| Clone Name | rbags11o12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY103740.1| Zea mays PCO120652 mRNA sequence Length = 1013 Score = 466 bits (235), Expect = e-128 Identities = 351/392 (89%) Strand = Plus / Minus Query: 283 ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 342 ||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||| || Sbjct: 631 ttaactgccacccttctgcttgagagtaatcttgtcacctaagctgagtgcaattccctg 572 Query: 343 ggtcttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgct 402 ||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||| Sbjct: 571 ggtcttgctccttattcggatgtaaccactgagcttgccatcatgttgcttctcaatgct 512 Query: 403 aatgttcaccaaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaa 462 ||||||||||||||||| || |||||||| ||||||||||||||||| || |||||||| Sbjct: 511 gatgttcaccaaagcatcctcaccaaacacactctttgcataaagattagcagcaaggaa 452 Query: 463 accacattcgccatcaagcgcggacggtggtgttagacacttcatgtttgttgacttgat 522 ||||||||| || || || || ||||||||||| |||||||||||||||||||||||||| Sbjct: 451 accacattctccgtctagtgcagacggtggtgtcagacacttcatgtttgttgacttgat 392 Query: 523 aacatgattcaagaattccttctcatcttgaattactgtattaactgcaaccttgntttc 582 || |||||||||||||||||||| |||||||| || ||||| ||||| ||||| |||| Sbjct: 391 aatgtgattcaagaattccttctcgtcttgaatcacagtattcactgccaccttattttc 332 Query: 583 ccactcaaattctgcccacatgttccggaaagtaacatctgcncatgtancangtganat 642 ||| ||||||||||||||||||||||||||||||||||| || || ||| || |||| || Sbjct: 331 ccattcaaattctgcccacatgttccggaaagtaacatcagcacaggtagcaggtgagat 272 Query: 643 ataatccatgatgtnaatgngaatatcattta 674 ||||||||||||| ||| |||||||||||| Sbjct: 271 gtaatccatgatgtcgatgtgaatatcattta 240
>ref|XM_462832.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3111 Score = 434 bits (219), Expect = e-118 Identities = 347/392 (88%) Strand = Plus / Minus Query: 283 ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 342 ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || Sbjct: 3111 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 3052 Query: 343 ggtcttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgct 402 ||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| Sbjct: 3051 ggtcttgctccttattctgatgtaaccactgagcttgccatcaaactgcttctcgatgct 2992 Query: 403 aatgttcaccaaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaa 462 || || |||||||||||||| || || || |||||||||||||| || ||||| || || Sbjct: 2991 gatatttaccaaagcatcttcaccgaaaacactctttgcataaaggttagcggcgagaaa 2932 Query: 463 accacattcgccatcaagcgcggacggtggtgttagacacttcatgtttgttgacttgat 522 ||| ||||| || |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 2931 accgcattctccgtcaagcgcagacggtggtgttagacacttcatgtttgttgacttgat 2872 Query: 523 aacatgattcaagaattccttctcatcttgaattactgtattaactgcaaccttgntttc 582 | ||||| ||| || |||||||||| ||||| || ||||| ||||| |||||| |||| Sbjct: 2871 gatatgatccaaaaactccttctcattctgaatgacagtattcactgccaccttgttttc 2812 Query: 583 ccactcaaattctgcccacatgttccggaaagtaacatctgcncatgtancangtganat 642 |||||||||||||||||||||||| |||||||||||||| || || || | |||| || Sbjct: 2811 ccactcaaattctgcccacatgttacggaaagtaacatcagcgcaagttgctggtgagat 2752 Query: 643 ataatccatgatgtnaatgngaatatcattta 674 |||||||||||||| |||| |||||||||||| Sbjct: 2751 ataatccatgatgtcaatgtgaatatcattta 2720
>gb|BT017052.1| Zea mays clone EL01N0353H03.c mRNA sequence Length = 1032 Score = 402 bits (203), Expect = e-109 Identities = 343/392 (87%) Strand = Plus / Minus Query: 283 ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 342 ||||||||| || ||||||||||| || |||||||| || ||||||||||||||||| || Sbjct: 638 ttaactgccacctttctgcttgagagtgatcttgtcccctaagctgagtgcaattccctg 579 Query: 343 ggtcttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgct 402 ||||||||||||||||| ||||| || ||||||||||| ||| ||||||||||||||| Sbjct: 578 ggtcttgctccttattcgaatgtagccactgagcttgccgtcatgttgcttctcaatgct 519 Query: 403 aatgttcaccaaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaa 462 |||||||||||||| || || |||||||| |||||||||||||| || || |||||||| Sbjct: 518 gatgttcaccaaagcgtcctcgccaaacacactctttgcataaaggttagcagcaaggaa 459 Query: 463 accacattcgccatcaagcgcggacggtggtgttagacacttcatgtttgttgacttgat 522 ||||||||| ||||| || || ||||||||||| ||||| |||||||| ||||||||||| Sbjct: 458 accacattccccatccagtgcagacggtggtgtcagacatttcatgttcgttgacttgat 399 Query: 523 aacatgattcaagaattccttctcatcttgaattactgtattaactgcaaccttgntttc 582 || ||||||||||||||||||||||| ||||| || ||||| || || ||||| |||| Sbjct: 398 aatgtgattcaagaattccttctcatcctgaatcacagtattcacagccaccttattttc 339 Query: 583 ccactcaaattctgcccacatgttccggaaagtaacatctgcncatgtancangtganat 642 ||| |||||||||||||||||||||||||||||||||||||| || ||| || |||| || Sbjct: 338 ccattcaaattctgcccacatgttccggaaagtaacatctgcacacgtagcaggtgagat 279 Query: 643 ataatccatgatgtnaatgngaatatcattta 674 ||||||||||||| ||| |||||||||||| Sbjct: 278 gtaatccatgatgtcgatgtgaatatcattta 247
>gb|AY109245.1| Zea mays PCO147899 mRNA sequence Length = 751 Score = 329 bits (166), Expect = 7e-87 Identities = 330/387 (85%) Strand = Plus / Minus Query: 288 tgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtct 347 ||||||||||||| || ||||| ||||||||||| |||||||| |||||||||||||||| Sbjct: 711 tgcctcccttctgttttagggtgatcttgtctcctaagctgagcgcaattccttgggtct 652 Query: 348 tgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgctaatgt 407 |||| ||||| |||||||| || | | ||||||||| | |||||||||| || || | Sbjct: 651 tgcttcttatcctgatgtagccagtcaacttgccatcggcctgcttctcaacactgatat 592 Query: 408 tcaccaaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaaaccac 467 |||||| ||| || || |||||||| ||||| ||||| |||||||| |||||||| |||| Sbjct: 591 tcaccagagcgtcctcgccaaacacactcttggcatagagatttgcagcaaggaacccac 532 Query: 468 attcgccatcaagcgcggacggtggtgttagacacttcatgtttgttgacttgataacat 527 |||| ||||| ||||| || |||||||||||||||||||||||||| ||||| |||| || Sbjct: 531 attctccatcgagcgcagatggtggtgttagacacttcatgtttgtggacttaataatat 472 Query: 528 gattcaagaattccttctcatcttgaattactgtattaactgcaaccttgntttcccact 587 |||||||||||||||||||||| || || || ||||| || || ||||| ||||||||| Sbjct: 471 gattcaagaattccttctcatcctggatcacagtattcaccgccaccttattttcccact 412 Query: 588 caaattctgcccacatgttccggaaagtaacatctgcncatgtancangtganatataat 647 ||||||||||||||||||||||||| | |||||| || |||||| || |||| || |||| Sbjct: 411 caaattctgcccacatgttccggaatgcaacatcagcacatgtagcaggtgagatgtaat 352 Query: 648 ccatgatgtnaatgngaatatcattta 674 |||| || | |||| |||| ||||||| Sbjct: 351 ccataatatcaatgtgaatgtcattta 325
