ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags11n11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYI_DECAR (Q47BK5) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isole... 31 3.8
2SYM_STAHJ (Q4L3E7) Methionyl-tRNA synthetase (EC 6.1.1.10) (Meth... 30 6.5

>SYI_DECAR (Q47BK5) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 932

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 376 DNWG*KGSSFWWISRGSFAADHAKEVSGLVQGTTRRR 266
           D W   G++ W + RGS AADH       ++G+ + R
Sbjct: 540 DVWFDSGTTHWHVMRGSHAADHTYPADLYLEGSDQHR 576



to top

>SYM_STAHJ (Q4L3E7) Methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA|
           ligase) (MetRS)
          Length = 659

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 12/39 (30%), Positives = 25/39 (64%)
 Frame = +3

Query: 318 AAKEPLLIHQKLLPFYPQLSAKAQIGRWKRATKIYKNQE 434
           A K+P+++ +K  P +P+L  +A+I   K + +  K++E
Sbjct: 504 ALKQPIMVTEKPTPIFPRLDTEAEIAYIKESMQPPKSEE 542


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,733,051
Number of Sequences: 219361
Number of extensions: 1966895
Number of successful extensions: 4163
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4163
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6370891296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top