtttgttgtatg 257
           |||| |||||||| ||||| | ||| ||| |||||| |||||| ||   ||||||||| |
Sbjct: 599 tggccggcttgtagaggaaaggcttgacggtgtgcgggttcccagacgatttgttgtaag 540

                                                                       
Query: 258 tgaacttgaccccagagtgtgcatcgcccctcctcgtgcaatgctggtggaagctgctga 317
           ||||||| ||||||||||| ||||| |||| ||  ||||||||  | ||||||||||| |
Sbjct: 539 tgaacttcaccccagagtgagcatcaccccgccgtgtgcaatgtagatggaagctgctca 480

                                                                       
Query: 318 tgggcctcgccaggcacgagtcccaccggtcgctctccggcatcgtctccgcaacactgt 377
           | |||||||||| |||||||||||||| ||||||||||||||| ||||| || ||| | |
Sbjct: 479 taggcctcgccaagcacgagtcccacctgtcgctctccggcatagtctcggcgacagtat 420

                                                                       
Query: 378 agatgccctcgtagtttgtgaatgcctggtagttgatgacctcaccagatttcgtaatgc 437
           | | ||||| | |||||||||| || || |||||||| |||||||||||||| || ||||
Sbjct: 419 acacgcccttggagtttgtgaaggcttgatagttgataacctcaccagattttgtgatgc 360

                                                                       
Query: 438 acagaacagcaacctcagcgccttcgagggcgtggtcctcgggcccgatggcagagtcgg 497
           | || ||||||||||| || |||||||||||||||||||| || |||||||| | |||| 
Sbjct: 359 agaggacagcaacctccgcaccttcgagggcgtggtcctccgggccgatggctgcgtcgc 300

                                                               
Query: 498 cgcagacgtcgcagacgacgcggccgcggatctcccccgtccacgcttcggc 549
           ||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 299 cgcagacgtcgcagacgacgcggccgcggatctcccccgtccaagcctcggc 248

to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  224 bits (113), Expect = 3e-55
 Identities = 221/257 (85%)
 Strand = Plus / Plus

                                                                            
Query: 197      ttggcaggcttgtacaggaatgccttaacgctgtgcgagttccctgagtgtttgttgtat 256
                |||||||||||||| ||||| | ||| ||| |||| ||||| |||||  | ||| |||||
Sbjct: 12629424 ttggcaggcttgtagaggaacgtcttgacggtgtgagagtttcctgaaggcttgctgtat 12629483

                                                                            
Query: 257      gtgaacttgaccccagagtgtgcatcgcccctcctcgtgcaatgctggtggaagctgctg 316
                |||||||||||||||||||||| ||| |||||| | |||||||||||||| |||||||||
Sbjct: 12629484 gtgaacttgaccccagagtgtgtatcacccctcttagtgcaatgctggtgaaagctgctg 12629543

                                                                            
Query: 317      atgggcctcgccaggcacgagtcccaccggtcgctctccggcatcgtctccgcaacactg 376
                |||||||| |||| ||| || ||||| ||||| ||||| |||||||||||||||||| ||
Sbjct: 12629544 atgggccttgccaagcatgactcccaacggtcactctctggcatcgtctccgcaacaatg 12629603

                                                                            
Query: 377      tagatgccctcgtagtttgtgaatgcctggtagttgatgacctcaccagatttcgtaatg 436
                ||||  |||| | |||||||||| |||||||||||||| || ||||||||| |||| |||
Sbjct: 12629604 tagacacccttggagtttgtgaaggcctggtagttgataacttcaccagatctcgtgatg 12629663

                                 
Query: 437      cacagaacagcaacctc 453
                || || || ||||||||
Sbjct: 12629664 cagaggacggcaacctc 12629680



 Score =  119 bits (60), Expect = 1e-23
 Identities = 84/92 (91%)
 Strand = Plus / Plus

                                                                            
Query: 458      ccttcgagggcgtggtcctcgggcccgatggcagagtcggcgcagacgtcgcagacgacg 517
                ||||||||| ||||||||||||| |||||||| | |||  ||||||||||||||||||||
Sbjct: 12632346 ccttcgaggacgtggtcctcggggccgatggcggcgtccccgcagacgtcgcagacgacg 12632405