>dbj|AK120719.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002G07, full insert sequence Length = 3332 Score = 323 bits (163), Expect = 4e-85 Identities = 330/388 (85%) Strand = Plus / Minus Query: 287 ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 346 |||||||||||||| |||||||| |||||||| || |||||||| || |||||||||||| Sbjct: 2968 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 2909 Query: 347 ttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgctaatg 406 || |||| ||||||||| || || || ||||||||||| ||||||| |||| ||| ||| Sbjct: 2908 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaacgctgatg 2849 Query: 407 ttcaccaaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaaacca 466 |||||||| ||||| || ||||| || ||||| ||||| ||||| || || | || ||| Sbjct: 2848 ttcaccaatgcatcctcaccaaaaacactcttggcatagagattagcagcgataaaccca 2789 Query: 467 cattcgccatcaagcgcggacggtggtgttagacacttcatgtttgttgacttgataaca 526 ||||| ||||||||||| || |||||||||||||||||||| ||||| || ||||| | | Sbjct: 2788 cattctccatcaagcgcagatggtggtgttagacacttcatatttgtcgatttgatgata 2729 Query: 527 tgattcaagaattccttctcatcttgaattactgtattaactgcaaccttgntttcccac 586 |||| ||| |||||||||||||| ||||| || || || || || |||||| |||||||| Sbjct: 2728 tgatccaaaaattccttctcatcctgaatgacagtgttcacagccaccttgttttcccac 2669 Query: 587 tcaaattctgcccacatgttccggaaagtaacatctgcncatgtancangtganatataa 646 |||||||||||||||||||||||||||| |||||| || || ||| || |||| |||||| Sbjct: 2668 tcaaattctgcccacatgttccggaaagcaacatcggcacaagtagcaggtgagatataa 2609 Query: 647 tccatgatgtnaatgngaatatcattta 674 |||||||||| |||| ||||||| |||| Sbjct: 2608 tccatgatgtcaatgtgaatatcgttta 2581
>dbj|AK120713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002A09, full insert sequence Length = 3332 Score = 323 bits (163), Expect = 4e-85 Identities = 330/388 (85%) Strand = Plus / Minus Query: 287 ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 346 |||||||||||||| |||||||| |||||||| || |||||||| || |||||||||||| Sbjct: 2968 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 2909 Query: 347 ttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgctaatg 406 || |||| ||||||||| || || || ||||||||||| ||||||| |||| ||| ||| Sbjct: 2908 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaacgctgatg 2849 Query: 407 ttcaccaaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaaacca 466 |||||||| ||||| || ||||| || ||||| ||||| ||||| || || | || ||| Sbjct: 2848 ttcaccaatgcatcctcaccaaaaacactcttggcatagagattagcagcgataaaccca 2789 Query: 467 cattcgccatcaagcgcggacggtggtgttagacacttcatgtttgttgacttgataaca 526 ||||| ||||||||||| || |||||||||||||||||||| ||||| || ||||| | | Sbjct: 2788 cattctccatcaagcgcagatggtggtgttagacacttcatatttgtcgatttgatgata 2729 Query: 527 tgattcaagaattccttctcatcttgaattactgtattaactgcaaccttgntttcccac 586 |||| ||| |||||||||||||| ||||| || || || || || |||||| |||||||| Sbjct: 2728 tgatccaaaaattccttctcatcctgaatgacagtgttcacagccaccttgttttcccac 2669 Query: 587 tcaaattctgcccacatgttccggaaagtaacatctgcncatgtancangtganatataa 646 |||||||||||||||||||||||||||| |||||| || || ||| || |||| |||||| Sbjct: 2668 tcaaattctgcccacatgttccggaaagcaacatcggcacaagtagcaggtgagatataa 2609 Query: 647 tccatgatgtnaatgngaatatcattta 674 |||||||||| |||| ||||||| |||| Sbjct: 2608 tccatgatgtcaatgtgaatatcgttta 2581
>dbj|AK069716.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030F21, full insert sequence Length = 3363 Score = 323 bits (163), Expect = 4e-85 Identities = 330/388 (85%) Strand = Plus / Minus Query: 287 ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 346 |||||||||||||| |||||||| |||||||| || |||||||| || |||||||||||| Sbjct: 2999 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 2940 Query: 347 ttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgctaatg 406 || |||| ||||||||| || || || ||||||||||| ||||||| |||| ||| ||| Sbjct: 2939 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaacgctgatg 2880 Query: 407 ttcaccaaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaaacca 466 |||||||| ||||| || ||||| || ||||| ||||| ||||| || || | || ||| Sbjct: 2879 ttcaccaatgcatcctcaccaaaaacactcttggcatagagattagcagcgataaaccca 2820 Query: 467 cattcgccatcaagcgcggacggtggtgttagacacttcatgtttgttgacttgataaca 526 ||||| ||||||||||| || |||||||||||||||||||| ||||| || ||||| | | Sbjct: 2819 cattctccatcaagcgcagatggtggtgttagacacttcatatttgtcgatttgatgata 2760 Query: 527 tgattcaagaattccttctcatcttgaattactgtattaactgcaaccttgntttcccac 586 |||| ||| |||||||||||||| ||||| || || || || || |||||| |||||||| Sbjct: 2759 tgatccaaaaattccttctcatcctgaatgacagtgttcacagccaccttgttttcccac 2700 Query: 587 tcaaattctgcccacatgttccggaaagtaacatctgcncatgtancangtganatataa 646 |||||||||||||||||||||||||||| |||||| || || ||| || |||| |||||| Sbjct: 2699 tcaaattctgcccacatgttccggaaagcaacatcggcacaagtagcaggtgagatataa 2640 Query: 647 tccatgatgtnaatgngaatatcattta 674 |||||||||| |||| ||||||| |||| Sbjct: 2639 tccatgatgtcaatgtgaatatcgttta 2612
