Clone Name	rbags12d15
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	ref|XM_483192.1| Oryza sativa (japonica cultivar-group), mRNA	295	8e-77
2	dbj|AK101328.1| Oryza sativa (japonica cultivar-group) cDNA clon...	295	8e-77
3	gb|AY110296.1| Zea mays CL11152_1 mRNA sequence	224	3e-55
4	dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D...	163	8e-37
5	dbj|AP003892.3| Oryza sativa (japonica cultivar-group) genomic D...	163	8e-37
6	gb|AC115634.2| Oryza sativa (japonica cultivar-group) chromosome...	123	7e-25
7	dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D...	123	7e-25
8	gb|DQ207724.1| Zea mays cultivar B73 IDP525 marker	54	5e-04
9	gb|AC116588.3| Mus musculus BAC clone RP23-448E6 from 9, complet...	44	0.51
10	gb|AY312423.1| Otus elegans clone Oe050 microsatellite sequence	42	2.0
11	emb|AL135785.10| Human DNA sequence from clone RP11-113O24 on ch...	42	2.0
12	emb|CR956647.7| Pig DNA sequence from clone CH242-38B5 on chromo...	40	8.0
13	emb|AJ131112.2|SSC131112 Sus scrofa MHC class I SLA genes, haplo...	40	8.0
14	emb|CR974460.5| Pig DNA sequence from clone PigE-150I6 on chromo...	40	8.0
15	emb|CT009560.9| Pig DNA sequence from clone CH242-4C12 on chromo...	40	8.0
16	gb|AC127228.3| Mus musculus BAC clone RP24-539P4 from chromosome...	40	8.0
17	emb|CR956396.6| Pig DNA sequence from clone CH242-205N12 on chro...	40	8.0
18	emb|CR956410.6| Pig DNA sequence from clone PigE-123H20 on chrom...	40	8.0
19	gb|AC119851.9| Mus musculus chromosome 7, clone RP23-106N20, com...	40	8.0
20	emb|AL590809.5| Human DNA sequence from clone RP11-733H21 on chr...	40	8.0
21	emb|AL160395.24| Human DNA sequence from clone RP11-474D23 on ch...	40	8.0
22	emb|AJ427478.2|SSC427478 Sus scrofa ASIP gene for agouti signall...	40	8.0
23	emb|CR853303.6| Pig DNA sequence from clone PigE-173F2, complete...	40	8.0
24	gb|AC091723.3| Sus scrofa clone RP44-349L7, complete sequence	40	8.0
25	gb|AF067624.1| Caenorhabditis elegans cosmid M01B12, complete se...	40	8.0
26	gb|DP000062.1| Sus scrofa target 117 genomic scaffold	40	8.0
27	dbj|AB158488.1| Sus scrofa TRIM39, FLJ22638, GNL1, CAT56 genes, ...	40	8.0
28	gb|AC114796.3| Homo sapiens BAC clone RP11-700B17 from 4, comple...	40	8.0
29	gb|AC159001.2| Mus musculus BAC clone RP24-221A23 from chromosom...	40	8.0
30	emb|BX296548.20| Pig DNA sequence from clone PigE-193I9, complet...	40	8.0
31	dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...	40	8.0
32	dbj|AB206998.1| Sus scrofa ASIP and AHCY genes for agouti signal...	40	8.0
33	gb|AC092875.2| Sus scrofa clone RP44-476K1, complete sequence	40	8.0
34	gb|AC092534.4| Homo sapiens BAC clone RP13-629D7 from 2, complet...	40	8.0
35	gb|DQ020488.1| Sus scrofa clone BAC KNP_798F4, complete sequence	40	8.0
36	gb|AC104483.2| Sus scrofa clone RP44-427G13, complete sequence	40	8.0
37	gb|AC157575.1| Mus musculus BAC clone RP23-16D16 from 9, complet...	40	8.0
38	gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...	40	8.0
39	emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa...	40	8.0
40	emb|CR956648.9| Pig DNA sequence from clone CH242-155F23 on chro...	40	8.0
41	emb|CR974587.14| Pig DNA sequence from clone CH242-288P9 on chro...	40	8.0

---

>ref|XM_483192.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2237

 Score =  295 bits (149), Expect = 8e-77
 Identities = 338/401 (84%)
 Strand = Plus / Minus

