ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags11o24 |
|---|---|
| Clone Library Name | barley_pub |
>MUC5B_HUMAN (Q9HC84) Mucin-5B precursor (Mucin 5 subtype B, tracheobronchial)| (High molecular weight salivary mucin MG1) (Sublingual gland mucin) Length = 5703 Score = 33.5 bits (75), Expect = 0.52 Identities = 33/143 (23%), Positives = 44/143 (30%), Gaps = 29/143 (20%) Frame = -1 Query: 573 STSTPPSPTRKYDEPSDAGCDGERQTALTTMMSRLRGMAPGAHRPWMRASSEMTPCWRAG 394 +T TPP P + T T S G H + TP G Sbjct: 3940 TTHTPPVPNTTATTHGRSLSPSSPHTVRTAWTSATSGTLGTTHITEPSTGTSHTPAATTG 3999 Query: 393 TTTTWT-----------------------------SSRCPRTSPPQRCRARDTAAPDQPR 301 TTTT T +SR T+ P + R T P QP Sbjct: 4000 TTTTSTPALSSPHPSSRTTESPPSPGTTTPGHTTATSRTTATATPSKTRT-STLLPSQPT 4058 Query: 300 GKKSLDTTATVHWRPRCSWAHYL 232 + T T P+C+W+ +L Sbjct: 4059 SAP-ITTVVTTGCEPQCAWSEWL 4080 Score = 33.1 bits (74), Expect = 0.68 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%) Frame = -1 Query: 396 GTTT---TWTSSRCPRTSPPQRCRARDTAAPDQPRGKKSLDTTATVHWRPRCSWAHYL 232 GTTT T +SR T+ P + R T P QP + T T+ P+C+W+ +L Sbjct: 2269 GTTTPGHTTATSRTTATATPSKTRT-STLLPSQPTSAP-ITTVVTMGCEPQCAWSEWL 2324 Score = 31.6 bits (70), Expect = 2.0 Identities = 32/127 (25%), Positives = 48/127 (37%), Gaps = 10/127 (7%) Frame = -1 Query: 582 RALSTSTPPSPTRKYDEPSDAGCDGERQTALTTMMSRLRGMAPGAHRPWMRASSEMTPCW 403 R+LS S+P + + + T +T S G + A S P Sbjct: 2729 RSLSPSSPHTVRTAWTSATSGTLGTTHITEPSTGTSHTPAATTGTTQHSTPALSSPHPSS 2788 Query: 402 RA-------GTTT---TWTSSRCPRTSPPQRCRARDTAAPDQPRGKKSLDTTATVHWRPR 253 R GTTT T +SR T+ P + R T P P + T T+ P+ Sbjct: 2789 RTTESPPSPGTTTPGHTTATSRTTATATPSKTRT-STLLPSSPTSAP-ITTVVTMGCEPQ 2846 Query: 252 CSWAHYL 232 C+W+ +L Sbjct: 2847 CAWSEWL 2853 Score = 30.8 bits (68), Expect = 3.4 Identities = 32/127 (25%), Positives = 47/127 (37%), Gaps = 10/127 (7%) Frame = -1 Query: 582 RALSTSTPPSPTRKYDEPSDAGCDGERQTALTTMMSRLRGMAPGAHRPWMRASSEMTPCW 403 R+L S+P + + + T +T S G +P A S P Sbjct: 3427 RSLPPSSPHTVPTAWTSATSGILGTTHITEPSTGTSHTPAATTGTTQPSTPALSSPHPSS 3486 Query: 402 RA-------GTTT---TWTSSRCPRTSPPQRCRARDTAAPDQPRGKKSLDTTATVHWRPR 253 R GTTT T +SR T+ P + R T P P + T T P+ Sbjct: 3487 RTTESPPSPGTTTPGHTRGTSRTTATATPSKTRT-STLLPSSPTSAP-ITTVVTTGCEPQ 3544 Query: 252 CSWAHYL 232 C+W+ +L Sbjct: 3545 CAWSEWL 3551