>dbj|AK061958.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-F11, full insert sequence Length = 1741 Score = 323 bits (163), Expect = 4e-85 Identities = 330/388 (85%) Strand = Plus / Minus Query: 287 ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 346 |||||||||||||| |||||||| |||||||| || |||||||| || |||||||||||| Sbjct: 1377 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 1318 Query: 347 ttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgctaatg 406 || |||| ||||||||| || || || ||||||||||| ||||||| |||| ||| ||| Sbjct: 1317 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaacgctgatg 1258 Query: 407 ttcaccaaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaaacca 466 |||||||| ||||| || ||||| || ||||| ||||| ||||| || || | || ||| Sbjct: 1257 ttcaccaatgcatcctcaccaaaaacactcttggcatagagattagcagcgataaaccca 1198 Query: 467 cattcgccatcaagcgcggacggtggtgttagacacttcatgtttgttgacttgataaca 526 ||||| ||||||||||| || |||||||||||||||||||| ||||| || ||||| | | Sbjct: 1197 cattctccatcaagcgcagatggtggtgttagacacttcatatttgtcgatttgatgata 1138 Query: 527 tgattcaagaattccttctcatcttgaattactgtattaactgcaaccttgntttcccac 586 |||| ||| |||||||||||||| ||||| || || || || || |||||| |||||||| Sbjct: 1137 tgatccaaaaattccttctcatcctgaatgacagtgttcacagccaccttgttttcccac 1078 Query: 587 tcaaattctgcccacatgttccggaaagtaacatctgcncatgtancangtganatataa 646 |||||||||||||||||||||||||||| |||||| || || ||| || |||| |||||| Sbjct: 1077 tcaaattctgcccacatgttccggaaagcaacatcggcacaagtagcaggtgagatataa 1018 Query: 647 tccatgatgtnaatgngaatatcattta 674 |||||||||| |||| ||||||| |||| Sbjct: 1017 tccatgatgtcaatgtgaatatcgttta 990
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 232 bits (117), Expect = 1e-57 Identities = 180/201 (89%) Strand = Plus / Plus Query: 283 ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 342 ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || Sbjct: 10020837 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 10020896 Query: 343 ggtcttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgct 402 ||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| Sbjct: 10020897 ggtcttgctccttattctgatgtaaccactgagcttgccatcaaactgcttctcgatgct 10020956 Query: 403 aatgttcaccaaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaa 462 || || |||||||||||||| || || || |||||||||||||| || ||||| || || Sbjct: 10020957 gatatttaccaaagcatcttcaccgaaaacactctttgcataaaggttagcggcgagaaa 10021016 Query: 463 accacattcgccatcaagcgc 483 ||| ||||| || |||||||| Sbjct: 10021017 accgcattctccgtcaagcgc 10021037 Score = 123 bits (62), Expect = 8e-25 Identities = 91/103 (88%) Strand = Plus / Plus Query: 572 accttgntttcccactcaaattctgcccacatgttccggaaagtaacatctgcncatgta 631 |||||| |||||||||||||||||||||||||||| |||||||||||||| || || || Sbjct: 10022550 accttgttttcccactcaaattctgcccacatgttacggaaagtaacatcagcgcaagtt 10022609 Query: 632 ncangtganatataatccatgatgtnaatgngaatatcattta 674 | |||| |||||||||||||||| |||| |||||||||||| Sbjct: 10022610 gctggtgagatataatccatgatgtcaatgtgaatatcattta 10022652 Score = 91.7 bits (46), Expect = 3e-15 Identities = 79/90 (87%) Strand = Plus / Plus Query: 486 acggtggtgttagacacttcatgtttgttgacttgataacatgattcaagaattccttct 545 ||||||||||||||||||||||||||||||||||||| | ||||| ||| || ||||||| Sbjct: 10021744 acggtggtgttagacacttcatgtttgttgacttgatgatatgatccaaaaactccttct 10021803 Query: 546 catcttgaattactgtattaactgcaacct 575 ||| ||||| || ||||| ||||| |||| Sbjct: 10021804 cattctgaatgacagtattcactgccacct 10021833
>dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1085F09 Length = 132713 Score = 232 bits (117), Expect = 1e-57 Identities = 180/201 (89%) Strand = Plus / Plus Query: 283 ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 342 ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || Sbjct: 101119 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 101178 Query: 343 ggtcttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgct 402 ||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| Sbjct: 101179 ggtcttgctccttattctgatgtaaccactgagcttgccatcaaactgcttctcgatgct 101238 Query: 403 aatgttcaccaaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaa 462 || || |||||||||||||| || || || |||||||||||||| || ||||| || || Sbjct: 101239 gatatttaccaaagcatcttcaccgaaaacactctttgcataaaggttagcggcgagaaa 101298 Query: 463 accacattcgccatcaagcgc 483 ||| ||||| || |||||||| Sbjct: 101299 accgcattctccgtcaagcgc 101319 Score = 123 bits (62), Expect = 8e-25 Identities = 91/103 (88%) Strand = Plus / Plus Query: 572 accttgntttcccactcaaattctgcccacatgttccggaaagtaacatctgcncatgta 631 |||||| |||||||||||||||||||||||||||| |||||||||||||| || || || Sbjct: 102832 accttgttttcccactcaaattctgcccacatgttacggaaagtaacatcagcgcaagtt 102891 Query: 632 ncangtganatataatccatgatgtnaatgngaatatcattta 674 | |||| |||||||||||||||| |||| |||||||||||| Sbjct: 102892 gctggtgagatataatccatgatgtcaatgtgaatatcattta 102934 Score = 91.7 bits (46), Expect = 3e-15 Identities = 79/90 (87%) Strand = Plus / Plus Query: 486 acggtggtgttagacacttcatgtttgttgacttgataacatgattcaagaattccttct 545 ||||||||||||||||||||||||||||||||||||| | ||||| ||| || ||||||| Sbjct: 102026 acggtggtgttagacacttcatgtttgttgacttgatgatatgatccaaaaactccttct 102085 Query: 546 catcttgaattactgtattaactgcaacct 575 ||| ||||| || ||||| ||||| |||| Sbjct: 102086 cattctgaatgacagtattcactgccacct 102115