                                                                        
Query: 106  acttcaagggaggacttcgcaagccacagcaacccaggatcgttcctcttcagcaccagg 165
            |||||||| |||| ||| |||||||||||||| |||||||||||||| ||||  |||| |
Sbjct: 2004 acttcaagagaggcctttgcaagccacagcaagccaggatcgttccttttcaataccaag 1945

                                                                        
Query: 166  taggtctccgcacgcccaatctcatccgagacgacatcctcgcagaagccaatcaactcg 225
            || ||||| ||||| |||||||||||||||||||||||||| ||||| |||||||  || 
Sbjct: 1944 taagtctctgcacgaccaatctcatccgagacgacatcctcacagaaaccaatcagttca 1885

                                                                        
Query: 226  aggacctccatcgcagctttgtaattcaccacgctcctttggaaatgcggattggtcttg 285
            ||||||||||| ||||||||||| ||| |||| ||||||||||| || ||||||| ||| 
Sbjct: 1884 aggacctccattgcagctttgtagttcgccacactcctttggaactgtggattggactta 1825

                                                                        
Query: 286  cgcaatcttctataacgaatgtcgttcgggttctctatcacattcttgataattttgaag 345
            |||| ||| || ||    || || |  |||| |||||||||||||||||| || || |||
Sbjct: 1824 cgcagtctcctgtacttgatatcatgtgggtgctctatcacattcttgatgatcttaaag 1765

                                                                        
Query: 346  agtgtttgaagtgcagaggctgcctctgaaggtgttgcttgcgaccggagcatttcaata 405
            ||||||||||| ||||| | |||||||| |||||||||||| || || ||||||||||| 
Sbjct: 1764 agtgtttgaagagcagaagttgcctctgtaggtgttgcttgtgagcgaagcatttcaatg 1705

                                                                        
Query: 406  gccttctggaggcgcgaacagagggctgccactggctcttctattctttgcagctcatcg 465
            |||||||| ||||| | |||||||||||||||||| ||||| || || || ||||||  |
Sbjct: 1704 gccttctgaaggcgtgcacagagggctgccactggttcttcgatcctctggagctcactg 1645

                                                     
Query: 466  ctctttaaattagcagcatgatcgtcagggtcaggttcaga 506
             | ||| |||||||||||||||| ||||| ||||| |||||
Sbjct: 1644 atgtttgaattagcagcatgatcatcaggatcaggctcaga 1604

---

>dbj|AK101328.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034G12, full
            insert sequence
          Length = 2575

 Score =  295 bits (149), Expect = 8e-77
 Identities = 338/401 (84%)
 Strand = Plus / Minus

                                                                        
Query: 106  acttcaagggaggacttcgcaagccacagcaacccaggatcgttcctcttcagcaccagg 165
            |||||||| |||| ||| |||||||||||||| |||||||||||||| ||||  |||| |
Sbjct: 2341 acttcaagagaggcctttgcaagccacagcaagccaggatcgttccttttcaataccaag 2282

                                                                        
Query: 166  taggtctccgcacgcccaatctcatccgagacgacatcctcgcagaagccaatcaactcg 225
            || ||||| ||||| |||||||||||||||||||||||||| ||||| |||||||  || 
Sbjct: 2281 taagtctctgcacgaccaatctcatccgagacgacatcctcacagaaaccaatcagttca 2222

                                                                        
Query: 226  aggacctccatcgcagctttgtaattcaccacgctcctttggaaatgcggattggtcttg 285
            ||||||||||| ||||||||||| ||| |||| ||||||||||| || ||||||| ||| 
Sbjct: 2221 aggacctccattgcagctttgtagttcgccacactcctttggaactgtggattggactta 2162

                                                                        
Query: 286  cgcaatcttctataacgaatgtcgttcgggttctctatcacattcttgataattttgaag 345
            |||| ||| || ||    || || |  |||| |||||||||||||||||| || || |||
Sbjct: 2161 cgcagtctcctgtacttgatatcatgtgggtgctctatcacattcttgatgatcttaaag 2102

                                                                        
Query: 346  agtgtttgaagtgcagaggctgcctctgaaggtgttgcttgcgaccggagcatttcaata 405
            ||||||||||| ||||| | |||||||| |||||||||||| || || ||||||||||| 
Sbjct: 2101 agtgtttgaagagcagaagttgcctctgtaggtgttgcttgtgagcgaagcatttcaatg 2042

