ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags12d18 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY426992.1| Hordeum vulgare clone ABC311-593 sequence Length = 593 Score = 48.1 bits (24), Expect = 0.037 Identities = 27/28 (96%) Strand = Plus / Plus Query: 563 aaaactacagtgctactatcactgtaac 590 |||||||||| ||||||||||||||||| Sbjct: 180 aaaactacagagctactatcactgtaac 207
>gb|AC068707.7| Homo sapiens chromosome 10 clone RP11-168L22, complete sequence Length = 169414 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 417 aaataattataaatttaacaaaa 439 ||||||||||||||||||||||| Sbjct: 54444 aaataattataaatttaacaaaa 54466
>gb|AC123525.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0056E15, complete sequence Length = 147941 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 529 gtaagttaaagaaaattatatat 551 ||||||||||||||||||||||| Sbjct: 89313 gtaagttaaagaaaattatatat 89335
>emb|AJ293568.1|YDI293568 Yaba-like disease virus (YLDV), complete genome Length = 144575 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 426 taaatttaacaaaaatatgtttc 448 ||||||||||||||||||||||| Sbjct: 67445 taaatttaacaaaaatatgtttc 67423
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 529 gtaagttaaagaaaattatatat 551 ||||||||||||||||||||||| Sbjct: 1301302 gtaagttaaagaaaattatatat 1301280
>gb|AF245394.1|AF245394 Tanapox virus J1R, J2L, J3L, J4R, J5L, J6R, and J7L genes, complete cds Length = 5137 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 426 taaatttaacaaaaatatgtttc 448 ||||||||||||||||||||||| Sbjct: 782 taaatttaacaaaaatatgtttc 804
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 529 gtaagttaaagaaaattatatat 551 ||||||||||||||||||||||| Sbjct: 1299023 gtaagttaaagaaaattatatat 1299001
>gb|AC125014.8| Mus musculus chromosome 16, clone RP24-149C21, complete sequence Length = 177471 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 401 tgaaaaacatgaactgaaataa 422 |||||||||||||||||||||| Sbjct: 126574 tgaaaaacatgaactgaaataa 126553
>gb|AC159873.11| Medicago truncatula clone mth2-46p15, complete sequence Length = 129948 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 523 cttaatgtaagttaaagaaaattata 548 |||||| ||||||||||||||||||| Sbjct: 77922 cttaatttaagttaaagaaaattata 77947
>gb|AC125475.11| Medicago truncatula clone mth2-5j2, complete sequence Length = 165679 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 523 cttaatgtaagttaaagaaaattata 548 |||||| ||||||||||||||||||| Sbjct: 117041 cttaatttaagttaaagaaaattata 117016
>emb|AL391383.15| Human DNA sequence from clone RP11-532O21 on chromosome 13 Contains the 5' of the gene for transcription factor (p38 interacting protein) (P38IP) (tumor rejection antigen), the gene for a novel protein similar to casein kinase I alpha 1 CSNK1A1 and a CpG island, complete sequence Length = 98921 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 413 actgaaataattataaatttaa 434 |||||||||||||||||||||| Sbjct: 65370 actgaaataattataaatttaa 65349
>emb|CR388388.8| Zebrafish DNA sequence from clone DKEY-282G23 in linkage group 21, complete sequence Length = 100506 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 422 attataaatttaacaaaaatatgttt 447 ||||||||||| |||||||||||||| Sbjct: 62685 attataaatttcacaaaaatatgttt 62710
>gb|AC078983.17| Homo sapiens 12q BAC RP11-473M14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163613 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 527 atgtaagttaaagaaaattatatatc 552 |||||||||||||||||||| ||||| Sbjct: 55842 atgtaagttaaagaaaattaaatatc 55867
>gb|AF323786.1|AF323786 Oryza sativa subsp. indica KNOX class homeodomain protein (Oskn3) gene, partial cds Length = 5865 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 418 aataattataaatttaacaaaaatat 443 ||||||||||||||||| |||||||| Sbjct: 935 aataattataaatttaaaaaaaatat 910
>gb|AC078824.13| Homo sapiens 12 BAC RP11-542B15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 173697 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 527 atgtaagttaaagaaaattatatatc 552 |||||||||||||||||||| ||||| Sbjct: 167972 atgtaagttaaagaaaattaaatatc 167997
