ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags11n10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_192882.1| Oryza sativa (japonica cultivar-group), predic... 145 5e-32
2dbj|AK071022.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 5e-32
3dbj|AK060383.1| Oryza sativa (japonica cultivar-group) cDNA clon... 145 5e-32
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 100 2e-18
5dbj|AP002744.2| Oryza sativa (japonica cultivar-group) genomic D... 100 2e-18
6gb|AY106975.1| Zea mays PCO063354 mRNA sequence 78 9e-12
7gb|AC146455.3| Pan troglodytes BAC clone CH251-460B7 from Y, com... 46 0.032
8gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 46 0.032
9gb|AC147659.5| Pan troglodytes BAC clone CH251-425E12 from chrom... 46 0.032
10gb|AC119206.13| Mus musculus chromosome 5, clone RP24-189M4, com... 42 0.51
11gb|AC093275.3| Homo sapiens chromosome 5 clone RP11-379A13, comp... 42 0.51
12gb|AC008674.5| Homo sapiens chromosome 5 clone CTB-43E15, comple... 42 0.51
13gb|AY111254.1| Zea mays CL29988_-2 mRNA sequence 42 0.51
14emb|AJ937769.1| Uncultured epsilon proteobacterium fosmid clone ... 42 0.51
15emb|AL732542.5| Mouse DNA sequence from clone RP23-92H5 on chrom... 42 0.51
16ref|NG_000017.2| Homo sapiens protocadherin beta cluster (PCDHB@... 40 2.0
17gb|AC113309.7| Mus musculus chromosome 6, clone RP23-440D19, com... 40 2.0
18gb|AC160106.2| Mus musculus BAC clone RP24-300H23 from chromosom... 40 2.0
19emb|AL136225.8| Human DNA sequence from clone RP3-471D13 on chro... 40 2.0
20emb|AL671865.11| Mouse DNA sequence from clone RP23-312B13 on ch... 40 2.0
21gb|AC005752.1|AC005752 Homo sapiens chromosome 5, BAC clone 182a... 40 2.0
22emb|AL671338.15| Mouse DNA sequence from clone RP23-113J9 on chr... 40 2.0
23gb|AC152824.4| Mus musculus BAC clone RP24-276N7 from chromosome... 38 7.9
24gb|AC164118.4| Mus musculus BAC clone RP24-263C5 from chromosome... 38 7.9
25gb|BC037023.1| Mus musculus EH domain binding protein 1, mRNA (c... 38 7.9
26gb|AC146201.2| Pan troglodytes BAC clone RP43-34J1 from 7, compl... 38 7.9
27gb|AC154583.3| Mus musculus BAC clone RP23-248H18 from chromosom... 38 7.9
28gb|AC005677.1| Homo sapiens PAC clone RP5-902K19 from 7, complet... 38 7.9
29emb|AL512282.6| Human DNA sequence from clone RP11-141F18 on chr... 38 7.9
30emb|AL669858.8| Mouse DNA sequence from clone RP23-51G7 on chrom... 38 7.9
31dbj|AK089842.1| Mus musculus activated spleen cDNA, RIKEN full-l... 38 7.9
32dbj|AK085964.1| Mus musculus 16 days neonate heart cDNA, RIKEN f... 38 7.9
33gb|AF424697.1| Mus musculus KIAA0903-like protein mRNA, complete... 38 7.9
34dbj|AK173055.1| Mus musculus mRNA for mKIAA0903 protein 38 7.9
35gb|AC132381.4| Mus musculus BAC clone RP23-424F5 from chromosome... 38 7.9
36gb|AC011200.9|AC011200 Homo sapiens chromosome 8 clone RP11-71N3... 38 7.9
37gb|AC131042.6| Homo sapiens chromosome 8, clone CTD-2607C6, comp... 38 7.9
38ref|NM_153078.1| Mus musculus EH domain binding protein 1 (Ehbp1... 38 7.9
39ref|XM_223664.3| PREDICTED: Rattus norvegicus similar to KIAA090... 38 7.9
40emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 38 7.9
41gb|U00089.2| Mycoplasma pneumoniae M129, complete genome 38 7.9
42emb|AL844548.7| Mouse DNA sequence from clone RP23-263D22 on chr... 38 7.9
43emb|CT571278.3| Mouse DNA sequence from clone RP24-372E22 on chr... 38 7.9
44emb|AL954334.4| Mouse DNA sequence from clone RP24-93B5 on chrom... 38 7.9
45emb|AL606987.11| Mouse DNA sequence from clone RP23-383I4 on chr... 38 7.9
46emb|AL606910.14| Mouse DNA sequence from clone RP23-282C23 on ch... 38 7.9
47emb|AL606931.6| Mouse DNA sequence from clone RP23-162H3 on chro... 38 7.9