>V_NDVU2 (Q06428) Nonstructural protein V| Length = 239 Score = 33.5 bits (75), Expect = 0.52 Identities = 32/121 (26%), Positives = 50/121 (41%), Gaps = 12/121 (9%) Frame = -1 Query: 573 STSTPPSPTRKYDEPSDAGCDGERQTALTTMMSRLRGMAPGAHRPWMRASSEMTPCWRAG 394 +TST PT+ DE D +L +M+ +L + A + M + P RA Sbjct: 90 ATSTDQPPTQAADEAGDTQLKTGASNSLLSMLDKLSNKSSNAKKGPM-----VKPPGRAS 144 Query: 393 TTTTWTSSRCPRTSPPQRCRARDTAAPDQPRGKK-----------SLDTTATVHW-RPRC 250 +T+ T+ S R ++R+TA P Q R K ++ T+ W P C Sbjct: 145 STSDSTAGE----STKPRKQSRETAEPGQGRPWKPGHRREHSISWTMGGVTTISWCNPSC 200 Query: 249 S 247 S Sbjct: 201 S 201
>CN159_HUMAN (Q7Z3D6) Protein C14orf159, mitochondrial precursor| Length = 616 Score = 32.7 bits (73), Expect = 0.89 Identities = 15/53 (28%), Positives = 22/53 (41%) Frame = -2 Query: 335 VRVTPPPLTNPGGRKAWTPLPRFTGGRGALGHIIWWCFQFGVCTGCCTHMSLY 177 V P PL + W P+ +GH +W ++FG CTG + Y Sbjct: 58 VNTGPLPLLGQSEPEKWMLPPQGAISETRMGHPQFWKYEFGACTGSLASLEQY 110
>DBP8_NEUCR (Q7RYZ7) ATP-dependent RNA helicase dbp-8 (EC 3.6.1.-)| Length = 626 Score = 32.3 bits (72), Expect = 1.2 Identities = 22/68 (32%), Positives = 32/68 (47%) Frame = -3 Query: 613 DEERDVHEIEAGSVDEHSTKSDEEVXXXXXXXXXXRTANCSDDDDEQAAGYGTRSSPPMD 434 DE+ D H++E G DE SDEE ++ +D++ Q+AG G+ S D Sbjct: 63 DEDEDEHDLEEGVSDEGEGVSDEE----------EGVSDEDEDEENQSAGSGSDS----D 108 Query: 433 ESILGDDA 410 L DA Sbjct: 109 SDSLDSDA 116
>CAC1E_RAT (Q07652) Voltage-dependent R-type calcium channel alpha-1E subunit| (Voltage-gated calcium channel alpha subunit Cav2.3) (Calcium channel, L type, alpha-1 polypeptide, isoform 6) (RBE-II) (RBE2) (Brain calcium channel II) (BII) Length = 2222 Score = 32.0 bits (71), Expect = 1.5 Identities = 18/43 (41%), Positives = 22/43 (51%) Frame = -2 Query: 425 PRR*RRAGGQVPPQPGPLHDVQGRHRHKDAVRVTPPPLTNPGG 297 PRR RR VPP+P PL RH ++PPP + GG Sbjct: 2061 PRRSRRQLPPVPPKPRPLLSYSSLMRHTGG--ISPPPDGSEGG 2101
>CAC1E_MOUSE (Q61290) Voltage-dependent R-type calcium channel alpha-1E subunit| (Voltage-gated calcium channel alpha subunit Cav2.3) (Calcium channel, L type, alpha-1 polypeptide, isoform 6) (Brain calcium channel II) (BII) Length = 2272 Score = 32.0 bits (71), Expect = 1.5 Identities = 18/43 (41%), Positives = 22/43 (51%) Frame = -2 Query: 425 PRR*RRAGGQVPPQPGPLHDVQGRHRHKDAVRVTPPPLTNPGG 297 PRR RR VPP+P PL RH ++PPP + GG Sbjct: 2112 PRRSRRQLPPVPPKPRPLLSYSSLMRHTGG--ISPPPDGSEGG 2152