                                                
Query: 518      cggccgcggatctcccccgtccacgcttcggc 549
                 ||||||||||||||||||||||||| |||||
Sbjct: 12632406 tggccgcggatctcccccgtccacgcctcggc 12632437

to top

>dbj|AP004024.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1134_B09
          Length = 105247

 Score =  224 bits (113), Expect = 3e-55
 Identities = 221/257 (85%)
 Strand = Plus / Plus

                                                                         
Query: 197   ttggcaggcttgtacaggaatgccttaacgctgtgcgagttccctgagtgtttgttgtat 256
             |||||||||||||| ||||| | ||| ||| |||| ||||| |||||  | ||| |||||
Sbjct: 26483 ttggcaggcttgtagaggaacgtcttgacggtgtgagagtttcctgaaggcttgctgtat 26542

                                                                         
Query: 257   gtgaacttgaccccagagtgtgcatcgcccctcctcgtgcaatgctggtggaagctgctg 316
             |||||||||||||||||||||| ||| |||||| | |||||||||||||| |||||||||
Sbjct: 26543 gtgaacttgaccccagagtgtgtatcacccctcttagtgcaatgctggtgaaagctgctg 26602

                                                                         
Query: 317   atgggcctcgccaggcacgagtcccaccggtcgctctccggcatcgtctccgcaacactg 376
             |||||||| |||| ||| || ||||| ||||| ||||| |||||||||||||||||| ||
Sbjct: 26603 atgggccttgccaagcatgactcccaacggtcactctctggcatcgtctccgcaacaatg 26662

                                                                         
Query: 377   tagatgccctcgtagtttgtgaatgcctggtagttgatgacctcaccagatttcgtaatg 436
             ||||  |||| | |||||||||| |||||||||||||| || ||||||||| |||| |||
Sbjct: 26663 tagacacccttggagtttgtgaaggcctggtagttgataacttcaccagatctcgtgatg 26722

                              
Query: 437   cacagaacagcaacctc 453
             || || || ||||||||
Sbjct: 26723 cagaggacggcaacctc 26739



 Score =  119 bits (60), Expect = 1e-23
 Identities = 84/92 (91%)
 Strand = Plus / Plus

                                                                         
Query: 458   ccttcgagggcgtggtcctcgggcccgatggcagagtcggcgcagacgtcgcagacgacg 517
             ||||||||| ||||||||||||| |||||||| | |||  ||||||||||||||||||||
Sbjct: 29405 ccttcgaggacgtggtcctcggggccgatggcggcgtccccgcagacgtcgcagacgacg 29464

                                             
Query: 518   cggccgcggatctcccccgtccacgcttcggc 549
              ||||||||||||||||||||||||| |||||
Sbjct: 29465 tggccgcggatctcccccgtccacgcctcggc 29496

to top

>dbj|AP004798.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0572D06
          Length = 148920

 Score =  224 bits (113), Expect = 3e-55
 Identities = 221/257 (85%)
 Strand = Plus / Plus

                                                                          
Query: 197    ttggcaggcttgtacaggaatgccttaacgctgtgcgagttccctgagtgtttgttgtat 256
              |||||||||||||| ||||| | ||| ||| |||| ||||| |||||  | ||| |||||
Sbjct: 133957 ttggcaggcttgtagaggaacgtcttgacggtgtgagagtttcctgaaggcttgctgtat 134016

                                                                          
Query: 257    gtgaacttgaccccagagtgtgcatcgcccctcctcgtgcaatgctggtggaagctgctg 316
              |||||||||||||||||||||| ||| |||||| | |||||||||||||| |||||||||
Sbjct: 134017 gtgaacttgaccccagagtgtgtatcacccctcttagtgcaatgctggtgaaagctgctg 134076

                                                                          
Query: 317    atgggcctcgccaggcacgagtcccaccggtcgctctccggcatcgtctccgcaacactg 376
              |||||||| |||| ||| || ||||| ||||| ||||| |||||||||||||||||| ||
Sbjct: 134077 atgggccttgccaagcatgactcccaacggtcactctctggcatcgtctccgcaacaatg 134136