>dbj|AB026642.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MED5 Length = 77287 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Plus Query: 421 aattataaatttaacaaaaata 442 |||||||||||||||||||||| Sbjct: 59239 aattataaatttaacaaaaata 59260
>gb|AC104700.4| Homo sapiens BAC clone RP11-712I20 from 7, complete sequence Length = 66759 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 415 tgaaataattataaatttaacaaaa 439 ||||||||| ||||||||||||||| Sbjct: 62695 tgaaataataataaatttaacaaaa 62719
>emb|AL355592.11| Human DNA sequence from clone RP11-349E4 on chromosome 9 Contains a novel gene and a CpG island, complete sequence Length = 172445 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 417 aaataattataaatttaacaa 437 ||||||||||||||||||||| Sbjct: 24504 aaataattataaatttaacaa 24484
>emb|AL137860.22| Human DNA sequence from clone RP4-633N17 on chromosome 1p34.1-34.3 Contains the 3' end of the SLC9A1 gene for solute carrier family 9 (sodium/hydrogen exchanger), isoform 1 (antiporter, Na+/H+, amiloride sensitive) and a CpG island, complete sequence Length = 121010 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 240 ctgtaggtggttaaaatatta 260 ||||||||||||||||||||| Sbjct: 2235 ctgtaggtggttaaaatatta 2215
>gb|AC121765.2| Homo sapiens chromosome 3 clone RP11-767D18, complete sequence Length = 194455 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 409 atgaactgaaataattataaa 429 ||||||||||||||||||||| Sbjct: 44752 atgaactgaaataattataaa 44772
>gb|AC069256.15| Homo sapiens 3 BAC RP11-445G6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 149986 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 480 aattcatatcaattacttgtt 500 ||||||||||||||||||||| Sbjct: 17217 aattcatatcaattacttgtt 17237
>gb|AC092944.14| Homo sapiens 3 BAC RP11-550I24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 184688 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 480 aattcatatcaattacttgtt 500 ||||||||||||||||||||| Sbjct: 136322 aattcatatcaattacttgtt 136302
>gb|AC122138.2| Homo sapiens chromosome 4 clone RP11-818C3, complete sequence Length = 112876 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 526 aatgtaagttaaagaaaatta 546 ||||||||||||||||||||| Sbjct: 54039 aatgtaagttaaagaaaatta 54059
>emb|BX530077.4| Zebrafish DNA sequence from clone CH211-22D5 in linkage group 21, complete sequence Length = 200625 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 95 atattacaatctttacattctattt 119 |||||||||| |||||||||||||| Sbjct: 6171 atattacaatatttacattctattt 6147
>gb|AC125482.9| Medicago truncatula clone mth2-15h11, complete sequence Length = 129658 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 447 tcttgtataagatttttcact 467 ||||||||||||||||||||| Sbjct: 110 tcttgtataagatttttcact 90
>gb|AC105266.2| Homo sapiens chromosome 3 clone RP11-796K6, complete sequence Length = 181462 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 409 atgaactgaaataattataaa 429 ||||||||||||||||||||| Sbjct: 332 atgaactgaaataattataaa 352
>gb|AC093803.3| Homo sapiens BAC clone RP11-319N12 from 4, complete sequence Length = 191903 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 590 ctaaatagacagaactcatatggtg 614 |||||||||||||||| |||||||| Sbjct: 127382 ctaaatagacagaactaatatggtg 127406
>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome Length = 3544738 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 406 aacatgaactgaaataattat 426 ||||||||||||||||||||| Sbjct: 237719 aacatgaactgaaataattat 237699
>gb|AC027458.4|AC027458 Homo sapiens chromosome 18, clone RP11-723G8, complete sequence Length = 182495 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 313 tgaaatgaaatgttaatctta 333 ||||||||||||||||||||| Sbjct: 118492 tgaaatgaaatgttaatctta 118512
>emb|BX005315.7| Zebrafish DNA sequence from clone DKEY-79E6, complete sequence Length = 130903 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 585 tgtaactaaatagacagaactcata 609 ||||| ||||||||||||||||||| Sbjct: 92577 tgtaaataaatagacagaactcata 92601