>ref|NM_192882.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2124

 Score =  145 bits (73), Expect = 5e-32
 Identities = 139/161 (86%)
 Strand = Plus / Minus

                                                                        
Query: 3    gcagctttctgtgagaggataccgcttagtcttgtaacgtagtcgtccagttggttgcca 62
            ||||||||||| ||||| ||||||||||||||||| | ||||||||| ||||||||||||
Sbjct: 2036 gcagctttctgagagagtataccgcttagtcttgtgatgtagtcgtctagttggttgcca 1977

                                                                        
Query: 63   ggctgatctgcttctattagtaagttcatctcctctttaattatgtccagggtctcttcc 122
            || ||||| ||||| | || ||| |||||||||||||| || ||||| ||||||||||||
Sbjct: 1976 ggttgatccgcttcaactaataaattcatctcctctttgatcatgtctagggtctcttcc 1917

                                                     
Query: 123  acctgctttctgtgaacactaactaaatcttcctcttcctg 163
            |||||||| |  ||| ||   || |||||||||||||||||
Sbjct: 1916 acctgcttccgatgagcagacaccaaatcttcctcttcctg 1876



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>dbj|AK071022.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079H05, full
           insert sequence
          Length = 1040

 Score =  145 bits (73), Expect = 5e-32
 Identities = 139/161 (86%)
 Strand = Plus / Minus

                                                                       
Query: 3   gcagctttctgtgagaggataccgcttagtcttgtaacgtagtcgtccagttggttgcca 62
           ||||||||||| ||||| ||||||||||||||||| | ||||||||| ||||||||||||
Sbjct: 526 gcagctttctgagagagtataccgcttagtcttgtgatgtagtcgtctagttggttgcca 467

                                                                       
Query: 63  ggctgatctgcttctattagtaagttcatctcctctttaattatgtccagggtctcttcc 122
           || ||||| ||||| | || ||| |||||||||||||| || ||||| ||||||||||||
Sbjct: 466 ggttgatccgcttcaactaataaattcatctcctctttgatcatgtctagggtctcttcc 407

                                                    
Query: 123 acctgctttctgtgaacactaactaaatcttcctcttcctg 163
           |||||||| |  ||| ||   || |||||||||||||||||
Sbjct: 406 acctgcttccgatgagcagacaccaaatcttcctcttcctg 366



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>dbj|AK060383.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-009-F02, full
           insert sequence
          Length = 1456

 Score =  145 bits (73), Expect = 5e-32
 Identities = 139/161 (86%)
 Strand = Plus / Minus

                                                                       
Query: 3   gcagctttctgtgagaggataccgcttagtcttgtaacgtagtcgtccagttggttgcca 62
           ||||||||||| ||||| ||||||||||||||||| | ||||||||| ||||||||||||
Sbjct: 942 gcagctttctgagagagtataccgcttagtcttgtgatgtagtcgtctagttggttgcca 883

                                                                       
Query: 63  ggctgatctgcttctattagtaagttcatctcctctttaattatgtccagggtctcttcc 122
           || ||||| ||||| | || ||| |||||||||||||| || ||||| ||||||||||||
Sbjct: 882 ggttgatccgcttcaactaataaattcatctcctctttgatcatgtctagggtctcttcc 823

                                                    
Query: 123 acctgctttctgtgaacactaactaaatcttcctcttcctg 163
           |||||||| |  ||| ||   || |||||||||||||||||
Sbjct: 822 acctgcttccgatgagcagacaccaaatcttcctcttcctg 782



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 99.6 bits (50), Expect = 2e-18
 Identities = 83/94 (88%)
 Strand = Plus / Minus

                                                                            
Query: 3        gcagctttctgtgagaggataccgcttagtcttgtaacgtagtcgtccagttggttgcca 62
                ||||||||||| ||||| ||||||||||||||||| | ||||||||| ||||||||||||
Sbjct: 24958423 gcagctttctgagagagtataccgcttagtcttgtgatgtagtcgtctagttggttgcca 24958364

                                                  
Query: 63       ggctgatctgcttctattagtaagttcatctcct 96
                || ||||| ||||| | || ||| ||||||||||
Sbjct: 24958363 ggttgatccgcttcaactaataaattcatctcct 24958330



 Score = 52.0 bits (26), Expect = 5e-04
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                            
Query: 94       cctctttaattatgtccagggtctcttccacctgctttctgtgaacactaactaaatctt 153
                ||||||| || ||||| |||||||||||||||||||| |  ||| ||   || |||||||
Sbjct: 24958241 cctctttgatcatgtctagggtctcttccacctgcttccgatgagcagacaccaaatctt 24958182

                          
Query: 154      cctcttcctg 163
                ||||||||||
Sbjct: 24958181 cctcttcctg 24958172



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>dbj|AP002744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0006C01
          Length = 153865

