ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags12d01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UN13B_RAT (Q62769) Unc-13 homolog B (Munc13-2) 29 6.4
2Y1034_THEMA (Q9X0C4) Putative UDP-N-acetylglucosamine 2-epimeras... 29 8.3

>UN13B_RAT (Q62769) Unc-13 homolog B (Munc13-2)|
          Length = 1622

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = -1

Query: 373 HFLRSVQSS---W--SRRGLMSWQVFFDRLAKELCHLERRRYG 260
           H+L  +Q S   W    RG  +W+V+FD  A+E+      RYG
Sbjct: 765 HYLTDIQGSGGVWIPDARGDDAWKVYFDETAQEIVDEFAMRYG 807



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>Y1034_THEMA (Q9X0C4) Putative UDP-N-acetylglucosamine 2-epimerase (EC 5.1.3.14)|
           (UDP-GlcNAc-2-epimerase)
          Length = 378

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -3

Query: 377 ESLLEICAKLL-EQERLDELAGVLRPFGEGAVSSR 276
           E + E+  KLL ++E  +++A  + PFG+G  S R
Sbjct: 325 ERIFELAKKLLVDREEYEKMAKAVNPFGDGRASER 359


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,954,362
Number of Sequences: 219361
Number of extensions: 968500
Number of successful extensions: 2391
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2391
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3696665728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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