>ABIL2_ARATH (Q9M3A3) Protein ABIL2 (Abl interactor-like protein 2) (AtABIL2)| Length = 312 Score = 32.0 bits (71), Expect = 1.5 Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 1/105 (0%) Frame = -1 Query: 597 FMRLKRALSTSTPPSPTRKYDEPSDAGCDGERQTALTTMMSRLRGMAPGAHRPWMRASSE 418 F RA TPP P RK S + +++A + S + P + S Sbjct: 166 FRNAVRATIRETPPPPVRKSTSQSSSPRQPPQRSATFSFTSTI----PKKEQDKRSVSPH 221 Query: 417 MTPCWRAGTTTTWTSSRCPRTSPPQRCRA-RDTAAPDQPRGKKSL 286 P R+G+ T S+ R + P + R+ P +PR S+ Sbjct: 222 RFPLLRSGSVATRKSASISRPTTPSKSRSITPIRYPSEPRRSASV 266
>ENV_MLVFP (P26803) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E; R protein] Length = 676 Score = 31.6 bits (70), Expect = 2.0 Identities = 26/114 (22%), Positives = 38/114 (33%), Gaps = 1/114 (0%) Frame = -1 Query: 567 STPPSPTRKYDEPSDAGCDGERQTALTTMMSRLRGMAPGAHRPWMRASSEMTPCWRAGTT 388 S+PP P P +G G R L + P + W R + +G Sbjct: 99 SSPPGP------PCCSGSSGNRAGCARDCDEPLTSLTPRCNTAWNRLKLDQVTHKSSGGF 152 Query: 387 TTWTSSRCPRTSPPQRCRARDTAAPDQPR-GKKSLDTTATVHWRPRCSWAHYLV 229 S PR +A+ PD +TT +W+P SW + V Sbjct: 153 YVCPGSHRPR-------KAKSCGGPDSFYCASWGCETTGRAYWKPSSSWDYITV 199
>MSA2_PLAF6 (P50497) Merozoite surface antigen 2 precursor (MSA-2)| Length = 274 Score = 31.6 bits (70), Expect = 2.0 Identities = 27/101 (26%), Positives = 39/101 (38%), Gaps = 1/101 (0%) Frame = -1 Query: 594 MRLKRALSTSTPPSPTRKYDEP-SDAGCDGERQTALTTMMSRLRGMAPGAHRPWMRASSE 418 M ++R+++ S PP+ T S AG G + + S G PGA ++ Sbjct: 37 MSIRRSMAESKPPTGTGASGSAGSGAGASGSAGSGDGAVASARNGANPGADAEGSSSTPA 96 Query: 417 MTPCWRAGTTTTWTSSRCPRTSPPQRCRARDTAAPDQPRGK 295 T TTTT T+ TS A P+GK Sbjct: 97 TTTTTTTTTTTTTTNDAEASTSTSSE-NPNHNNAETNPKGK 136
>MMP12_RAT (Q63341) Macrophage metalloelastase precursor (EC 3.4.24.65) (MME)| (Matrix metalloproteinase-12) (MMP-12) Length = 465 Score = 31.6 bits (70), Expect = 2.0 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 4/56 (7%) Frame = +3 Query: 285 PGFSSPGVGQGRRCHAHGIFVAVTSLD----IVKRSRLWWYLPSSTASSPRMLSSM 440 P ++PG CH F AVT++ K WW LP S A++ +SSM Sbjct: 265 PSLTNPGSPPSTVCHQSLSFDAVTTVGDKIFFFKDWFFWWRLPGSPATNITSISSM 320
>GLGB1_STRAW (Q82JF0) 1,4-alpha-glucan branching enzyme 1 (EC 2.4.1.18)| (Glycogen branching enzyme 1) (BE 1) (1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase 1) Length = 838 Score = 31.2 bits (69), Expect = 2.6 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = -2 Query: 461 WHQELTAHG*EHPRR*RRAGGQVPPQPGPLH-DVQGRHRHKDAVRVTPPPLT 309 WH+ L G R GG P P+ + QGRH ++R+T PPL+ Sbjct: 787 WHETLNTDG-------ARYGGSDVTNPHPVKPEPQGRHGRPASIRLTLPPLS 831