>gb|AC160516.1| Medicago truncatula chromosome 7 BAC clone mth2-66d22, complete sequence Length = 116154 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 480 aattcatatcaattacttgtt 500 ||||||||||||||||||||| Sbjct: 100039 aattcatatcaattacttgtt 100019
>gb|AC116986.2| Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence Length = 333321 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 416 gaaataattataaatttaacaaaaa 440 ||||||||||||||||||| ||||| Sbjct: 64919 gaaataattataaatttaaaaaaaa 64943
>gb|AC134025.2| Homo sapiens 3 BAC RP11-231I13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 183111 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 409 atgaactgaaataattataaa 429 ||||||||||||||||||||| Sbjct: 113027 atgaactgaaataattataaa 113007
>gb|AC018513.5|AC018513 Homo sapiens chromosome 14 clone RP11-58H3 map 14q31, complete sequence Length = 190773 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 415 tgaaataattataaatttaacaaaa 439 |||||||| |||||||||||||||| Sbjct: 153828 tgaaataagtataaatttaacaaaa 153852
>emb|AL954702.9| Zebrafish DNA sequence from clone CH211-217A1, complete sequence Length = 201021 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 585 tgtaactaaatagacagaactcata 609 ||||| ||||||||||||||||||| Sbjct: 66567 tgtaaataaatagacagaactcata 66543
>dbj|AK024623.1| Homo sapiens cDNA: FLJ20970 fis, clone ADSU01505 Length = 1322 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 526 aatgtaagttaaagaaaatta 546 ||||||||||||||||||||| Sbjct: 1184 aatgtaagttaaagaaaatta 1164
>emb|Z99280.1|CEY57G11B Caenorhabditis elegans YAC Y57G11B, complete sequence Length = 48889 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 404 aaaacatgaactgaaataatt 424 ||||||||||||||||||||| Sbjct: 47345 aaaacatgaactgaaataatt 47325
>gb|AC125027.12| Mus musculus chromosome 8, clone RP24-68F20, complete sequence Length = 194850 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 aaaaatatgtttcttgtata 455 |||||||||||||||||||| Sbjct: 86318 aaaaatatgtttcttgtata 86299
>ref|XM_629587.1| Dictyostelium discoideum Rab GTPase (DDB0229407), partial mRNA Length = 618 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 aataattataaatttaacaa 437 |||||||||||||||||||| Sbjct: 39 aataattataaatttaacaa 20
>ref|NM_001012556.1| Gallus gallus DnaJ (Hsp40) homolog, subfamily B, member 6 (DNAJB6), mRNA Length = 2641 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 atatgcctatcattacaata 97 |||||||||||||||||||| Sbjct: 943 atatgcctatcattacaata 962
>gb|AC162883.4| Mus musculus chromosome 1, clone RP24-148E21, complete sequence Length = 154199 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 438 aaatatgtttcttgtataagattt 461 ||||| |||||||||||||||||| Sbjct: 67933 aaataagtttcttgtataagattt 67956
>gb|AC162377.2| Mus musculus BAC clone RP24-511C17 from chromosome 13, complete sequence Length = 139617 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 aatgaaatgttaatcttatt 335 |||||||||||||||||||| Sbjct: 122909 aatgaaatgttaatcttatt 122890
>gb|AC107692.7| Mus musculus chromosome 3, clone RP24-387H23, complete sequence Length = 148965 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 417 aaataattataaatttaacaaaaa 440 |||||||||||||||||| ||||| Sbjct: 131823 aaataattataaatttaagaaaaa 131846
>gb|AC104514.2| Drosophila melanogaster clone BACR22L21, complete sequence Length = 170718 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 attataaatttaacaaaaat 441 |||||||||||||||||||| Sbjct: 32246 attataaatttaacaaaaat 32265
>gb|AC122363.4| Mus musculus BAC clone RP23-437C1 from chromosome 19, complete sequence Length = 180129 Score = 40.1 bits (20), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Minus Query: 58 catgtttaatccaacccagnata 80 ||||||||||||||||||| ||| Sbjct: 126163 catgtttaatccaacccagcata 126141
>gb|AC115881.8| Mus musculus chromosome 6, clone RP24-365K16, complete sequence Length = 164311 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 aaaaacatgaactgaaataa 422 |||||||||||||||||||| Sbjct: 151919 aaaaacatgaactgaaataa 151938
