>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score =  168 bits (426), Expect = 1e-41
 Identities = 82/130 (63%), Positives = 98/130 (75%), Gaps = 4/130 (3%)
 Frame = -3

Query: 672  NDIXIXIMDYXSXXTXADVTFRNMWAEFEWEXKVAVNTVIQDEKEFLNHVIKSTNMKCLT 493
            +DI I IMDY    T  D  FR MWAEFEWE KV VNT + D  ++L H++KSTNMKCLT
Sbjct: 820  SDIHIDIMDYIQPATCTDAEFRQMWAEFEWENKVTVNTNVTDLNDYLQHILKSTNMKCLT 879

Query: 492  PPSALDGECGFLAANLYAKSVFGEDALVNISIEKQV----DGKLSGYIRIRSKTQGIALS 325
            P  AL G CGF+AANLYA+S+FGEDAL N+SIEK V    D  ++G+IRIR+K+QG+ALS
Sbjct: 880  PEKALSGYCGFMAANLYARSIFGEDALANVSIEKPVHQGPDAAVTGHIRIRAKSQGMALS 939

Query: 324  LGDKITLKQK 295
            LGDKI L QK
Sbjct: 940  LGDKINLSQK 949

>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score =  167 bits (424), Expect = 2e-41
 Identities = 82/130 (63%), Positives = 98/130 (75%), Gaps = 4/130 (3%)
 Frame = -3

Query: 672  NDIXIXIMDYXSXXTXADVTFRNMWAEFEWEXKVAVNTVIQDEKEFLNHVIKSTNMKCLT 493
            +DI I IMDY    T  D  FR MWAEFEWE KV VNT + D  ++L H++KSTNMKCLT
Sbjct: 820  SDIHIDIMDYIQPATCTDAEFRQMWAEFEWENKVTVNTNMTDLNDYLQHILKSTNMKCLT 879

Query: 492  PPSALDGECGFLAANLYAKSVFGEDALVNISIEKQV----DGKLSGYIRIRSKTQGIALS 325
            P  AL G CGF+AANLYA+S+FGEDAL N+SIEK V    D  ++G+IRIR+K+QG+ALS
Sbjct: 880  PEKALSGYCGFMAANLYARSIFGEDALANVSIEKPVHQGPDAAVTGHIRIRAKSQGMALS 939

Query: 324  LGDKITLKQK 295
            LGDKI L QK
Sbjct: 940  LGDKINLSQK 949

>COPB_DROME (P45437) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 964

 Score =  162 bits (409), Expect = 1e-39
 Identities = 79/129 (61%), Positives = 97/129 (75%), Gaps = 3/129 (2%)
 Frame = -3

Query: 672  NDIXIXIMDYXSXXTXADVTFRNMWAEFEWEXKVAVNTVIQDEKEFLNHVIKSTNMKCLT 493
            N I I IMDY    +  D  FR MW +FEWE KV VNT   D  E+L H++KSTNMKCLT
Sbjct: 830  NTIHIDIMDYIIPASCTDTEFRQMWQDFEWENKVTVNTSFTDLHEYLKHLLKSTNMKCLT 889

Query: 492  PPSALDGECGFLAANLYAKSVFGEDALVNISIEKQV---DGKLSGYIRIRSKTQGIALSL 322
            P  AL G+CGF+AAN+YAKS+FGE+AL N+SIEK V   D K++G+IRIR+K+QG+ALSL
Sbjct: 890  PEKALSGQCGFMAANMYAKSIFGENALANLSIEKPVDDPDSKVTGHIRIRAKSQGMALSL 949

Query: 321  GDKITLKQK 295
            GDKI+  QK
Sbjct: 950  GDKISSSQK 958

>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 953

 Score =  158 bits (399), Expect = 2e-38
 Identities = 78/130 (60%), Positives = 95/130 (73%), Gaps = 4/130 (3%)
 Frame = -3

Query: 672  NDIXIXIMDYXSXXTXADVTFRNMWAEFEWEXKVAVNTVIQDEKEFLNHVIKSTNMKCLT 493
            +DI I IMDY    T  D  FR MWAE EWE KV VNT + D  ++L H++KSTNMKCLT
Sbjct: 820  SDIHIEIMDYIQPATCTDAEFRQMWAELEWENKVTVNTNMVDLNDYLQHILKSTNMKCLT 879

Query: 492  PPSALDGECGFLAANLYAKSVFGEDALVNISIEKQV----DGKLSGYIRIRSKTQGIALS 325
            P  AL G CGF+AANLYA+S+FGEDAL N+S EK +    D  ++ +IRIR+K+QG+ALS
Sbjct: 880  PEKALSGYCGFMAANLYARSIFGEDALANVSSEKPLHQGPDAAVTVHIRIRAKSQGMALS 939