>FRAS1_HUMAN (Q86XX4) Extracellular matrix protein FRAS1 precursor| Length = 4007 Score = 30.8 bits (68), Expect = 3.4 Identities = 12/39 (30%), Positives = 18/39 (46%) Frame = +1 Query: 190 WVQQPVQTPNWKHHQIMCPRAPRPPVNRGSGVQAFLPPG 306 W P + H ++ C P PP++ G AF+P G Sbjct: 108 WASSPCSVCSCNHGEVRCTPQPCPPLSCGHQELAFIPEG 146
>BOC_MOUSE (Q6AZB0) Brother of CDO precursor (Protein BOC)| Length = 1110 Score = 30.8 bits (68), Expect = 3.4 Identities = 35/110 (31%), Positives = 47/110 (42%), Gaps = 4/110 (3%) Frame = -1 Query: 570 TSTPPSPTRKYD-EPSDAGCDGERQTALTTMMSRLRGMAPGAHRPWMRASSEMTPCWRAG 394 T T P Y+ E + C GE QTA+ T + G P +P + AS E R Sbjct: 530 TLTRLDPGSLYEVEMAAYNCAGEGQTAMVTFRT---GRRP---KPEIVASKEQQ-IQRDD 582 Query: 393 TTTTWTSSRCP---RTSPPQRCRARDTAAPDQPRGKKSLDTTATVHWRPR 253 + SS P R SPP+ APD+P + +T+ V W PR Sbjct: 583 PGASLQSSSQPDHGRLSPPE--------APDRPTISTASETSVYVTWIPR 624
>BOC_HUMAN (Q9BWV1) Brother of CDO precursor (Protein BOC)| Length = 1114 Score = 30.8 bits (68), Expect = 3.4 Identities = 35/110 (31%), Positives = 47/110 (42%), Gaps = 4/110 (3%) Frame = -1 Query: 570 TSTPPSPTRKYD-EPSDAGCDGERQTALTTMMSRLRGMAPGAHRPWMRASSEMTPCWRAG 394 T T P Y+ E + C GE QTA+ T + G P +P + AS E R Sbjct: 535 TLTRLDPGSLYEVEMAAYNCAGEGQTAMVTFRT---GRRP---KPEIMASKEQQ-IQRDD 587 Query: 393 TTTTWTSSRCP---RTSPPQRCRARDTAAPDQPRGKKSLDTTATVHWRPR 253 + SS P R SPP+ APD+P + +T+ V W PR Sbjct: 588 PGASPQSSSQPDHGRLSPPE--------APDRPTISTASETSVYVTWIPR 629
>EPN1_HUMAN (Q9Y6I3) Epsin-1 (EPS-15-interacting protein 1) (EH domain-binding| mitotic phosphoprotein) Length = 551 Score = 30.4 bits (67), Expect = 4.4 Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 4/86 (4%) Frame = +3 Query: 240 VPKSTAAASEPWQWCPGFSSPGVGQGRRCHAHGIFVA----VTSLDIVKRSRLWWYLPSS 407 VP S +AS+PW P FS P G + +G A + RL LP+S Sbjct: 333 VPVSGPSASDPWTPAPAFSDPWGGSPAKPSTNGTTAAGGFDTEPDEFSDFDRLRTALPTS 392 Query: 408 TASSPRMLSSMGGELLVPYPAACSSS 485 SS L + GE+ P A S Sbjct: 393 -GSSAGELELLAGEVPARSPGAFDMS 417
>SGS3_DROSI (P13729) Salivary glue protein Sgs-3 precursor| Length = 217 Score = 30.4 bits (67), Expect = 4.4 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 6/63 (9%) Frame = -1 Query: 426 SSEMTPCWRAGTTTTWTSSRCPRTSPPQRCRARDT------AAPDQPRGKKSLDTTATVH 265 S+ T TTTT T++R P T P C++ T A P +P K + TT T Sbjct: 46 STSTTTTTTTTTTTTTTTTRAPPTKP--TCKSTSTTTTTTRAPPTKPTCKSTSTTTTTTR 103 Query: 264 WRP 256 P Sbjct: 104 APP 106