>gb|AC134331.2| Mus musculus BAC clone RP24-344O12 from chromosome 19, complete sequence Length = 155342 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 379 ggaaaataatggacttgtgt 398 |||||||||||||||||||| Sbjct: 115327 ggaaaataatggacttgtgt 115346
>gb|AC114000.5| Mus musculus BAC clone RP23-161K1 from chromosome 14, complete sequence Length = 212322 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 390 gacttgtgttttgaaaaacatgaa 413 |||||||||||| ||||||||||| Sbjct: 55239 gacttgtgtttttaaaaacatgaa 55216
>gb|AC121859.2| Mus musculus BAC clone RP24-104F15 from 6, complete sequence Length = 205084 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 aaaaacatgaactgaaataa 422 |||||||||||||||||||| Sbjct: 22062 aaaaacatgaactgaaataa 22081
>ref|XM_760068.1| Theileria parva strain Muguga hypothetical protein (TP02_0596) partial mRNA Length = 2631 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 398 ttttgaaaaacatgaactga 417 |||||||||||||||||||| Sbjct: 831 ttttgaaaaacatgaactga 850
>ref|XM_723294.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY01046) partial mRNA Length = 5799 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 417 aaataattataaatttaacaaaaatatg 444 |||||||||| ||| ||||||||||||| Sbjct: 5655 aaataattatcaatataacaaaaatatg 5682
>ref|XM_737609.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000050.00.0) partial mRNA Length = 2289 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 ttataaatttaacaaaaata 442 |||||||||||||||||||| Sbjct: 1668 ttataaatttaacaaaaata 1687
>gb|AC007026.3| Homo sapiens PAC clone RP4-751G11 from 7, complete sequence Length = 120809 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 397 gttttgaaaaacatgaactgaaat 420 |||||||||||||| ||||||||| Sbjct: 71613 gttttgaaaaacataaactgaaat 71636
>gb|AC146185.2| Pan troglodytes BAC clone RP43-35O6 from 7, complete sequence Length = 156598 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 397 gttttgaaaaacatgaactgaaat 420 |||||||||||||| ||||||||| Sbjct: 61195 gttttgaaaaacataaactgaaat 61172
>gb|AC147000.32| Medicago truncatula clone mth2-124a16, complete sequence Length = 113682 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 417 aaataattataaatttaacaaaaa 440 ||||||||||||| |||||||||| Sbjct: 33895 aaataattataaaattaacaaaaa 33918
>gb|AC136142.12| Medicago truncatula clone mth2-9f9, complete sequence Length = 68984 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 417 aaataattataaatttaacaaaaa 440 ||||||||||||| |||||||||| Sbjct: 30481 aaataattataaaattaacaaaaa 30504
>gb|AC151835.4| Mus musculus BAC clone RP23-333J1 from chromosome 14, complete sequence Length = 215551 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 390 gacttgtgttttgaaaaacatgaa 413 |||||||||||| ||||||||||| Sbjct: 175140 gacttgtgtttttaaaaacatgaa 175117
>gb|AC140720.21| Medicago truncatula clone mth2-17l10, complete sequence Length = 122940 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 417 aaataattataaatttaacaaaaa 440 ||||||||||||| |||||||||| Sbjct: 35666 aaataattataaaattaacaaaaa 35643
>emb|AL445529.14| Human DNA sequence from clone RP11-793K1 on chromosome 6 Cpntains a ribosomal protein S15a (RPS15A) pseudogene, complete sequence Length = 76336 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 515 atccatttcttaatgtaagt 534 |||||||||||||||||||| Sbjct: 34860 atccatttcttaatgtaagt 34879
>emb|BX276080.7| Human DNA sequence from clone RP13-463N16 on chromosome 10 Contains the 3' end of a novel gene, complete sequence Length = 7425 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 aatttaacaaaaatatgttt 447 |||||||||||||||||||| Sbjct: 5445 aatttaacaaaaatatgttt 5426
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 ctcgcaatggcgaagggctg 183 |||||||||||||||||||| Sbjct: 1151817 ctcgcaatggcgaagggctg 1151798
>emb|AL355341.19| Human DNA sequence from clone RP11-146P21 on chromosome 10 Contains the 3'end of the PLCE1 gene for phospholipase C, epsilon 1 (PLCE, KIAA1516), the gene for AD24 protein (FLJ12820), the 5'end of a novel gene (KIAA0608) and a CpG island, complete sequence Length = 153449 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 taattataaatttaacaaaa 439 |||||||||||||||||||| Sbjct: 98227 taattataaatttaacaaaa 98208