>dbj|AP002804.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0021A04 Length = 50487 Score = 232 bits (117), Expect = 1e-57 Identities = 180/201 (89%) Strand = Plus / Plus Query: 283 ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 342 ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || Sbjct: 48394 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 48453 Query: 343 ggtcttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgct 402 ||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| Sbjct: 48454 ggtcttgctccttattctgatgtaaccactgagcttgccatcaaactgcttctcgatgct 48513 Query: 403 aatgttcaccaaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaa 462 || || |||||||||||||| || || || |||||||||||||| || ||||| || || Sbjct: 48514 gatatttaccaaagcatcttcaccgaaaacactctttgcataaaggttagcggcgagaaa 48573 Query: 463 accacattcgccatcaagcgc 483 ||| ||||| || |||||||| Sbjct: 48574 accgcattctccgtcaagcgc 48594 Score = 123 bits (62), Expect = 8e-25 Identities = 91/103 (88%) Strand = Plus / Plus Query: 572 accttgntttcccactcaaattctgcccacatgttccggaaagtaacatctgcncatgta 631 |||||| |||||||||||||||||||||||||||| |||||||||||||| || || || Sbjct: 50107 accttgttttcccactcaaattctgcccacatgttacggaaagtaacatcagcgcaagtt 50166 Query: 632 ncangtganatataatccatgatgtnaatgngaatatcattta 674 | |||| |||||||||||||||| |||| |||||||||||| Sbjct: 50167 gctggtgagatataatccatgatgtcaatgtgaatatcattta 50209 Score = 91.7 bits (46), Expect = 3e-15 Identities = 79/90 (87%) Strand = Plus / Plus Query: 486 acggtggtgttagacacttcatgtttgttgacttgataacatgattcaagaattccttct 545 ||||||||||||||||||||||||||||||||||||| | ||||| ||| || ||||||| Sbjct: 49301 acggtggtgttagacacttcatgtttgttgacttgatgatatgatccaaaaactccttct 49360 Query: 546 catcttgaattactgtattaactgcaacct 575 ||| ||||| || ||||| ||||| |||| Sbjct: 49361 cattctgaatgacagtattcactgccacct 49390
>dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0036E02 Length = 145931 Score = 232 bits (117), Expect = 1e-57 Identities = 180/201 (89%) Strand = Plus / Plus Query: 283 ttaactgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttg 342 ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || Sbjct: 115330 ttaactgcctcccttctgcttgagggtaatcttgtctcctaagctgagtgcgattccctg 115389 Query: 343 ggtcttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgct 402 ||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||| Sbjct: 115390 ggtcttgctccttattctgatgtaaccactgagcttgccatcaaactgcttctcgatgct 115449 Query: 403 aatgttcaccaaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaa 462 || || |||||||||||||| || || || |||||||||||||| || ||||| || || Sbjct: 115450 gatatttaccaaagcatcttcaccgaaaacactctttgcataaaggttagcggcgagaaa 115509 Query: 463 accacattcgccatcaagcgc 483 ||| ||||| || |||||||| Sbjct: 115510 accgcattctccgtcaagcgc 115530 Score = 123 bits (62), Expect = 8e-25 Identities = 91/103 (88%) Strand = Plus / Plus Query: 572 accttgntttcccactcaaattctgcccacatgttccggaaagtaacatctgcncatgta 631 |||||| |||||||||||||||||||||||||||| |||||||||||||| || || || Sbjct: 117043 accttgttttcccactcaaattctgcccacatgttacggaaagtaacatcagcgcaagtt 117102 Query: 632 ncangtganatataatccatgatgtnaatgngaatatcattta 674 | |||| |||||||||||||||| |||| |||||||||||| Sbjct: 117103 gctggtgagatataatccatgatgtcaatgtgaatatcattta 117145 Score = 91.7 bits (46), Expect = 3e-15 Identities = 79/90 (87%) Strand = Plus / Plus Query: 486 acggtggtgttagacacttcatgtttgttgacttgataacatgattcaagaattccttct 545 ||||||||||||||||||||||||||||||||||||| | ||||| ||| || ||||||| Sbjct: 116237 acggtggtgttagacacttcatgtttgttgacttgatgatatgatccaaaaactccttct 116296 Query: 546 catcttgaattactgtattaactgcaacct 575 ||| ||||| || ||||| ||||| |||| Sbjct: 116297 cattctgaatgacagtattcactgccacct 116326
>gb|AC120539.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0063D09 map S1559, complete sequence Length = 190721 Score = 145 bits (73), Expect = 2e-31 Identities = 166/197 (84%) Strand = Plus / Plus Query: 287 ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 346 |||||||||||||| |||||||| |||||||| || |||||||| || |||||||||||| Sbjct: 16550 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 16609 Query: 347 ttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgctaatg 406 || |||| ||||||||| || || || ||||||||||| ||||||| |||| ||| ||| Sbjct: 16610 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaacgctgatg 16669 Query: 407 ttcaccaaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaaacca 466 |||||||| ||||| || ||||| || ||||| ||||| ||||| || || | || ||| Sbjct: 16670 ttcaccaatgcatcctcaccaaaaacactcttggcatagagattagcagcgataaaccca 16729 Query: 467 cattcgccatcaagcgc 483 ||||| ||||||||||| Sbjct: 16730 cattctccatcaagcgc 16746 Score = 131 bits (66), Expect = 3e-27 Identities = 92/103 (89%) Strand = Plus / Plus Query: 572 accttgntttcccactcaaattctgcccacatgttccggaaagtaacatctgcncatgta 631 |||||| |||||||||||||||||||||||||||||||||||| |||||| || || ||| Sbjct: 17976 accttgttttcccactcaaattctgcccacatgttccggaaagcaacatcggcacaagta 18035 Query: 632 ncangtganatataatccatgatgtnaatgngaatatcattta 674 || |||| |||||||||||||||| |||| ||||||| |||| Sbjct: 18036 gcaggtgagatataatccatgatgtcaatgtgaatatcgttta 18078 Score = 75.8 bits (38), Expect = 2e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 486 acggtggtgttagacacttcatgtttgttgacttgataacatgattcaagaattccttct 545 |||||||||||||||||||||| ||||| || ||||| | ||||| ||| |||||||||| Sbjct: 17511 acggtggtgttagacacttcatatttgtcgatttgatgatatgatccaaaaattccttct 17570 Query: 546 catcttgaat 555 |||| ||||| Sbjct: 17571 catcctgaat 17580
>gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0055G24 map S20116S, complete sequence Length = 174210 Score = 145 bits (73), Expect = 2e-31 Identities = 166/197 (84%) Strand = Plus / Plus Query: 287 ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 346 |||||||||||||| |||||||| |||||||| || |||||||| || |||||||||||| Sbjct: 166015 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 166074 Query: 347 ttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgctaatg 406 || |||| ||||||||| || || || ||||||||||| ||||||| |||| ||| ||| Sbjct: 166075 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaacgctgatg 166134 Query: 407 ttcaccaaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaaacca 466 |||||||| ||||| || ||||| || ||||| ||||| ||||| || || | || ||| Sbjct: 166135 ttcaccaatgcatcctcaccaaaaacactcttggcatagagattagcagcgataaaccca 166194 Query: 467 cattcgccatcaagcgc 483 ||||| ||||||||||| Sbjct: 166195 cattctccatcaagcgc 166211 Score = 131 bits (66), Expect = 3e-27 Identities = 92/103 (89%) Strand = Plus / Plus Query: 572 accttgntttcccactcaaattctgcccacatgttccggaaagtaacatctgcncatgta 631 |||||| |||||||||||||||||||||||||||||||||||| |||||| || || ||| Sbjct: 167441 accttgttttcccactcaaattctgcccacatgttccggaaagcaacatcggcacaagta 167500 Query: 632 ncangtganatataatccatgatgtnaatgngaatatcattta 674 || |||| |||||||||||||||| |||| ||||||| |||| Sbjct: 167501 gcaggtgagatataatccatgatgtcaatgtgaatatcgttta 167543 Score = 75.8 bits (38), Expect = 2e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 486 acggtggtgttagacacttcatgtttgttgacttgataacatgattcaagaattccttct 545 |||||||||||||||||||||| ||||| || ||||| | ||||| ||| |||||||||| Sbjct: 166976 acggtggtgttagacacttcatatttgtcgatttgatgatatgatccaaaaattccttct 167035 Query: 546 catcttgaat 555 |||| ||||| Sbjct: 167036 catcctgaat 167045
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 145 bits (73), Expect = 2e-31 Identities = 166/197 (84%) Strand = Plus / Plus Query: 287 ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 346 |||||||||||||| |||||||| |||||||| || |||||||| || |||||||||||| Sbjct: 3648878 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 3648937 Query: 347 ttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgctaatg 406 || |||| ||||||||| || || || ||||||||||| ||||||| |||| ||| ||| Sbjct: 3648938 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaacgctgatg 3648997 Query: 407 ttcaccaaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaaacca 466 |||||||| ||||| || ||||| || ||||| ||||| ||||| || || | || ||| Sbjct: 3648998 ttcaccaatgcatcctcaccaaaaacactcttggcatagagattagcagcgataaaccca 3649057 Query: 467 cattcgccatcaagcgc 483 ||||| ||||||||||| Sbjct: 3649058 cattctccatcaagcgc 3649074 Score = 131 bits (66), Expect = 3e-27 Identities = 92/103 (89%) Strand = Plus / Plus Query: 572 accttgntttcccactcaaattctgcccacatgttccggaaagtaacatctgcncatgta 631 |||||| |||||||||||||||||||||||||||||||||||| |||||| || || ||| Sbjct: 3650304 accttgttttcccactcaaattctgcccacatgttccggaaagcaacatcggcacaagta 3650363 Query: 632 ncangtganatataatccatgatgtnaatgngaatatcattta 674 || |||| |||||||||||||||| |||| ||||||| |||| Sbjct: 3650364 gcaggtgagatataatccatgatgtcaatgtgaatatcgttta 3650406 Score = 75.8 bits (38), Expect = 2e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 486 acggtggtgttagacacttcatgtttgttgacttgataacatgattcaagaattccttct 545 |||||||||||||||||||||| ||||| || ||||| | ||||| ||| |||||||||| Sbjct: 3649839 acggtggtgttagacacttcatatttgtcgatttgatgatatgatccaaaaattccttct 3649898 Query: 546 catcttgaat 555 |||| ||||| Sbjct: 3649899 catcctgaat 3649908
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 145 bits (73), Expect = 2e-31 Identities = 166/197 (84%) Strand = Plus / Plus Query: 287 ctgcctcccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtc 346 |||||||||||||| |||||||| |||||||| || |||||||| || |||||||||||| Sbjct: 3657572 ctgcctcccttctgtttgagggtgatcttgtcgcctaagctgagggcgattccttgggtc 3657631 Query: 347 ttgctccttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgctaatg 406 || |||| ||||||||| || || || ||||||||||| ||||||| |||| ||| ||| Sbjct: 3657632 ttactccgtattctgatatagccactcagcttgccatcggcttgcttttcaacgctgatg 3657691 Query: 407 ttcaccaaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaaacca 466 |||||||| ||||| || ||||| || ||||| ||||| ||||| || || | || ||| Sbjct: 3657692 ttcaccaatgcatcctcaccaaaaacactcttggcatagagattagcagcgataaaccca 3657751 Query: 467 cattcgccatcaagcgc 483 ||||| ||||||||||| Sbjct: 3657752 cattctccatcaagcgc 3657768 Score = 131 bits (66), Expect = 3e-27 Identities = 92/103 (89%) Strand = Plus / Plus Query: 572 accttgntttcccactcaaattctgcccacatgttccggaaagtaacatctgcncatgta 631 |||||| |||||||||||||||||||||||||||||||||||| |||||| || || ||| Sbjct: 3658998 accttgttttcccactcaaattctgcccacatgttccggaaagcaacatcggcacaagta 3659057 Query: 632 ncangtganatataatccatgatgtnaatgngaatatcattta 674 || |||| |||||||||||||||| |||| ||||||| |||| Sbjct: 3659058 gcaggtgagatataatccatgatgtcaatgtgaatatcgttta 3659100 Score = 75.8 bits (38), Expect = 2e-10 Identities = 62/70 (88%) Strand = Plus / Plus Query: 486 acggtggtgttagacacttcatgtttgttgacttgataacatgattcaagaattccttct 545 |||||||||||||||||||||| ||||| || ||||| | ||||| ||| |||||||||| Sbjct: 3658533 acggtggtgttagacacttcatatttgtcgatttgatgatatgatccaaaaattccttct 3658592 Query: 546 catcttgaat 555 |||| ||||| Sbjct: 3658593 catcctgaat 3658602
>ref|NM_119298.2| Arabidopsis thaliana clathrin binding AT4G31490 mRNA, complete cds Length = 3306 Score = 61.9 bits (31), Expect = 3e-06 Identities = 142/179 (79%) Strand = Plus / Minus Query: 293 cccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtcttgctc 352 ||||| || |||||||| || |||||||| | || || ||||| ||||| ||||||||| Sbjct: 2955 cccttttgtttgagggtgattttgtctccaagacttagagcaatcccttgcgtcttgctc 2896 Query: 353 cttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgctaatgttcacc 412 ||||| || |||||||| || | | ||||| |||||||||||| || | ||||| Sbjct: 2895 cttatccttatgtaaccactcaatgttccatccgtttgcttctcaatactcaaattcaca 2836 Query: 413 aaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaaaccacattc 471 | |||||| || |||||||| || |||||||| | ||||| |||||||| |||||||| Sbjct: 2835 agagcatcctcaccaaacacactttttgcatataagtttgctgcaaggaatccacattc 2777 Score = 48.1 bits (24), Expect = 0.038 Identities = 32/35 (91%) Strand = Plus / Minus Query: 569 gcaaccttgntttcccactcaaattctgcccacat 603 ||||||||| ||||||| ||||| ||||||||||| Sbjct: 2679 gcaaccttgttttcccattcaaactctgcccacat 2645