>6PGL_MYCLE (Q49700) 6-phosphogluconolactonase (EC 3.1.1.31) (6PGL)| Length = 247 Score = 30.4 bits (67), Expect = 4.4 Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 25/112 (22%) Frame = +3 Query: 213 SELEAPPDNVPKSTAAASEPWQWCPGFSSPGVGQGRRCHAHGIF---VAVT--------- 356 ++LEA + AA + P P F +G G H + +F VAV Sbjct: 114 NDLEAAALAYEQLLAAYAAPGYPTPNFDVHLMGMGPEGHINSLFPNTVAVRETSRMVVGV 173 Query: 357 -------------SLDIVKRSRLWWYLPSSTASSPRMLSSMGGELLVPYPAA 473 +L+ ++RSR W + S TA + + ++MGG PAA Sbjct: 174 RNSPKPPPERITLTLNAIQRSREVWLMVSGTAKADAVAAAMGGAPSASIPAA 225
>BPAEA_HUMAN (O94833) Bullous pemphigoid antigen 1, isoforms 6/9/10| (Trabeculin-beta) (Bullous pemphigoid antigen) (BPA) (Hemidesmosomal plaque protein) (Dystonia musculorum protein) (Dystonin) Length = 5171 Score = 29.6 bits (65), Expect = 7.6 Identities = 18/62 (29%), Positives = 24/62 (38%) Frame = -1 Query: 591 RLKRALSTSTPPSPTRKYDEPSDAGCDGERQTALTTMMSRLRGMAPGAHRPWMRASSEMT 412 R +R+ +S SP R S A Q TT L + +PW+ S T Sbjct: 4968 RGRRSRPSSRGASPNRSTSVSSQAAQAASPQVPATTTPKILHPLTRNYGKPWLTNSKMST 5027 Query: 411 PC 406 PC Sbjct: 5028 PC 5029
>ENV_MLVF5 (P03390) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E; R protein] Length = 675 Score = 29.6 bits (65), Expect = 7.6 Identities = 29/119 (24%), Positives = 42/119 (35%), Gaps = 5/119 (4%) Frame = -1 Query: 570 TSTPPSPTRKYDEPSDAGCDGERQTALTTMMSRLRGMAPGAHRPWMRASSEMTPCWRAGT 391 +S P P S AGC + LT++ P + W R + Sbjct: 99 SSPPGPPCCSGSSGSSAGCSRDCDEPLTSL-------TPRCNTAWNRLKLDQV------- 144 Query: 390 TTTWTSSR----CPRTSPPQRCRARDTAAPDQPR-GKKSLDTTATVHWRPRCSWAHYLV 229 T SS CP + P+ A+ PD +TT V+W+P SW + V Sbjct: 145 --THKSSEGFYVCPGSHRPRE--AKSCGGPDSFYCASWGCETTGRVYWKPSSSWDYITV 199
>Y215_ADE02 (P03291) Hypothetical protein F-215| Length = 215 Score = 29.6 bits (65), Expect = 7.6 Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 5/103 (4%) Frame = -1 Query: 591 RLKRALSTSTPPSPTRKYDEPSDAGCDGERQTA----LTTMMSRLRGMAPGAHRPWMRAS 424 R KR+ S+S P SP + E C T L+ +S P + R R Sbjct: 44 RRKRS-SSSWPKSPIKTTQETCRRFCARPPSTTPKLILSNSLSGSSSPGPSSSRRGARFR 102 Query: 423 SEMTPCWRAGTTTTWTSSRCPRTSPPQRC-RARDTAAPDQPRG 298 R+ T+ ++S CPR +P C +R +P RG Sbjct: 103 RSTAASSRSPATSARSTSSCPRAAPTCPCPLSRRVPSPPYLRG 145
