ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags11n24 |
|---|---|
| Clone Library Name | barley_pub |
>Y4105_ARATH (Q9M158) Putative protein At4g01050| Length = 466 Score = 34.7 bits (78), Expect = 0.061 Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 3/40 (7%) Frame = -3 Query: 210 LPXVE--VNSAPVAEAVE-ESLPPAKPRPLSPYANYPDLK 100 +P +E V + + E E E+ P RPLSPYA+YPDLK Sbjct: 417 VPAIEAAVAAQVITEPTETEAKPKPHSRPLSPYASYPDLK 456 Score = 30.8 bits (68), Expect = 0.88 Identities = 12/14 (85%), Positives = 14/14 (100%) Frame = -3 Query: 324 SRPLSPFANYPDLK 283 SRPLSP+A+YPDLK Sbjct: 443 SRPLSPYASYPDLK 456
>K2C6B_HUMAN (P04259) Keratin, type II cytoskeletal 6B (Cytokeratin-6B) (CK 6B)| (K6b keratin) Length = 563 Score = 33.1 bits (74), Expect = 0.18 Identities = 19/42 (45%), Positives = 23/42 (54%) Frame = +2 Query: 116 FAYGERGLGFAGGNDSSTASATGAELTSTXGNSVTATSXFTS 241 ++YG GLG GG SS+ ATG L+S G S T TS Sbjct: 514 YSYGS-GLGVGGGFSSSSGRATGGGLSSVGGGSSTIKYTTTS 554
>K2C6E_HUMAN (P48668) Keratin, type II cytoskeletal 6E (Cytokeratin-6E) (CK 6E)| (K6e keratin) (Keratin K6h) Length = 563 Score = 31.2 bits (69), Expect = 0.68 Identities = 18/42 (42%), Positives = 22/42 (52%) Frame = +2 Query: 116 FAYGERGLGFAGGNDSSTASATGAELTSTXGNSVTATSXFTS 241 ++YG GLG GG SS+ A G L+S G S T TS Sbjct: 514 YSYGS-GLGIGGGFSSSSGRAIGGGLSSVGGGSSTIKYTTTS 554
>K2C6D_HUMAN (P48667) Keratin, type II cytoskeletal 6D (Cytokeratin-6D) (CK 6D)| (K6d keratin) (Fragment) Length = 384 Score = 30.8 bits (68), Expect = 0.88 Identities = 18/42 (42%), Positives = 22/42 (52%) Frame = +2 Query: 116 FAYGERGLGFAGGNDSSTASATGAELTSTXGNSVTATSXFTS 241 ++YG GLG GG SS+ A G L+S G S T TS Sbjct: 335 YSYGS-GLGVGGGFSSSSGRAIGGGLSSVGGGSSTIKYTTTS 375
>K2C6C_HUMAN (P48666) Keratin, type II cytoskeletal 6C (Cytokeratin-6C) (CK 6C)| (K6c keratin) Length = 563 Score = 30.8 bits (68), Expect = 0.88 Identities = 18/42 (42%), Positives = 22/42 (52%) Frame = +2 Query: 116 FAYGERGLGFAGGNDSSTASATGAELTSTXGNSVTATSXFTS 241 ++YG GLG GG SS+ A G L+S G S T TS Sbjct: 514 YSYGS-GLGVGGGFSSSSGRAIGGGLSSVGGGSSTIKYTTTS 554
>K2C6A_HUMAN (P02538) Keratin, type II cytoskeletal 6A (Cytokeratin-6A) (CK 6A)| (K6a keratin) Length = 563 Score = 30.8 bits (68), Expect = 0.88 Identities = 18/42 (42%), Positives = 22/42 (52%) Frame = +2 Query: 116 FAYGERGLGFAGGNDSSTASATGAELTSTXGNSVTATSXFTS 241 ++YG GLG GG SS+ A G L+S G S T TS Sbjct: 514 YSYGS-GLGVGGGFSSSSGRAIGGGLSSVGGGSSTIKYTTTS 554
>Y445_MYCPN (P75334) Hypothetical lipoprotein MG309 homolog precursor| (H08_orf1325) Length = 1325 Score = 29.6 bits (65), Expect = 2.0 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +2 Query: 134 GLGFAGGNDSSTASATGAELTSTXGNSVTA 223 G G GG +ST S+TG+ +T GNS A Sbjct: 438 GGGSGGGGGTSTGSSTGSSTETTTGNSSKA 467