>emb|AL356268.12| Human DNA sequence from clone RP11-134P2 on chromosome 10 Contains part of the HPSE2 gene for heparanase 2, complete sequence Length = 127381 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 424 tataaatttaacaaaaatat 443 |||||||||||||||||||| Sbjct: 72788 tataaatttaacaaaaatat 72807
>emb|AL354804.15| Human DNA sequence from clone RP4-708H13 on chromosome 20 Contains GSSs, complete sequence Length = 38844 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 425 ataaatttaacaaaaatatg 444 |||||||||||||||||||| Sbjct: 23765 ataaatttaacaaaaatatg 23784
>emb|AL158819.14| Human DNA sequence from clone RP11-382F24 on chromosome X Contains a NADH dehydrogenase 2 (MTND2) pseudogene, a NADH dehydrogenase 1 (MTND1) pseudogene, the gene for PAGE-5 protein (PAGE-5) and two novel genes, complete sequence Length = 174913 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 425 ataaatttaacaaaaatatg 444 |||||||||||||||||||| Sbjct: 109847 ataaatttaacaaaaatatg 109828
>emb|AL049632.10|HSDJ913G4 Human DNA sequence from clone RP5-913G4 on chromosome 20 Contains part of the PLCB1 gene for phospholipase C beta 1 (phosphoinositide-specific) and a CpG island, complete sequence Length = 51150 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 435 caaaaatatgtttcttgtataagatttt 462 ||||||||||||||| |||||| ||||| Sbjct: 27081 caaaaatatgtttctggtataatatttt 27054
>emb|AL033377.2|HS287G14 Human DNA sequence from clone RP1-287G14 on chromosome 6q23.1-24.3 Contains the 3' end of a novel gene, a novel gene and the DKFZP564D0462 (FLJ14937) gene for a novel protein, complete sequence Length = 135090 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 atgcctatcattacaatatt 99 |||||||||||||||||||| Sbjct: 91331 atgcctatcattacaatatt 91350
>emb|CR788312.9| Zebrafish DNA sequence from clone DKEY-192D9, complete sequence Length = 177966 Score = 40.1 bits (20), Expect = 8.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 418 aataattataaatt-taacaaaaatatg 444 |||||||||||||| ||||||||||||| Sbjct: 46178 aataattataaattctaacaaaaatatg 46205
>emb|AL772266.6| Zebrafish DNA sequence from clone CH211-147H1 in linkage group 12 Contains a novel gene similar to mouse Grid2ip (ionotropic glutamate receptor delta 2 (Grid2) interacting protein 1), a novel gene similar to zebrafish pim1, a novel gene similar to vertebrate RGS9 (regulator of G-protein signalling 9) and two CpG islands, complete sequence Length = 179911 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 536 aaagaaaattatatatcact 555 |||||||||||||||||||| Sbjct: 170193 aaagaaaattatatatcact 170174
>emb|AJ851505.1| Gallus gallus mRNA for hypothetical protein, clone 4b8 Length = 2641 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 atatgcctatcattacaata 97 |||||||||||||||||||| Sbjct: 943 atatgcctatcattacaata 962
>emb|BX511166.9| Zebrafish DNA sequence from clone RP71-84B10 in linkage group 13, complete sequence Length = 152870 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 420 taattataaatttaacaaaaatat 443 ||||||||||||||| |||||||| Sbjct: 3082 taattataaatttaaaaaaaatat 3059
>emb|BX323590.8| Zebrafish DNA sequence from clone CH211-42I9 in linkage group 1, complete sequence Length = 178876 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 531 aagttaaagaaaattatatatcac 554 |||||||| ||||||||||||||| Sbjct: 126081 aagttaaataaaattatatatcac 126058
>gb|AC100854.2| Homo sapiens chromosome 8, clone RP11-578O24, complete sequence Length = 133181 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 gtttcttgtataagattttt 463 |||||||||||||||||||| Sbjct: 102908 gtttcttgtataagattttt 102889
>gb|AC092185.3| Homo sapiens 3q BAC RP11-148O7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 165962 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 531 aagttaaagaaaattatata 550 |||||||||||||||||||| Sbjct: 8106 aagttaaagaaaattatata 8125