>LBH2_HUMAN (P08910) Abhydrolase domain-containing protein 2 (Protein PHPS1-2)| Length = 425 Score = 29.6 bits (65), Expect = 7.6 Identities = 18/49 (36%), Positives = 23/49 (46%) Frame = -1 Query: 558 PSPTRKYDEPSDAGCDGERQTALTTMMSRLRGMAPGAHRPWMRASSEMT 412 P T++Y P G G QTAL M R+R P HR ++ S T Sbjct: 60 PLLTKEYIPPLIWGKSGHIQTALYGKMGRVRSPHPYGHRKFITMSDGAT 108
>ARE1_SACBA (Q876L3) Sterol O-acyltransferase 1 (EC 2.3.1.26) (Sterol-ester| synthase 1) Length = 623 Score = 29.3 bits (64), Expect = 9.9 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%) Frame = -2 Query: 290 AWTPLP--RFTGGRGALGHIIWWCFQFGVCTGCCTHMSLYV 174 AWT L +F R L +++ F FGVCTG M+LY+ Sbjct: 584 AWTALSNTKFLRSRPQLSNVV---FTFGVCTGPSMIMTLYL 621
>CREB3_HUMAN (O43889) Cyclic AMP-responsive element-binding protein 3 (Luman| protein) (Transcription factor LZIP-alpha) Length = 395 Score = 29.3 bits (64), Expect = 9.9 Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Frame = +3 Query: 354 TSLDIVKRSRLWWYLPSSTASSPRMLSSMGGELLVPYPAACSSSSSEQFAVLHHI-LHR* 530 T+ D R+ L W LP S S + + LL P PA+ + SS ++HH + Sbjct: 25 TAPDEAVRAPLDWALPLSEVPSDWEVDDLLCSLLSP-PASLNILSSSNPCLVHHDHTYSL 83 Query: 531 VRRTSSSDLVEC 566 R T S DL EC Sbjct: 84 PRETVSMDLGEC 95
>PME17_CHICK (Q98917) Melanocyte protein Pmel 17 precursor (115 kDa melanosomal| matrix protein) Length = 763 Score = 29.3 bits (64), Expect = 9.9 Identities = 10/29 (34%), Positives = 14/29 (48%) Frame = -1 Query: 447 HRPWMRASSEMTPCWRAGTTTTWTSSRCP 361 +RPW ++ CWR G T S+ P Sbjct: 51 YRPWQEGTARQNDCWRGGDVTFDISNDAP 79
>Y324_TREPA (O83344) Hypothetical protein TP0324| Length = 485 Score = 29.3 bits (64), Expect = 9.9 Identities = 17/59 (28%), Positives = 23/59 (38%) Frame = -1 Query: 420 EMTPCWRAGTTTTWTSSRCPRTSPPQRCRARDTAAPDQPRGKKSLDTTATVHWRPRCSW 244 E++ W T S RC P + R RDT P Q + S+ V + P W Sbjct: 267 EVSGQWNTATGACEASVRCENFRPLKWARLRDTHVPAQGMQELSVSGNVQVGYTPIEQW 325 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 103,106,157 Number of Sequences: 219361 Number of extensions: 2486849 Number of successful extensions: 8426 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 7762 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 8405 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5710231900 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