>emb|AL080283.1|ATF3L17 Arabidopsis thaliana DNA chromosome 4, BAC clone F3L17 (ESSA project) Length = 94319 Score = 61.9 bits (31), Expect = 3e-06 Identities = 142/179 (79%) Strand = Plus / Minus Query: 293 cccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtcttgctc 352 ||||| || |||||||| || |||||||| | || || ||||| ||||| ||||||||| Sbjct: 50562 cccttttgtttgagggtgattttgtctccaagacttagagcaatcccttgcgtcttgctc 50503 Query: 353 cttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgctaatgttcacc 412 ||||| || |||||||| || | | ||||| |||||||||||| || | ||||| Sbjct: 50502 cttatccttatgtaaccactcaatgttccatccgtttgcttctcaatactcaaattcaca 50443 Query: 413 aaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaaaccacattc 471 | |||||| || |||||||| || |||||||| | ||||| |||||||| |||||||| Sbjct: 50442 agagcatcctcaccaaacacactttttgcatataagtttgctgcaaggaatccacattc 50384 Score = 44.1 bits (22), Expect = 0.59 Identities = 34/38 (89%) Strand = Plus / Minus Query: 332 gcaattccttgggtcttgctccttattctgatgtaacc 369 ||||| ||||| |||||||||||||| || |||||||| Sbjct: 45214 gcaatcccttgcgtcttgctccttatccttatgtaacc 45177 Score = 42.1 bits (21), Expect = 2.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 572 accttgntttcccactcaaattctgcccacat 603 |||||| ||||||| ||||| ||||||||||| Sbjct: 50114 accttgttttcccattcaaactctgcccacat 50083
>emb|AL161579.2|ATCHRIV75 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 75 Length = 196242 Score = 61.9 bits (31), Expect = 3e-06 Identities = 142/179 (79%) Strand = Plus / Minus Query: 293 cccttctgcttgagggtaatcttgtctcccaagctgagtgcaattccttgggtcttgctc 352 ||||| || |||||||| || |||||||| | || || ||||| ||||| ||||||||| Sbjct: 38627 cccttttgtttgagggtgattttgtctccaagacttagagcaatcccttgcgtcttgctc 38568 Query: 353 cttattctgatgtaaccgctgagcttgccatcaacttgcttctcaatgctaatgttcacc 412 ||||| || |||||||| || | | ||||| |||||||||||| || | ||||| Sbjct: 38567 cttatccttatgtaaccactcaatgttccatccgtttgcttctcaatactcaaattcaca 38508 Query: 413 aaagcatcttctccaaacacgctctttgcataaagatttgcggcaaggaaaccacattc 471 | |||||| || |||||||| || |||||||| | ||||| |||||||| |||||||| Sbjct: 38507 agagcatcctcaccaaacacactttttgcatataagtttgctgcaaggaatccacattc 38449 Score = 44.1 bits (22), Expect = 0.59 Identities = 34/38 (89%) Strand = Plus / Minus Query: 332 gcaattccttgggtcttgctccttattctgatgtaacc 369 ||||| ||||| |||||||||||||| || |||||||| Sbjct: 33279 gcaatcccttgcgtcttgctccttatccttatgtaacc 33242 Score = 42.1 bits (21), Expect = 2.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 572 accttgntttcccactcaaattctgcccacat 603 |||||| ||||||| ||||| ||||||||||| Sbjct: 38179 accttgttttcccattcaaactctgcccacat 38148
>emb|AJ720879.1| Gallus gallus mRNA for hypothetical protein, clone 28l17 Length = 3348 Score = 60.0 bits (30), Expect = 1e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 559 tgtattaactgcaaccttgntttcccactcaaattctgcccacat 603 |||||| |||| ||| ||| ||||||||||||||||||||||||| Sbjct: 2771 tgtattcactgtaactttgttttcccactcaaattctgcccacat 2727 Score = 40.1 bits (20), Expect = 9.2 Identities = 27/30 (90%) Strand = Plus / Minus Query: 641 atataatccatgatgtnaatgngaatatca 670 ||||||||||| |||| |||| |||||||| Sbjct: 2689 atataatccattatgtcaatgtgaatatca 2660
>ref|NM_001006467.1| Gallus gallus coatomer protein complex, subunit beta (COPB), mRNA Length = 3348 Score = 60.0 bits (30), Expect = 1e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 559 tgtattaactgcaaccttgntttcccactcaaattctgcccacat 603 |||||| |||| ||| ||| ||||||||||||||||||||||||| Sbjct: 2771 tgtattcactgtaactttgttttcccactcaaattctgcccacat 2727 Score = 40.1 bits (20), Expect = 9.2 Identities = 27/30 (90%) Strand = Plus / Minus Query: 641 atataatccatgatgtnaatgngaatatca 670 ||||||||||| |||| |||| |||||||| Sbjct: 2689 atataatccattatgtcaatgtgaatatca 2660
>ref|NM_119297.2| Arabidopsis thaliana clathrin binding AT4G31480 mRNA, complete cds Length = 3296 Score = 44.1 bits (22), Expect = 0.59 Identities = 34/38 (89%) Strand = Plus / Minus Query: 332 gcaattccttgggtcttgctccttattctgatgtaacc 369 ||||| ||||| |||||||||||||| || |||||||| Sbjct: 2867 gcaatcccttgcgtcttgctccttatccttatgtaacc 2830 Score = 42.1 bits (21), Expect = 2.3 Identities = 108/137 (78%) Strand = Plus / Minus Query: 388 ttgcttctcaatgctaatgttcaccaaagcatcttctccaaacacgctctttgcataaag 447 |||||||||||| || | ||||| | |||||| || ||||| || || ||||| || | Sbjct: 2811 ttgcttctcaatactcacattcacaagagcatcctcaccaaatacactttttgcgtataa 2752 Query: 448 atttgcggcaaggaaaccacattcgccatcaagcgcggacggtggtgttagacacttcat 507 ||||| |||||||| ||||||||||| || | ||||| || | || ||||| ||||| Sbjct: 2751 gtttgctgcaaggaatccacattcgccttctattgcggatggagcagtgagacatttcat 2692 Query: 508 gtttgttgacttgataa 524 |||||| || ||||||| Sbjct: 2691 gtttgtagatttgataa 2675 Score = 40.1 bits (20), Expect = 9.2 Identities = 31/35 (88%) Strand = Plus / Minus Query: 569 gcaaccttgntttcccactcaaattctgcccacat 603 ||||||||| ||||||| || || ||||||||||| Sbjct: 2630 gcaaccttgttttcccattcgaactctgcccacat 2596
>gb|AC142210.1| Solanum demissum chromosome 11 BAC PGEC589 genomic sequence, complete sequence Length = 91755 Score = 44.1 bits (22), Expect = 0.59 Identities = 25/26 (96%) Strand = Plus / Minus Query: 248 ctacatgacacaattgcaacagattg 273 |||||||| ||||||||||||||||| Sbjct: 20673 ctacatgagacaattgcaacagattg 20648