>gb|AC092919.5| Homo sapiens 3q BAC RP11-185E8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 101121 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 565 aactacagtgctactatcac 584 |||||||||||||||||||| Sbjct: 12068 aactacagtgctactatcac 12049
>gb|AC108103.2| Homo sapiens chromosome 5 clone RP11-197O8, complete sequence Length = 151884 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 481 attcatatcaattacttgtt 500 |||||||||||||||||||| Sbjct: 151272 attcatatcaattacttgtt 151291
>gb|AC078909.7| Homo sapiens chromosome 15, clone RP11-128A17, complete sequence Length = 170257 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 531 aagttaaagaaaattatata 550 |||||||||||||||||||| Sbjct: 115587 aagttaaagaaaattatata 115606
>gb|AC068700.5| Homo sapiens chromosome 8, clone RP11-594N15, complete sequence Length = 182860 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 444 gtttcttgtataagattttt 463 |||||||||||||||||||| Sbjct: 151751 gtttcttgtataagattttt 151770
>gb|AC069483.6| Homo sapiens, clone RP11-29M5, complete sequence Length = 151321 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 531 aagttaaagaaaattatata 550 |||||||||||||||||||| Sbjct: 17269 aagttaaagaaaattatata 17288
>gb|AC046174.6| Homo sapiens chromosome 8, clone RP11-621B3, complete sequence Length = 161619 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 519 atttcttaatgtaagttaaa 538 |||||||||||||||||||| Sbjct: 97791 atttcttaatgtaagttaaa 97772
>gb|AC026720.6| Homo sapiens chromosome 5 clone CTD-2193G21, complete sequence Length = 151090 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 448 cttgtataagatttttcact 467 |||||||||||||||||||| Sbjct: 71687 cttgtataagatttttcact 71706
>gb|AC008693.9| Homo sapiens chromosome 5 clone CTB-69A13, complete sequence Length = 203568 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 448 cttgtataagatttttcact 467 |||||||||||||||||||| Sbjct: 45126 cttgtataagatttttcact 45145
>gb|AY112989.1| Clostridium butyricum two-component sensor histidine kinase (dhaS) and two-component response regulator (dhaA) genes, complete cds; and 1,3-propanediol operon, complete sequence Length = 9071 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 412 aactgaaataattataaatt 431 |||||||||||||||||||| Sbjct: 1114 aactgaaataattataaatt 1095
>gb|AC024565.6| Homo sapiens chromosome 5 clone CTD-2104P22, complete sequence Length = 108039 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 481 attcatatcaattacttgtt 500 |||||||||||||||||||| Sbjct: 6823 attcatatcaattacttgtt 6842
>emb|CR387863.1| Gallus gallus finished cDNA, clone ChEST329l15 Length = 924 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 atatgcctatcattacaata 97 |||||||||||||||||||| Sbjct: 112 atatgcctatcattacaata 131
>emb|BX004830.7| Zebrafish DNA sequence from clone CH211-159I8 in linkage group 14, complete sequence Length = 201070 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 395 gtgttttgaaaaacatgaac 414 |||||||||||||||||||| Sbjct: 103526 gtgttttgaaaaacatgaac 103507
>gb|AC011915.5|AC011915 Arabidopsis thaliana chromosome 1 BAC T26J14 genomic sequence, complete sequence Length = 73635 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 tgaaataattataaatttaa 434 |||||||||||||||||||| Sbjct: 58749 tgaaataattataaatttaa 58730
>gb|AC011000.3|F16P17 Sequence of BAC F16P17 from Arabidopsis thaliana chromosome 1, complete sequence Length = 98412 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 532 agttaaagaaaattatatat 551 |||||||||||||||||||| Sbjct: 5841 agttaaagaaaattatatat 5860
>gb|AC117651.8| Mus musculus chromosome 3, clone RP23-287I17, complete sequence Length = 229602 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 417 aaataattataaatttaacaaaaa 440 |||||||||||||||||| ||||| Sbjct: 67641 aaataattataaatttaagaaaaa 67664
>emb|AL512791.3|CNS07EFF Human chromosome 14 DNA sequence BAC R-471B22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 178834 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 tatcattacaatattacaat 104 |||||||||||||||||||| Sbjct: 163828 tatcattacaatattacaat 163809