Query: 324  LGDKITLKQK 295
            LGDKI L QK
Sbjct: 940  LGDKINLSQK 949

>COPB_DICDI (Q23924) Probable coatomer subunit beta (Beta-coat protein)|
           (Beta-COP) (Fragment)
          Length = 400

 Score =  136 bits (342), Expect = 7e-32
 Identities = 69/123 (56%), Positives = 87/123 (70%), Gaps = 2/123 (1%)
 Frame = -3

Query: 672 NDIXIXIMDYX--SXXTXADVTFRNMWAEFEWEXKVAVNTVIQDEKEFLNHVIKSTNMKC 499
           N++ I ++DY   +     DV FRN W EFEWE K+ VNT I D  ++++H+ K TNM  
Sbjct: 271 NELHIDVIDYILPANHQYTDVLFRNHWLEFEWENKIPVNTNITDLVKYVHHISKVTNMGI 330

Query: 498 LTPPSALDGECGFLAANLYAKSVFGEDALVNISIEKQVDGKLSGYIRIRSKTQGIALSLG 319
           LTP   L  + G L+ANL AKSVFGEDAL NI IEKQ DGK+SGYIRIR+K Q IA++LG
Sbjct: 331 LTPEVHLSNDTGILSANLCAKSVFGEDALANICIEKQADGKISGYIRIRAKVQSIAVTLG 390

Query: 318 DKI 310
           +KI
Sbjct: 391 EKI 393

>COPB_SCHPO (Q9UUF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 940

 Score =  134 bits (338), Expect = 2e-31
 Identities = 65/119 (54%), Positives = 88/119 (73%), Gaps = 1/119 (0%)
 Frame = -3

Query: 672  NDIXIXIMDYXSXXTXADVTFRNMWAEFEWEXKVAVNTVIQDEK-EFLNHVIKSTNMKCL 496
            N I + I+DY       +  FR+MW EFEWE KV +++       +FL+ ++K TNM CL
Sbjct: 819  NGIPVNIIDYIKPAFIPESQFRSMWTEFEWENKVDISSNEDISLYDFLHKIMKKTNMNCL 878

Query: 495  TPPSALDGECGFLAANLYAKSVFGEDALVNISIEKQVDGKLSGYIRIRSKTQGIALSLG 319
            TP ++L G+CGFL+ANLYA S+FGEDAL+++S+EK V G +SG++RIRSKTQGIALSLG
Sbjct: 879  TPDASLRGDCGFLSANLYACSIFGEDALMSLSVEKSVSGPISGHVRIRSKTQGIALSLG 937

>COPB_YEAST (P41810) Coatomer subunit beta (Beta-coat protein) (Beta-COP)|
          Length = 973

 Score =  122 bits (307), Expect = 8e-28
 Identities = 65/130 (50%), Positives = 84/130 (64%), Gaps = 4/130 (3%)
 Frame = -3

Query: 672  NDIXIXIMDYXSXXTXADVTFRNMWAEFEWEXKVAVNTVIQDEKEFLNHVIKSTNMKCLT 493
            ND+ + IMDY    T  D  FR MW  FEWE K++V + +     +L  ++K TNM  LT
Sbjct: 836  NDVHVDIMDYIKPATADDEHFRTMWNAFEWENKISVKSQLPTLHAYLRELVKGTNMGILT 895

Query: 492  PPSAL-DGECGFLAANLYAKSVFGEDALVNISIEKQVDGKLS---GYIRIRSKTQGIALS 325
            P  +L + +C FL+ NLYAKS FGEDAL N+ IEK  D K +   GY+RIRSK QG+ALS
Sbjct: 896  PSESLGEDDCRFLSCNLYAKSSFGEDALANLCIEK--DSKTNDVIGYVRIRSKGQGLALS 953

Query: 324  LGDKITLKQK 295
            LGD++ L  K
Sbjct: 954  LGDRVALIAK 963

>PHR_SYNLE (P05327) Deoxyribodipyrimidine photo-lyase (EC 4.1.99.3) (DNA|
           photolyase) (Photoreactivating enzyme)
          Length = 483

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = -3

Query: 624 ADVTFRNMWAEFEWEXKVAVNTVIQDEKEFLNHVIKSTNMKCLTPPSALDGECGFLAANL 445
           AD  +R++W +F WE + A+ T     +    + I    M+ LT    +   C  + A+ 
Sbjct: 300 ADGPYRSLWQQFPWENREALFTAWTQAQ--TGYPIVDAAMRQLTETGWMHNRCRMIVASF 357

Query: 444 YAKSV 430
             K +
Sbjct: 358 LTKDL 362


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,485,805
Number of Sequences: 219361
Number of extensions: 1500222
Number of successful extensions: 3396
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3389
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6598423128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)