                                                                          
Query: 377    tagatgccctcgtagtttgtgaatgcctggtagttgatgacctcaccagatttcgtaatg 436
              ||||  |||| | |||||||||| |||||||||||||| || ||||||||| |||| |||
Sbjct: 134137 tagacacccttggagtttgtgaaggcctggtagttgataacttcaccagatctcgtgatg 134196

                               
Query: 437    cacagaacagcaacctc 453
              || || || ||||||||
Sbjct: 134197 cagaggacggcaacctc 134213



 Score =  119 bits (60), Expect = 1e-23
 Identities = 84/92 (91%)
 Strand = Plus / Plus

                                                                          
Query: 458    ccttcgagggcgtggtcctcgggcccgatggcagagtcggcgcagacgtcgcagacgacg 517
              ||||||||| ||||||||||||| |||||||| | |||  ||||||||||||||||||||
Sbjct: 136879 ccttcgaggacgtggtcctcggggccgatggcggcgtccccgcagacgtcgcagacgacg 136938

                                              
Query: 518    cggccgcggatctcccccgtccacgcttcggc 549
               ||||||||||||||||||||||||| |||||
Sbjct: 136939 tggccgcggatctcccccgtccacgcctcggc 136970

to top

>ref|NM_124867.2| Arabidopsis thaliana unknown protein AT5G54855 mRNA, complete cds
          Length = 679

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 130/159 (81%)
 Strand = Plus / Minus

                                                                       
Query: 304 gtggaagctgctgatgggcctcgccaggcacgagtcccaccggtcgctctccggcatcgt 363
           |||||||||||||||||| || || ||||| | |||||| || |||||||| ||||| ||
Sbjct: 417 gtggaagctgctgatgggtcttgcaaggcaagcgtcccaacgttcgctctctggcattgt 358

                                                                       
Query: 364 ctccgcaacactgtagatgccctcgtagtttgtgaatgcctggtagttgatgacctcacc 423
           ||| |||||  ||||||  || |   |||||||||| || |||||||| |  || || ||
Sbjct: 357 ctctgcaactgtgtagacaccttttgagtttgtgaaagcttggtagttcacaacttctcc 298

                                                  
Query: 424 agatttcgtaatgcacagaacagcaacctcagcgccttc 462
           |||||| || ||||||||||| ||||||||||| |||||
Sbjct: 297 agatttggttatgcacagaaccgcaacctcagctccttc 259

to top

>gb|AY093718.1| Arabidopsis thaliana AT1g27100/T7N9_16 mRNA, complete cds
          Length = 441

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 130/159 (81%)
 Strand = Plus / Minus

                                                                       
Query: 304 gtggaagctgctgatgggcctcgccaggcacgagtcccaccggtcgctctccggcatcgt 363
           |||||||||||||||||| || || ||||| | |||||| || |||||||| ||||| ||
Sbjct: 315 gtggaagctgctgatgggtcttgcaaggcaagcgtcccaacgttcgctctctggcattgt 256

                                                                       
Query: 364 ctccgcaacactgtagatgccctcgtagtttgtgaatgcctggtagttgatgacctcacc 423
           ||| |||||  ||||||  || |   |||||||||| || |||||||| |  || || ||
Sbjct: 255 ctctgcaactgtgtagacaccttttgagtttgtgaaagcttggtagttcacaacttctcc 196

                                                  
Query: 424 agatttcgtaatgcacagaacagcaacctcagcgccttc 462
           |||||| || ||||||||||| ||||||||||| |||||
Sbjct: 195 agatttggttatgcacagaaccgcaacctcagctccttc 157

to top

>gb|AF410270.1|AF410270 Arabidopsis thaliana unknown protein mRNA, complete cds
          Length = 636

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 130/159 (81%)
 Strand = Plus / Minus

                                                                       
Query: 304 gtggaagctgctgatgggcctcgccaggcacgagtcccaccggtcgctctccggcatcgt 363
           |||||||||||||||||| || || ||||| | |||||| || |||||||| ||||| ||
Sbjct: 374 gtggaagctgctgatgggtcttgcaaggcaagcgtcccaacgttcgctctctggcattgt 315