>emb|CT571266.4| Mouse DNA sequence from clone RP23-255L13 on chromosome 13, complete sequence Length = 176074 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 524 ttaatgtaagttaaagaaaattatatat 551 |||| |||||||||| |||||||||||| Sbjct: 85395 ttaaggtaagttaaaaaaaattatatat 85368
>gb|AY104961.1| Zea mays PCO142642 mRNA sequence Length = 809 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 tgtatgaaatgaaatgttaa 328 |||||||||||||||||||| Sbjct: 721 tgtatgaaatgaaatgttaa 740
>gb|AC006536.2|AC006536 Homo sapiens chromosome 14 clone BAC257P13 map 14q31, complete sequence Length = 185402 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 tatcattacaatattacaat 104 |||||||||||||||||||| Sbjct: 123603 tatcattacaatattacaat 123584
>gb|AE003801.4| Drosophila melanogaster chromosome 2R, section 49 of 73 of the complete sequence Length = 254899 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 attataaatttaacaaaaat 441 |||||||||||||||||||| Sbjct: 109368 attataaatttaacaaaaat 109387
>emb|AL096869.8|CNS00YVH Human chromosome 14 DNA sequence BAC R-1078H9 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 228097 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 tatcattacaatattacaat 104 |||||||||||||||||||| Sbjct: 152452 tatcattacaatattacaat 152471
>gb|AC091272.12| Mus musculus chromosome 1, clone RP23-74B7, complete sequence Length = 252476 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 tgtttcttgtataagatttt 462 |||||||||||||||||||| Sbjct: 190981 tgtttcttgtataagatttt 190962
>gb|AC148053.3| Carollia perspicillata clone 594J14, complete sequence Length = 125844 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 cattacaatattacaatctt 107 |||||||||||||||||||| Sbjct: 28721 cattacaatattacaatctt 28702
>gb|AE016830.1| Enterococcus faecalis V583, complete genome Length = 3218031 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 aagttgtacatgtttaatcc 69 |||||||||||||||||||| Sbjct: 1583579 aagttgtacatgtttaatcc 1583598
>gb|AC005298.1|AC005298 Drosophila melanogaster DNA sequence (P1s DS04841 (D188) and DS08189 (D218)), complete sequence Length = 95272 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 attataaatttaacaaaaat 441 |||||||||||||||||||| Sbjct: 8470 attataaatttaacaaaaat 8489
>gb|AC133097.3| Mus musculus BAC clone RP23-287O2 from 1, complete sequence Length = 199276 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 436 aaaaatatgtttcttgtata 455 |||||||||||||||||||| Sbjct: 158089 aaaaatatgtttcttgtata 158070
>gb|AC156158.1| Homo sapiens chromosome 10 clone WI2-1708O12, complete sequence Length = 43308 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 428 aatttaacaaaaatatgttt 447 |||||||||||||||||||| Sbjct: 12274 aatttaacaaaaatatgttt 12255
>gb|DP000018.1| Carollia perspicillata target 1 genomic scaffold Length = 1501503 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 cattacaatattacaatctt 107 |||||||||||||||||||| Sbjct: 1080939 cattacaatattacaatctt 1080920
>emb|AL627409.9| Mouse DNA sequence from clone RP23-430L23 on chromosome X, complete sequence Length = 189295 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 620 tttagtgaaatacactaaca 639 |||||||||||||||||||| Sbjct: 121149 tttagtgaaatacactaaca 121168
>emb|AL672070.12| Mouse DNA sequence from clone RP23-115A1 on chromosome 9, complete sequence Length = 197912 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 591 taaatagacagaactcatat 610 |||||||||||||||||||| Sbjct: 34271 taaatagacagaactcatat 34290 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8,384,490 Number of Sequences: 3902068 Number of extensions: 8384490 Number of successful extensions: 208005 Number of sequences better than 10.0: 104 Number of HSP's better than 10.0 without gapping: 103 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 207523 Number of HSP's gapped (non-prelim): 486 length of query: 652 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 629 effective length of database: 17,143,297,704 effective search space: 10783134255816 effective search space used: 10783134255816 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