                                                                        
Query: 406  gccttctggaggcgcgaacagagggctgccactggctcttctattctttgcagctcatcg 465
            |||||||| ||||| | |||||||||||||||||| ||||| || || || ||||||  |
Sbjct: 2041 gccttctgaaggcgtgcacagagggctgccactggttcttcgatcctctggagctcactg 1982

                                                     
Query: 466  ctctttaaattagcagcatgatcgtcagggtcaggttcaga 506
             | ||| |||||||||||||||| ||||| ||||| |||||
Sbjct: 1981 atgtttgaattagcagcatgatcatcaggatcaggctcaga 1941

---

>gb|AY110296.1| Zea mays CL11152_1 mRNA sequence
          Length = 1213

 Score =  224 bits (113), Expect = 3e-55
 Identities = 326/397 (82%)
 Strand = Plus / Minus

                                                                       
Query: 109 tcaagggaggacttcgcaagccacagcaacccaggatcgttcctcttcagcaccaggtag 168
           |||||||| ||||| || ||||| ||||| |||||||| ||||| ||||  |||||||| 
Sbjct: 882 tcaagggatgactttgccagccatagcaatccaggatcattccttttcaataccaggtaa 823

                                                                       
Query: 169 gtctccgcacgcccaatctcatccgagacgacatcctcgcagaagccaatcaactcgagg 228
           ||||| |||||||||| |||||| ||||  |||||||| ||||| |||||||| || || 
Sbjct: 822 gtctcagcacgcccaacctcatctgagattacatcctcacagaaaccaatcaattcaaga 763

                                                                       
Query: 229 acctccatcgcagctttgtaattcaccacgctcctttggaaatgcggattggtcttgcgc 288
           |||||||| |||||||| || ||  | ||||||||||||||||| ||||||| ||| |||
Sbjct: 762 acctccattgcagctttatagtttgctacgctcctttggaaatgtggattggacttacgc 703

                                                                       
Query: 289 aatcttctataacgaatgtcgttcgggttctctatcacattcttgataattttgaagagt 348
           |||||  ||||   |||||| || || | |||||| |||||||||||||| || ||||| 
Sbjct: 702 aatctcttatacttaatgtcatttggatgctctataacattcttgataatcttaaagaga 643

                                                                       
Query: 349 gtttgaagtgcagaggctgcctctgaaggtgttgcttgcgaccggagcatttcaatagcc 408
           |||||||  |||||  ||||||||  ||||||||||||| |||| ||||| | ||| | |
Sbjct: 642 gtttgaatagcagactctgcctctacaggtgttgcttgcaaccgaagcatcttaatggac 583

                                                                       
Query: 409 ttctggaggcgcgaacagagggctgccactggctcttctattctttgcagctcatcgctc 468
           |||||||| || ||||||||||||  |||||| ||||| |  ||||||||||||| | | 
Sbjct: 582 ttctggagtcgtgaacagagggctctcactggttcttcaaccctttgcagctcattgatg 523

                                                
Query: 469 tttaaattagcagcatgatcgtcagggtcaggttcag 505
           ||| | | | || ||||||||||||| ||||||||||
Sbjct: 522 tttgagtcaccaacatgatcgtcaggatcaggttcag 486

---

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  163 bits (82), Expect = 8e-37
 Identities = 166/194 (85%)
 Strand = Plus / Minus

                                                                            
Query: 313      gggttctctatcacattcttgataattttgaagagtgtttgaagtgcagaggctgcctct 372
                |||| |||||||||||||||||| || || |||||||||||||| ||||| | |||||||
Sbjct: 24723344 gggtgctctatcacattcttgatgatcttaaagagtgtttgaagagcagaagttgcctct 24723285

                                                                            
Query: 373      gaaggtgttgcttgcgaccggagcatttcaatagccttctggaggcgcgaacagagggct 432
                | |||||||||||| || || ||||||||||| |||||||| ||||| | ||||||||||
Sbjct: 24723284 gtaggtgttgcttgtgagcgaagcatttcaatggccttctgaaggcgtgcacagagggct 24723225

                                                                            
Query: 433      gccactggctcttctattctttgcagctcatcgctctttaaattagcagcatgatcgtca 492
                |||||||| ||||| || || || ||||||  | | ||| |||||||||||||||| |||
Sbjct: 24723224 gccactggttcttcgatcctctggagctcactgatgtttgaattagcagcatgatcatca 24723165