>TTLL5_HUMAN (Q6EMB2) Tubulin--tyrosine ligase-like protein 5 (SRC1 and| TIF2-associated modulatory protein) Length = 1277 Score = 29.3 bits (64), Expect = 2.6 Identities = 10/20 (50%), Positives = 14/20 (70%) Frame = -1 Query: 317 PCHHLXIIQISNHRPALPHQ 258 PCHH + QI + P++PHQ Sbjct: 908 PCHHSSLSQIPSAIPSMPHQ 927
>SCM_DROME (Q9VHA0) Polycomb protein Scm (Sex comb on midleg protein)| Length = 877 Score = 28.9 bits (63), Expect = 3.4 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 5/40 (12%) Frame = +2 Query: 146 AGGNDSSTAS-----ATGAELTSTXGNSVTATSXFTSVLP 250 +GG DSST+S A GA +T S +A+S TS P Sbjct: 2 SGGRDSSTSSGSNSAAPGASTNATSSASASASSTSTSASP 41
>SOX14_DROME (P40656) Putative transcription factor SOX-14| Length = 472 Score = 28.1 bits (61), Expect = 5.7 Identities = 19/71 (26%), Positives = 28/71 (39%) Frame = -3 Query: 327 TSRPLSPFANYPDLKXXXXXXXXXSEGKTEVKXDVAVTELPXVEVNSAPVAEAVEESLPP 148 T L PF+ P + G + + A+T V SAPVA A ++ P Sbjct: 49 TPHTLPPFSPSPSPASSPSPAPAQTPGAQKTQSQAAITHPAAVASPSAPVAAAAPKT--P 106 Query: 147 AKPRPLSPYAN 115 P P S + + Sbjct: 107 KTPEPRSTHTH 117
>AXE1_PENPU (Q8NJP6) Acetylxylan esterase 1 precursor (EC 3.1.1.72) (AXE I)| Length = 382 Score = 27.3 bits (59), Expect = 9.8 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%) Frame = +2 Query: 140 GFAGGNDSS--TASATGAELTSTXGNSVTATSXFTS 241 GF+G SS TASAT TST T+++ T+ Sbjct: 306 GFSGSGSSSTTTASATKTSTTSTTSTKTTSSTSSTT 341
>SNX8_HUMAN (Q9Y5X2) Sorting nexin-8| Length = 465 Score = 27.3 bits (59), Expect = 9.8 Identities = 17/38 (44%), Positives = 21/38 (55%) Frame = -3 Query: 222 AVTELPXVEVNSAPVAEAVEESLPPAKPRPLSPYANYP 109 A+ LP V +A AEA EE+ PPA P +P A P Sbjct: 5 AMDPLPAAAVGAAAEAEADEEADPPASDLP-TPQAIEP 41
>MAP1B_RAT (P15205) Microtubule-associated protein 1B (MAP 1B) (Neuraxin)| [Contains: MAP1 light chain LC1] Length = 2459 Score = 27.3 bits (59), Expect = 9.8 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = -3 Query: 249 GKTEVKXDVAVTELPXVEVNSAPVAEAVEESLPPAKPR 136 GK E K V E+P E S AE E++ +KP+ Sbjct: 593 GKVESKPSVTEKEVPSKEEQSPVKAEVAEKAATESKPK 630 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,994,540 Number of Sequences: 219361 Number of extensions: 590253 Number of successful extensions: 1753 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 1682 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1752 length of database: 80,573,946 effective HSP length: 85 effective length of database: 61,928,261 effective search space used: 1486278264 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