>ref|XM_788019.1| PREDICTED: Strongylocentrotus purpuratus similar to Coatomer beta subunit (Beta-coat protein) (Beta-COP) (LOC588329), mRNA Length = 1149 Score = 44.1 bits (22), Expect = 0.59 Identities = 30/33 (90%) Strand = Plus / Minus Query: 572 accttgntttcccactcaaattctgcccacatg 604 |||||| ||||||||||||| || ||||||||| Sbjct: 782 accttgttttcccactcaaactcagcccacatg 750
>dbj|AK221668.1| Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL09-97-P16 Length = 1212 Score = 44.1 bits (22), Expect = 0.59 Identities = 34/38 (89%) Strand = Plus / Minus Query: 332 gcaattccttgggtcttgctccttattctgatgtaacc 369 ||||| ||||| |||||||||||||| || |||||||| Sbjct: 822 gcaatcccttgcgtcttgctccttatccttatgtaacc 785 Score = 42.1 bits (21), Expect = 2.3 Identities = 108/137 (78%) Strand = Plus / Minus Query: 388 ttgcttctcaatgctaatgttcaccaaagcatcttctccaaacacgctctttgcataaag 447 |||||||||||| || | ||||| | |||||| || ||||| || || ||||| || | Sbjct: 766 ttgcttctcaatactcacattcacaagagcatcctcaccaaatacactttttgcgtataa 707 Query: 448 atttgcggcaaggaaaccacattcgccatcaagcgcggacggtggtgttagacacttcat 507 ||||| |||||||| ||||||||||| || | ||||| || | || ||||| ||||| Sbjct: 706 gtttgctgcaaggaatccacattcgccttctattgcggatggagcagtgagacatttcat 647 Query: 508 gtttgttgacttgataa 524 |||||| || ||||||| Sbjct: 646 gtttgtagatttgataa 630 Score = 40.1 bits (20), Expect = 9.2 Identities = 31/35 (88%) Strand = Plus / Minus Query: 569 gcaaccttgntttcccactcaaattctgcccacat 603 ||||||||| ||||||| || || ||||||||||| Sbjct: 585 gcaaccttgttttcccattcgaactctgcccacat 551
>gb|AF238380.3| Homo sapiens chromosome X multiple clones map p11.23, complete sequence Length = 158698 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 acattatattttcatctttac 204 ||||||||||||||||||||| Sbjct: 125241 acattatattttcatctttac 125221
>gb|AE006367.1| Lactococcus lactis subsp. lactis IL1403 section 129 of 218 of the complete genome Length = 11901 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 36 gttttttgtcaaaaaaggcct 56 ||||||||||||||||||||| Sbjct: 4932 gttttttgtcaaaaaaggcct 4912
>gb|AC134508.2| Homo sapiens 3 BAC RP11-447M4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 51315 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 tcttctcatccctctctttaa 175 ||||||||||||||||||||| Sbjct: 29023 tcttctcatccctctctttaa 29043
>gb|CP000302.1| Shewanella denitrificans OS217, complete genome Length = 4545906 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 185 cattatattttcatctttact 205 ||||||||||||||||||||| Sbjct: 3184138 cattatattttcatctttact 3184118
>gb|AC112219.2| Homo sapiens chromosome 3 clone RP11-433A10, complete sequence Length = 155472 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 496 tagacacttcatgtttgttga 516 ||||||||||||||||||||| Sbjct: 48287 tagacacttcatgtttgttga 48307
>gb|AC090092.9| Homo sapiens chromosome 11, clone RP11-266A24, complete sequence Length = 101116 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 149 tcttcctcttctcatccctct 169 ||||||||||||||||||||| Sbjct: 82774 tcttcctcttctcatccctct 82794
>gb|AC099567.2| Homo sapiens chromosome 1 clone RP5-936J12, complete sequence Length = 171400 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 178 ttttgtacattatattttcat 198 ||||||||||||||||||||| Sbjct: 150130 ttttgtacattatattttcat 150150
>gb|AC148584.23| Gasterosteus aculeatus clone ch213-278g3, complete sequence Length = 169579 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 153 cctcttctcatccctctcttt 173 ||||||||||||||||||||| Sbjct: 41686 cctcttctcatccctctcttt 41706
>gb|AC107925.5| Homo sapiens chromosome 11, clone RP11-379A20, complete sequence Length = 170801 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 149 tcttcctcttctcatccctct 169 ||||||||||||||||||||| Sbjct: 7996 tcttcctcttctcatccctct 8016
>gb|AC097501.3| Homo sapiens BAC clone RP11-340A13 from 4, complete sequence Length = 173099 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 175 atcttttgtacattatatttt 195 ||||||||||||||||||||| Sbjct: 108392 atcttttgtacattatatttt 108412
>gb|AF222686.1|AF222686 Homo sapiens chromosome X PAC K6166 map Xp11.23, complete sequence Length = 122181 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 184 acattatattttcatctttac 204 ||||||||||||||||||||| Sbjct: 5002 acattatattttcatctttac 4982
>gb|AC100541.17| Mus musculus chromosome 8, clone RP23-152F18, complete sequence Length = 204424 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 252 atgacacaattgcaacagatt 272 ||||||||||||||||||||| Sbjct: 73824 atgacacaattgcaacagatt 73844
>gb|AF039048.2| Caenorhabditis elegans cosmid F16B4, complete sequence Length = 43814 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 atggcaagggagttgggaga 80 |||||||||||||||||||| Sbjct: 20297 atggcaagggagttgggaga 20316
>gb|AC005483.1| Homo sapiens PAC clone RP4-806A17 from 7, complete sequence Length = 161667 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 ttttgtacattatattttca 197 |||||||||||||||||||| Sbjct: 98691 ttttgtacattatattttca 98710
>gb|AC124764.3| Mus musculus BAC clone RP23-166K1 from chromosome 18, complete sequence Length = 209579 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 tcttcctcttctcatccctc 168 |||||||||||||||||||| Sbjct: 64584 tcttcctcttctcatccctc 64565
>ref|XM_754415.1| Ustilago maydis 521 hypothetical protein (UM03361.1) partial mRNA Length = 2949 Score = 40.1 bits (20), Expect = 9.2 Identities = 38/44 (86%) Strand = Plus / Minus Query: 308 gtaatcttgtctcccaagctgagtgcaattccttgggtcttgct 351 |||||||||||||||||||| | || || || ||||||||||| Sbjct: 2918 gtaatcttgtctcccaagctcaaggcgatcccctgggtcttgct 2875
>ref|XM_854550.1| PREDICTED: Canis familiaris similar to senataxin, transcript variant 2 (LOC480691), mRNA Length = 8571 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 602 atgttccggaaagtaacatc 621 |||||||||||||||||||| Sbjct: 7073 atgttccggaaagtaacatc 7054