                                                                       
Query: 364 ctccgcaacactgtagatgccctcgtagtttgtgaatgcctggtagttgatgacctcacc 423
           ||| |||||  ||||||  || |   |||||||||| || |||||||| |  || || ||
Sbjct: 314 ctctgcaactgtgtagacaccttttgagtttgtgaaagcttggtagttcacaacttctcc 255

                                                  
Query: 424 agatttcgtaatgcacagaacagcaacctcagcgccttc 462
           |||||| || ||||||||||| ||||||||||| |||||
Sbjct: 254 agatttggttatgcacagaaccgcaacctcagctccttc 216

to top

>dbj|AK118946.1| Arabidopsis thaliana At5g54855 mRNA for unknown protein, complete
           cds, clone: RAFL21-28-L11
          Length = 635

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 130/159 (81%)
 Strand = Plus / Minus

                                                                       
Query: 304 gtggaagctgctgatgggcctcgccaggcacgagtcccaccggtcgctctccggcatcgt 363
           |||||||||||||||||| || || ||||| | |||||| || |||||||| ||||| ||
Sbjct: 387 gtggaagctgctgatgggtcttgcaaggcaagcgtcccaacgttcgctctctggcattgt 328

                                                                       
Query: 364 ctccgcaacactgtagatgccctcgtagtttgtgaatgcctggtagttgatgacctcacc 423
           ||| |||||  ||||||  || |   |||||||||| || |||||||| |  || || ||
Sbjct: 327 ctctgcaactgtgtagacaccttttgagtttgtgaaagcttggtagttcacaacttctcc 268

                                                  
Query: 424 agatttcgtaatgcacagaacagcaacctcagcgccttc 462
           |||||| || ||||||||||| ||||||||||| |||||
Sbjct: 267 agatttggttatgcacagaaccgcaacctcagctccttc 229

to top

>dbj|AB005232.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MBG8
          Length = 80315

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 125/153 (81%)
 Strand = Plus / Minus

                                                                         
Query: 304   gtggaagctgctgatgggcctcgccaggcacgagtcccaccggtcgctctccggcatcgt 363
             |||||||||||||||||| || || ||||| | |||||| || |||||||| ||||| ||
Sbjct: 43128 gtggaagctgctgatgggtcttgcaaggcaagcgtcccaacgttcgctctctggcattgt 43069

                                                                         
Query: 364   ctccgcaacactgtagatgccctcgtagtttgtgaatgcctggtagttgatgacctcacc 423
             ||| |||||  ||||||  || |   |||||||||| || |||||||| |  || || ||
Sbjct: 43068 ctctgcaactgtgtagacaccttttgagtttgtgaaagcttggtagttcacaacttctcc 43009

                                              
Query: 424   agatttcgtaatgcacagaacagcaacctcagc 456
             |||||| || ||||||||||| |||||||||||
Sbjct: 43008 agatttggttatgcacagaaccgcaacctcagc 42976

to top

>gb|AY088675.1| Arabidopsis thaliana clone 9159 mRNA, complete sequence
          Length = 661

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 129/159 (81%)
 Strand = Plus / Minus

                                                                       
Query: 304 gtggaagctgctgatgggcctcgccaggcacgagtcccaccggtcgctctccggcatcgt 363
           |||||||||||||||||| || || ||||| | |||||| || |||||||| ||||| ||
Sbjct: 417 gtggaagctgctgatgggtcttgcaaggcaagcgtcccaacgttcgctctctggcattgt 358

                                                                       
Query: 364 ctccgcaacactgtagatgccctcgtagtttgtgaatgcctggtagttgatgacctcacc 423
           ||| |||||  ||||||  || |   |||| ||||| || |||||||| |  || || ||
Sbjct: 357 ctctgcaactgtgtagacaccttttgagttagtgaaagcttggtagttcacaacttctcc 298

                                                  
Query: 424 agatttcgtaatgcacagaacagcaacctcagcgccttc 462
           |||||| || ||||||||||| ||||||||||| |||||
Sbjct: 297 agatttggttatgcacagaaccgcaacctcagctccttc 259

to top

>emb|BX830033.1|CNS0A053 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB54ZF04 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1507

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 119/150 (79%)
 Strand = Plus / Minus