                              
Query: 493      gggtcaggttcaga 506
                || ||||| |||||
Sbjct: 24723164 ggatcaggctcaga 24723151



 Score =  139 bits (70), Expect = 1e-29
 Identities = 121/138 (87%)
 Strand = Plus / Minus

                                                                            
Query: 106      acttcaagggaggacttcgcaagccacagcaacccaggatcgttcctcttcagcaccagg 165
                |||||||| |||| ||| |||||||||||||| |||||||||||||| ||||  |||| |
Sbjct: 24723743 acttcaagagaggcctttgcaagccacagcaagccaggatcgttccttttcaataccaag 24723684

                                                                            
Query: 166      taggtctccgcacgcccaatctcatccgagacgacatcctcgcagaagccaatcaactcg 225
                || ||||| ||||| |||||||||||||||||||||||||| ||||| |||||||  || 
Sbjct: 24723683 taagtctctgcacgaccaatctcatccgagacgacatcctcacagaaaccaatcagttca 24723624

                                  
Query: 226      aggacctccatcgcagct 243
                ||||||||||| ||||||
Sbjct: 24723623 aggacctccattgcagct 24723606

---

>dbj|AP003892.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1345_D02
          Length = 159613

 Score =  163 bits (82), Expect = 8e-37
 Identities = 166/194 (85%)
 Strand = Plus / Minus

                                                                         
Query: 313   gggttctctatcacattcttgataattttgaagagtgtttgaagtgcagaggctgcctct 372
             |||| |||||||||||||||||| || || |||||||||||||| ||||| | |||||||
Sbjct: 24145 gggtgctctatcacattcttgatgatcttaaagagtgtttgaagagcagaagttgcctct 24086

                                                                         
Query: 373   gaaggtgttgcttgcgaccggagcatttcaatagccttctggaggcgcgaacagagggct 432
             | |||||||||||| || || ||||||||||| |||||||| ||||| | ||||||||||
Sbjct: 24085 gtaggtgttgcttgtgagcgaagcatttcaatggccttctgaaggcgtgcacagagggct 24026

                                                                         
Query: 433   gccactggctcttctattctttgcagctcatcgctctttaaattagcagcatgatcgtca 492
             |||||||| ||||| || || || ||||||  | | ||| |||||||||||||||| |||
Sbjct: 24025 gccactggttcttcgatcctctggagctcactgatgtttgaattagcagcatgatcatca 23966

                           
Query: 493   gggtcaggttcaga 506
             || ||||| |||||
Sbjct: 23965 ggatcaggctcaga 23952



 Score =  139 bits (70), Expect = 1e-29
 Identities = 121/138 (87%)
 Strand = Plus / Minus

                                                                         
Query: 106   acttcaagggaggacttcgcaagccacagcaacccaggatcgttcctcttcagcaccagg 165
             |||||||| |||| ||| |||||||||||||| |||||||||||||| ||||  |||| |
Sbjct: 24544 acttcaagagaggcctttgcaagccacagcaagccaggatcgttccttttcaataccaag 24485

                                                                         
Query: 166   taggtctccgcacgcccaatctcatccgagacgacatcctcgcagaagccaatcaactcg 225
             || ||||| ||||| |||||||||||||||||||||||||| ||||| |||||||  || 
Sbjct: 24484 taagtctctgcacgaccaatctcatccgagacgacatcctcacagaaaccaatcagttca 24425

                               
Query: 226   aggacctccatcgcagct 243
             ||||||||||| ||||||
Sbjct: 24424 aggacctccattgcagct 24407

---

>gb|AC115634.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1653_D06,
             complete sequence
          Length = 71193

 Score =  123 bits (62), Expect = 7e-25
 Identities = 119/138 (86%)
 Strand = Plus / Minus

                                                                         
Query: 106   acttcaagggaggacttcgcaagccacagcaacccaggatcgttcctcttcagcaccagg 165
             |||||||| |||||||| ||||||||| |||| | |||||||||||| ||||  |||| |
Sbjct: 27038 acttcaagagaggactttgcaagccacggcaagctaggatcgttccttttcaataccaag 26979

                                                                         
Query: 166   taggtctccgcacgcccaatctcatccgagacgacatcctcgcagaagccaatcaactcg 225
             || ||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||| || 
Sbjct: 26978 taagtctctgcacgaccaatctcatccgagacaacatcctcacagaaaccaatcaattca 26919