>ref|XM_537811.2| PREDICTED: Canis familiaris similar to senataxin, transcript variant 1 (LOC480691), mRNA Length = 8670 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 602 atgttccggaaagtaacatc 621 |||||||||||||||||||| Sbjct: 7073 atgttccggaaagtaacatc 7054
>gb|AC122300.3| Mus musculus BAC clone RP23-275E20 from 7, complete sequence Length = 182032 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 178 ttttgtacattatattttcatctt 201 |||||||||||||||||| ||||| Sbjct: 100537 ttttgtacattatattttgatctt 100514
>ref|XM_736990.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000157.00.0) partial mRNA Length = 1536 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 ttatattttcatctttacta 206 |||||||||||||||||||| Sbjct: 397 ttatattttcatctttacta 378
>ref|XM_726820.1| Plasmodium chabaudi chabaudi hypothetical protein (PC403684.00.0) partial mRNA Length = 274 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 187 ttatattttcatctttacta 206 |||||||||||||||||||| Sbjct: 109 ttatattttcatctttacta 90
>emb|AL356414.11| Human DNA sequence from clone RP11-352D3 on chromosome 20 Contains the RPL21P2 gene for ribosomal protein L21 pseudogene 2 and a novel gene, complete sequence Length = 72540 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 tgtctcccaagctgagtgca 334 |||||||||||||||||||| Sbjct: 6689 tgtctcccaagctgagtgca 6670
>emb|AL354831.18| Human DNA sequence from clone RP11-188A23 on chromosome 13 Contains a novel gene and a CpG island, complete sequence Length = 144586 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 454 ggcaaggaaaccacattcgc 473 |||||||||||||||||||| Sbjct: 60540 ggcaaggaaaccacattcgc 60521
>gb|AC027118.9| Homo sapiens chromosome 10 clone RP11-573I11, complete sequence Length = 170255 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 376 cttgccatcaacttgcttct 395 |||||||||||||||||||| Sbjct: 75604 cttgccatcaacttgcttct 75623
>gb|AC016194.7| Homo sapiens chromosome 8, clone RP11-24F20, complete sequence Length = 146768 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 tacattatattttcatcttt 202 |||||||||||||||||||| Sbjct: 57379 tacattatattttcatcttt 57398
>gb|AC068207.6| Homo sapiens chromosome 8, clone RP11-26K8, complete sequence Length = 168843 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cccttctgcttgagggtaat 312 |||||||||||||||||||| Sbjct: 29210 cccttctgcttgagggtaat 29229
>ref|XM_697090.1| PREDICTED: Danio rerio hypothetical protein LOC554904 (LOC554904), mRNA Length = 5959 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 caaggaaaccacattcgcca 475 |||||||||||||||||||| Sbjct: 4973 caaggaaaccacattcgcca 4992
>ref|NM_071051.2| Caenorhabditis elegans F16B4.3 (F16B4.3) mRNA, complete cds Length = 2067 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 atggcaagggagttgggaga 80 |||||||||||||||||||| Sbjct: 1444 atggcaagggagttgggaga 1463
>gb|AC106892.3| Homo sapiens BAC clone RP11-55L3 from 4, complete sequence Length = 164051 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 tcttcctcttctcatccctc 168 |||||||||||||||||||| Sbjct: 129969 tcttcctcttctcatccctc 129950
>gb|AF381386.1| Monolopia congdonii chloroplast rpl20 gene, and rpl20-rps12 spacer, partial sequence Length = 654 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 534 agaattccttctcatcttgaatta 557 |||||| ||||||||||||||||| Sbjct: 559 agaattgcttctcatcttgaatta 582
>gb|AC006030.2| Homo sapiens BAC clone RP11-1P9 from 2, complete sequence Length = 89352 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 ctcccttctgcttgagggta 310 |||||||||||||||||||| Sbjct: 72452 ctcccttctgcttgagggta 72433
>emb|BX293564.5| Zebrafish DNA sequence from clone DKEYP-7F8 in linkage group 20, complete sequence Length = 145495 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 caaggaaaccacattcgcca 475 |||||||||||||||||||| Sbjct: 98092 caaggaaaccacattcgcca 98073
>dbj|AP006305.1| Homo sapiens genomic DNA, chromosome 8 clone:RP11-53M8, complete sequence Length = 185588 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cccttctgcttgagggtaat 312 |||||||||||||||||||| Sbjct: 134566 cccttctgcttgagggtaat 134585
>dbj|AP003397.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-1007G5, complete sequences Length = 184643 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 546 catcttgaattactgtatta 565 |||||||||||||||||||| Sbjct: 46451 catcttgaattactgtatta 46432
>dbj|AP006212.1| Homo sapiens genomic DNA, chromosome 20, clone:CTB-271B20, complete sequence Length = 129610 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 tgtctcccaagctgagtgca 334 |||||||||||||||||||| Sbjct: 44905 tgtctcccaagctgagtgca 44886
>dbj|AP000072.1| Homo sapiens genomic DNA, chromosome 8p11.2, senescence gene region, section 8/19, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 cccttctgcttgagggtaat 312 |||||||||||||||||||| Sbjct: 911 cccttctgcttgagggtaat 892
>emb|AL732560.11| Mouse DNA sequence from clone RP24-209P15 on chromosome 2, complete sequence Length = 104663 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 509 tttgttgacttgataacatg 528 |||||||||||||||||||| Sbjct: 74561 tttgttgacttgataacatg 74580 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,900,530 Number of Sequences: 3902068 Number of extensions: 5900530 Number of successful extensions: 132715 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 132429 Number of HSP's gapped (non-prelim): 284 length of query: 674 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 651 effective length of database: 17,143,297,704 effective search space: 11160286805304 effective search space used: 11160286805304 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)