                                                                        
Query: 307  gaagctgctgatgggcctcgccaggcacgagtcccaccggtcgctctccggcatcgtctc 366
            ||||||||||||||| || || ||| | | |||||| || |||||||| ||||| |||||
Sbjct: 1283 gaagctgctgatgggtcttgcaagggaagcgtcccaacgttcgctctctggcattgtctc 1224

                                                                        
Query: 367  cgcaacactgtagatgccctcgtagtttgtgaatgcctggtagttgatgacctcaccaga 426
             |||||  | ||||  || |   ||||||| || || |||||||| |  || || |||||
Sbjct: 1223 tgcaactgtttagacaccttttgagtttgtaaaagcttggtagttcacaacttctccaga 1164

                                          
Query: 427  tttcgtaatgcacagaacagcaacctcagc 456
            ||| || ||||||||||| |||||||||||
Sbjct: 1163 tttggttatgcacagaaccgcaacctcagc 1134

to top

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 495      cggcgcagacgtcgcagacgacgcggc 521
                ||||||||||| |||||||||||||||
Sbjct: 11359239 cggcgcagacggcgcagacgacgcggc 11359213



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 498     cgcagacgtcgcagacgacgcggc 521
               |||||||| |||||||||||||||
Sbjct: 8951904 cgcagacggcgcagacgacgcggc 8951927

to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                           
Query: 495      cggcgcagacgtcgcagacgacgcggc 521
                ||||||||||| |||||||||||||||
Sbjct: 11356002 cggcgcagacggcgcagacgacgcggc 11355976



 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 498     cgcagacgtcgcagacgacgcggc 521
               |||||||| |||||||||||||||
Sbjct: 8949739 cgcagacggcgcagacgacgcggc 8949762

to top

>gb|AC134230.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0005J15, complete sequence
          Length = 159270

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 495   cggcgcagacgtcgcagacgacgcggc 521
             ||||||||||| |||||||||||||||
Sbjct: 67536 cggcgcagacggcgcagacgacgcggc 67510

to top

>emb|BX248354.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment
              1/8
          Length = 348517

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 561    ccgcaagcaggaaagcgaggagggcc 586
              ||||||||||||| ||||||||||||
Sbjct: 197401 ccgcaagcaggaaggcgaggagggcc 197376

to top

>gb|AY364845.1| Virus PhiCh1 pBgB51 capsid protein, int1, and capsid protein genes,
            complete cds
          Length = 5995

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 505  gtcgcagacgacgcggccgcg 525
            |||||||||||||||||||||
Sbjct: 5742 gtcgcagacgacgcggccgcg 5722

to top

>gb|AY364843.1| Virus PhiCh1 pBgB5 ORF34-5, integrase, and ORF36-5 genes, complete
            cds
          Length = 5995

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 505  gtcgcagacgacgcggccgcg 525
            |||||||||||||||||||||
Sbjct: 5742 gtcgcagacgacgcggccgcg 5722

to top

>gb|AF440695.1| Virus PhiCh1, complete genome
          Length = 58498

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 505   gtcgcagacgacgcggccgcg 525
             |||||||||||||||||||||
Sbjct: 27049 gtcgcagacgacgcggccgcg 27029

to top

>ref|XM_959884.1| Neurospora crassa OR74A hypothetical protein (NCU03118.1) partial
           mRNA
          Length = 1119

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 493 gtcggcgcagacgtcgcagacgacgcgg 520
           ||||||| ||||||||||||| ||||||
Sbjct: 834 gtcggcggagacgtcgcagactacgcgg 807

to top

>ref|XM_330553.1| Neurospora crassa OR74A hypothetical protein (NCU03118.1) partial
           mRNA
          Length = 1119

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 493 gtcggcgcagacgtcgcagacgacgcgg 520
           ||||||| ||||||||||||| ||||||
Sbjct: 834 gtcggcggagacgtcgcagactacgcgg 807

to top

>gb|AC099604.4| Mus musculus chromosome 1, clone RP23-335B22, complete sequence
          Length = 197338

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 105   cttccctttcagatcttaca 124
             ||||||||||||||||||||
Sbjct: 63512 cttccctttcagatcttaca 63531

to top

>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 466     ggcgtggtcctcgggcccgatggc 489
               |||||||| |||||||||||||||
Sbjct: 4768900 ggcgtggtgctcgggcccgatggc 4768923

to top

>emb|AL109838.11|HSDJ796I8 Human DNA sequence from clone RP4-796I8 on chromosome 20 Contains a
              putative novel gene, ESTs, STSs and GSSs, complete sequence
          Length = 121235