                               
Query: 226   aggacctccatcgcagct 243
             |||| |||||| ||||||
Sbjct: 26918 aggaactccattgcagct 26901



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 87/102 (85%), Gaps = 2/102 (1%)
 Strand = Plus / Minus

                                                                         
Query: 313   gggttctctatcacattcttgataat-tttgaagagtgtttgaagtgcagaggctgcctc 371
             |||| |||||||||||||||||| || ||  |||||||||||||  ||||| | ||||||
Sbjct: 24688 gggtgctctatcacattcttgatgatcttaaaagagtgtttgaatagcagaagttgcctc 24629

                                                       
Query: 372   tgaaggtgttgcttgcgaccggagcatttcaatagccttctg 413
             || ||||||| |||| || || ||||||||||| ||||||||
Sbjct: 24628 tgcaggtgtt-cttgtgagcgaagcatttcaatggccttctg 24588

---

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  123 bits (62), Expect = 7e-25
 Identities = 119/138 (86%)
 Strand = Plus / Minus

                                                                            
Query: 106      acttcaagggaggacttcgcaagccacagcaacccaggatcgttcctcttcagcaccagg 165
                |||||||| |||||||| ||||||||| |||| | |||||||||||| ||||  |||| |
Sbjct: 10810106 acttcaagagaggactttgcaagccacggcaagctaggatcgttccttttcaataccaag 10810047

                                                                            
Query: 166      taggtctccgcacgcccaatctcatccgagacgacatcctcgcagaagccaatcaactcg 225
                || ||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||| || 
Sbjct: 10810046 taagtctctgcacgaccaatctcatccgagacaacatcctcacagaaaccaatcaattca 10809987

                                  
Query: 226      aggacctccatcgcagct 243
                |||| |||||| ||||||
Sbjct: 10809986 aggaactccattgcagct 10809969



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 87/102 (85%), Gaps = 2/102 (1%)
 Strand = Plus / Minus

                                                                            
Query: 313      gggttctctatcacattcttgataat-tttgaagagtgtttgaagtgcagaggctgcctc 371
                |||| |||||||||||||||||| || ||  |||||||||||||  ||||| | ||||||
Sbjct: 10807756 gggtgctctatcacattcttgatgatcttaaaagagtgtttgaatagcagaagttgcctc 10807697

                                                          
Query: 372      tgaaggtgttgcttgcgaccggagcatttcaatagccttctg 413
                || ||||||| |||| || || ||||||||||| ||||||||
Sbjct: 10807696 tgcaggtgtt-cttgtgagcgaagcatttcaatggccttctg 10807656

---

>gb|DQ207724.1| Zea mays cultivar B73 IDP525 marker
          Length = 286

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 51/59 (86%)
 Strand = Plus / Plus

                                                                      
Query: 109 tcaagggaggacttcgcaagccacagcaacccaggatcgttcctcttcagcaccaggta 167
           |||||||||||||| || ||||| ||||| |||||||| ||||| ||||  ||||||||
Sbjct: 224 tcaagggaggactttgccagccatagcaatccaggatcattccttttcaataccaggta 282

---

>gb|AC116588.3| Mus musculus BAC clone RP23-448E6 from 9, complete sequence
          Length = 189927

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 465   gctctttaaattagcagcatga 486
             ||||||||||||||||||||||
Sbjct: 81446 gctctttaaattagcagcatga 81425

---

>gb|AY312423.1| Otus elegans clone Oe050 microsatellite sequence
          Length = 500

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 336 aattttgaagagtgtttgaag 356
           |||||||||||||||||||||
Sbjct: 162 aattttgaagagtgtttgaag 142

---

>emb|AL135785.10| Human DNA sequence from clone RP11-113O24 on chromosome 9p11-13.3
             Contains a novel gene, possible ortholog of mouse
             insulin-like growth factor binding protein 7 (IGFBP7), a
             novel gene similar to aldehyde dehydrogenase 1 family,
             member B1 (ALDH5, ALDHX, MGC2230) (ALDH1B1), a novel gene
             and four CpG islands, complete sequence
          Length = 166207

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 363   ggctgcctctgaaggtgttgc 383
             |||||||||||||||||||||
Sbjct: 79819 ggctgcctctgaaggtgttgc 79799

