ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags12d22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RL15_THEFY (Q47LL2) 50S ribosomal protein L15 30 5.4
2CC14B_MOUSE (Q6PFY9) Dual specificity protein phosphatase CDC14B... 30 7.1

>RL15_THEFY (Q47LL2) 50S ribosomal protein L15|
          Length = 149

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -2

Query: 598 IYCVYNQPTLGKLMYVDENLVTVGDTLCIGYARLDSPEKRKGSGNLKIVLRI 443
           +Y V N   L KL Y +   VT+ D +  G  R + P K  G+G + + +R+
Sbjct: 76  VYQVVNLDKLSKL-YPEGGEVTIEDLVAKGAVRKNQPVKVLGTGEISVPVRV 126



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>CC14B_MOUSE (Q6PFY9) Dual specificity protein phosphatase CDC14B (EC 3.1.3.48)|
           (EC 3.1.3.16) (CDC14 cell division cycle 14 homolog B)
          Length = 485

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -3

Query: 414 FDHEALFLTVIRGSRIPGEKITQYCLDLCEH*AGALA 304
           FDH  LF         P E I Q  LD+CE+  GA+A
Sbjct: 278 FDHHDLFFP---DGSTPAESIVQEFLDICENVKGAIA 311


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,651,563
Number of Sequences: 219361
Number of extensions: 1832478
Number of successful extensions: 3843
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3842
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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