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 282    cgcccctcctcgtgcaatgc 301
              ||||||||||||||||||||
Sbjct: 100975 cgcccctcctcgtgcaatgc 100956

to top

>emb|X75952.1|SGHRDBSPR S.griseus hrdB and sprC genes for sigma factor and serine protease
          Length = 4449

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 ctctccggcatcgtctccgc 369
           ||||||||||||||||||||
Sbjct: 52  ctctccggcatcgtctccgc 71

to top

>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29
          Length = 295150

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 350   ctctccggcatcgtctccgc 369
             ||||||||||||||||||||
Sbjct: 78027 ctctccggcatcgtctccgc 78046

to top

>emb|AJ003022.1|SCA32WHIH Streptomyces coelicolor whiH gene
          Length = 3500

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 350  ctctccggcatcgtctccgc 369
            ||||||||||||||||||||
Sbjct: 2642 ctctccggcatcgtctccgc 2661

to top

>gb|AE012056.1| Xanthomonas axonopodis pv. citri str. 306,  section 434 of 469 of the
            complete genome
          Length = 9445

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 466  ggcgtggtcctcgggcccgatggc 489
            |||||||| |||||||||||||||
Sbjct: 7553 ggcgtggtgctcgggcccgatggc 7576

to top

>gb|AE012520.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 428
            of 460 of the complete genome
          Length = 11484

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 466  ggcgtggtcctcgggcccgatggc 489
            |||||||| |||||||||||||||
Sbjct: 1639 ggcgtggtgctcgggcccgatggc 1662

to top

>gb|AC135209.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0071M09, complete sequence
          Length = 143595

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 498   cgcagacgtcgcagacgacgcggc 521
             |||||||| |||||||||||||||
Sbjct: 76765 cgcagacggcgcagacgacgcggc 76788

to top

>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 466     ggcgtggtcctcgggcccgatggc 489
               |||||||| |||||||||||||||
Sbjct: 4805469 ggcgtggtgctcgggcccgatggc 4805492

to top

>gb|AC120182.8| Mus musculus chromosome 1, clone RP24-501C2, complete sequence
          Length = 188506

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 298   atgctggtggaagctgctga 317
             ||||||||||||||||||||
Sbjct: 24868 atgctggtggaagctgctga 24887

to top

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 501     agacgtcgcagacgacgcggccgcggat 528
               |||||| || ||||||||||||||||||
Sbjct: 2820213 agacgttgccgacgacgcggccgcggat 2820186

to top

>gb|AC008572.6|AC008572 Homo sapiens chromosome 5 clone CTC-551A13, complete sequence
          Length = 170529

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 436   gcacagaacagcaacctcag 455
             ||||||||||||||||||||
Sbjct: 74403 gcacagaacagcaacctcag 74384

to top

>gb|AC093475.9| Mus musculus chromosome 1, clone RP23-54K22, complete sequence
          Length = 248543

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 298    atgctggtggaagctgctga 317
              ||||||||||||||||||||
Sbjct: 216608 atgctggtggaagctgctga 216627

to top

>gb|AY106131.1| Zea mays PCO096827 mRNA sequence
          Length = 952

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 306 ggaagctgctgatgggcctcgccaggcacgag 337
           |||||||| ||| |||||||||||||| ||||
Sbjct: 128 ggaagctggtgaagggcctcgccaggcccgag 159

to top

>gb|AC122448.3| Mus musculus BAC clone RP24-243B16 from 15, complete sequence
          Length = 159923

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    gactgacatcagtaatgacc 77
             ||||||||||||||||||||
Sbjct: 81073 gactgacatcagtaatgacc 81054


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,854,287
Number of Sequences: 3902068
Number of extensions: 3854287
Number of successful extensions: 70582
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70237
Number of HSP's gapped (non-prelim): 339
length of query: 691
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 668
effective length of database: 17,143,297,704
effective search space: 11451722866272
effective search space used: 11451722866272
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result