---

>emb|CR956647.7| Pig DNA sequence from clone CH242-38B5 on chromosome 4, complete sequence
          Length = 131053

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 127    agccacagcaacccaggatc 146
              ||||||||||||||||||||
Sbjct: 114977 agccacagcaacccaggatc 114996

---

>emb|AJ131112.2|SSC131112 Sus scrofa MHC class I SLA genes, haplotype H01, clone BAC 490B10
          Length = 154782

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 127    agccacagcaacccaggatc 146
              ||||||||||||||||||||
Sbjct: 114031 agccacagcaacccaggatc 114012

---

>emb|CR974460.5| Pig DNA sequence from clone PigE-150I6 on chromosome 7, complete
             sequence
          Length = 122162

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   agccacagcaacccaggatc 146
             ||||||||||||||||||||
Sbjct: 76694 agccacagcaacccaggatc 76713

---

>emb|CT009560.9| Pig DNA sequence from clone CH242-4C12 on chromosome 17, complete
             sequence
          Length = 166118

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   agccacagcaacccaggatc 146
             ||||||||||||||||||||
Sbjct: 29160 agccacagcaacccaggatc 29141

---

>gb|AC127228.3| Mus musculus BAC clone RP24-539P4 from chromosome 7, complete sequence
          Length = 164223

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 329    tcttgataattttgaagagtgttt 352
              |||||| |||||||||||||||||
Sbjct: 105946 tcttgagaattttgaagagtgttt 105969

---

>emb|CR956396.6| Pig DNA sequence from clone CH242-205N12 on chromosome 7, complete
              sequence
          Length = 175108

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 127    agccacagcaacccaggatc 146
              ||||||||||||||||||||
Sbjct: 162018 agccacagcaacccaggatc 162037

---

>emb|CR956410.6| Pig DNA sequence from clone PigE-123H20 on chromosome 7, complete
              sequence
          Length = 175487

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 127    agccacagcaacccaggatc 146
              ||||||||||||||||||||
Sbjct: 144535 agccacagcaacccaggatc 144516

---

>gb|AC119851.9| Mus musculus chromosome 7, clone RP23-106N20, complete sequence
          Length = 226307

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 329   tcttgataattttgaagagtgttt 352
             |||||| |||||||||||||||||
Sbjct: 23286 tcttgagaattttgaagagtgttt 23309

---

>emb|AL590809.5| Human DNA sequence from clone RP11-733H21 on chromosome Xq23-24,
             complete sequence
          Length = 105329

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 147   gttcctcttcagcaccaggt 166
             ||||||||||||||||||||
Sbjct: 25779 gttcctcttcagcaccaggt 25760

---

>emb|AL160395.24| Human DNA sequence from clone RP11-474D23 on chromosome 13q33.1-34
              Contains a the 3' end of a novel gene (MGC35169) and 2 CpG
              islands, complete sequence
          Length = 179959

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 328    ttcttgataattttgaagag 347
              ||||||||||||||||||||
Sbjct: 126184 ttcttgataattttgaagag 126203

---

>emb|AJ427478.2|SSC427478 Sus scrofa ASIP gene for agouti signalling protein and AHCY gene for
              S-adenosylhomocysteine hydrolase
          Length = 204138

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 127    agccacagcaacccaggatc 146
              ||||||||||||||||||||
Sbjct: 148219 agccacagcaacccaggatc 148238

---

>emb|CR853303.6| Pig DNA sequence from clone PigE-173F2, complete sequence
          Length = 151259

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   agccacagcaacccaggatc 146
             ||||||||||||||||||||
Sbjct: 76526 agccacagcaacccaggatc 76545



 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 127  agccacagcaacccaggatc 146
            ||||||||||||||||||||
Sbjct: 7098 agccacagcaacccaggatc 7117

---

>gb|AC091723.3| Sus scrofa clone RP44-349L7, complete sequence
          Length = 76665

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 127  agccacagcaacccaggatc 146
            ||||||||||||||||||||
Sbjct: 6678 agccacagcaacccaggatc 6659

---

>gb|AF067624.1| Caenorhabditis elegans cosmid M01B12, complete sequence
          Length = 34907

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 337   attttgaagagtgtttgaag 356
             ||||||||||||||||||||
Sbjct: 30944 attttgaagagtgtttgaag 30963

---

>gb|DP000062.1| Sus scrofa target 117 genomic scaffold
          Length = 605739

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 127    agccacagcaacccaggatc 146
              ||||||||||||||||||||
Sbjct: 346739 agccacagcaacccaggatc 346758

---

>dbj|AB158488.1| Sus scrofa TRIM39, FLJ22638, GNL1, CAT56 genes, SLA-11 pseudogene,
             complete cds
          Length = 147386

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   agccacagcaacccaggatc 146
             ||||||||||||||||||||
Sbjct: 15925 agccacagcaacccaggatc 15906

---

>gb|AC114796.3| Homo sapiens BAC clone RP11-700B17 from 4, complete sequence
          Length = 39786

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 329   tcttgataattttgaagagt 348
             ||||||||||||||||||||
Sbjct: 22531 tcttgataattttgaagagt 22550

---

>gb|AC159001.2| Mus musculus BAC clone RP24-221A23 from chromosome 9, complete sequence
          Length = 161507

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    tgaaatgtcatgatatacag 50
             ||||||||||||||||||||
Sbjct: 24000 tgaaatgtcatgatatacag 23981

---

>emb|BX296548.20| Pig DNA sequence from clone PigE-193I9, complete sequence
          Length = 172252

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   agccacagcaacccaggatc 146
             ||||||||||||||||||||
Sbjct: 82183 agccacagcaacccaggatc 82202

---

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 441      ctcttctattctttgcagct 460
                ||||||||||||||||||||
Sbjct: 10059259 ctcttctattctttgcagct 10059240

---

>dbj|AB206998.1| Sus scrofa ASIP and AHCY genes for agouti signaling protein and
             S-adenosylhomocysteine hydrolase, complete cds
          Length = 127234

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   agccacagcaacccaggatc 146
             ||||||||||||||||||||
Sbjct: 29241 agccacagcaacccaggatc 29260

---

>gb|AC092875.2| Sus scrofa clone RP44-476K1, complete sequence
          Length = 155710

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   agccacagcaacccaggatc 146
             ||||||||||||||||||||
Sbjct: 24945 agccacagcaacccaggatc 24926

---

>gb|AC092534.4| Homo sapiens BAC clone RP13-629D7 from 2, complete sequence
          Length = 33335

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 513   aattgagtggtttctgctct 532
             ||||||||||||||||||||
Sbjct: 18715 aattgagtggtttctgctct 18696

---

>gb|DQ020488.1| Sus scrofa clone BAC KNP_798F4, complete sequence
          Length = 125904

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   agccacagcaacccaggatc 146
             ||||||||||||||||||||
Sbjct: 68226 agccacagcaacccaggatc 68245

---

>gb|AC104483.2| Sus scrofa clone RP44-427G13, complete sequence
          Length = 93393

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   agccacagcaacccaggatc 146
             ||||||||||||||||||||
Sbjct: 47778 agccacagcaacccaggatc 47759

---

>gb|AC157575.1| Mus musculus BAC clone RP23-16D16 from 9, complete sequence
          Length = 196682

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 31   tgaaatgtcatgatatacag 50
            ||||||||||||||||||||
Sbjct: 3700 tgaaatgtcatgatatacag 3719

---

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 441      ctcttctattctttgcagct 460
                ||||||||||||||||||||
Sbjct: 10059144 ctcttctattctttgcagct 10059125

---

>emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa0056I18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 145890

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 441    ctcttctattctttgcagct 460
              ||||||||||||||||||||
Sbjct: 103362 ctcttctattctttgcagct 103381

---

>emb|CR956648.9| Pig DNA sequence from clone CH242-155F23 on chromosome 17, complete
             sequence
          Length = 168798

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   agccacagcaacccaggatc 146
             ||||||||||||||||||||
Sbjct: 57612 agccacagcaacccaggatc 57593

---

>emb|CR974587.14| Pig DNA sequence from clone CH242-288P9 on chromosome 7, complete
             sequence
          Length = 165092

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   agccacagcaacccaggatc 146
             ||||||||||||||||||||
Sbjct: 19794 agccacagcaacccaggatc 19775


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,620,987
Number of Sequences: 3902068
Number of extensions: 4620987
Number of successful extensions: 81983
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81711
Number of HSP's gapped (non-prelim): 266
length of query: 591
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 568
effective length of database: 17,143,297,704
effective search space: 9737393095872
effective search space used: 9737393095872
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---