 Score = 99.6 bits (50), Expect = 2e-18
 Identities = 83/94 (88%)
 Strand = Plus / Minus

                                                                         
Query: 3     gcagctttctgtgagaggataccgcttagtcttgtaacgtagtcgtccagttggttgcca 62
             ||||||||||| ||||| ||||||||||||||||| | ||||||||| ||||||||||||
Sbjct: 30946 gcagctttctgagagagtataccgcttagtcttgtgatgtagtcgtctagttggttgcca 30887

                                               
Query: 63    ggctgatctgcttctattagtaagttcatctcct 96
             || ||||| ||||| | || ||| ||||||||||
Sbjct: 30886 ggttgatccgcttcaactaataaattcatctcct 30853



 Score = 52.0 bits (26), Expect = 5e-04
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                         
Query: 94    cctctttaattatgtccagggtctcttccacctgctttctgtgaacactaactaaatctt 153
             ||||||| || ||||| |||||||||||||||||||| |  ||| ||   || |||||||
Sbjct: 30764 cctctttgatcatgtctagggtctcttccacctgcttccgatgagcagacaccaaatctt 30705

                       
Query: 154   cctcttcctg 163
             ||||||||||
Sbjct: 30704 cctcttcctg 30695



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>gb|AY106975.1| Zea mays PCO063354 mRNA sequence
          Length = 971

 Score = 77.8 bits (39), Expect = 9e-12
 Identities = 126/155 (81%)
 Strand = Plus / Minus

                                                                       
Query: 9   ttctgtgagaggataccgcttagtcttgtaacgtagtcgtccagttggttgccaggctga 68
           ||||| ||||| |||| |||||||||||| | |||||| || ||||||  ||||||||||
Sbjct: 445 ttctgcgagagcatactgcttagtcttgtgatgtagtcatcgagttggaagccaggctga 386

                                                                       
Query: 69  tctgcttctattagtaagttcatctcctctttaattatgtccagggtctcttccacctgc 128
           || || ||   || || |||||| |||||||| |  | |||||| ||||| || ||||||
Sbjct: 385 tccgcgtcgcctaatatgttcatttcctctttgaggaagtccagagtctcctcaacctgc 326

                                              
Query: 129 tttctgtgaacactaactaaatcttcctcttcctg 163
           || || ||| ||||||| || ||||||||||||||
Sbjct: 325 ttcctatgagcactaaccaagtcttcctcttcctg 291



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>gb|AC146455.3| Pan troglodytes BAC clone CH251-460B7 from Y, complete sequence
          Length = 211439

 Score = 46.1 bits (23), Expect = 0.032
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 57   ttgccaggctgatctgcttctat 79
            |||||||||||||||||||||||
Sbjct: 6073 ttgccaggctgatctgcttctat 6095



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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 46.1 bits (23), Expect = 0.032
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 57      ttgccaggctgatctgcttctat 79
               |||||||||||||||||||||||
Sbjct: 7498245 ttgccaggctgatctgcttctat 7498267



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>gb|AC147659.5| Pan troglodytes BAC clone CH251-425E12 from chromosome y, complete
             sequence
          Length = 168988

 Score = 46.1 bits (23), Expect = 0.032
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 57    ttgccaggctgatctgcttctat 79
             |||||||||||||||||||||||
Sbjct: 77392 ttgccaggctgatctgcttctat 77414



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>gb|AC119206.13| Mus musculus chromosome 5, clone RP24-189M4, complete sequence
          Length = 168721

 Score = 42.1 bits (21), Expect = 0.51
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 57    ttgccaggctgatctgcttctatta 81
             ||||||| |||||||||||||||||
Sbjct: 95847 ttgccagtctgatctgcttctatta 95823



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>gb|AC093275.3| Homo sapiens chromosome 5 clone RP11-379A13, complete sequence
          Length = 170823

 Score = 42.1 bits (21), Expect = 0.51
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 126  tgctttctgtgaacactaactaaat 150
            ||||||||||||||||| |||||||
Sbjct: 9597 tgctttctgtgaacacttactaaat 9573



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>gb|AC008674.5| Homo sapiens chromosome 5 clone CTB-43E15, complete sequence
          Length = 178502

 Score = 42.1 bits (21), Expect = 0.51
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 126  tgctttctgtgaacactaactaaat 150
            ||||||||||||||||| |||||||
Sbjct: 1594 tgctttctgtgaacacttactaaat 1618



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>gb|AY111254.1| Zea mays CL29988_-2 mRNA sequence
          Length = 565

 Score = 42.1 bits (21), Expect = 0.51
 Identities = 59/71 (83%), Gaps = 3/71 (4%)
 Strand = Plus / Plus

                                                                       
Query: 9   ttctgtgagaggataccgcttagtcttgtaacgt---agtcgtccagttggttgccaggc 65
           ||||| ||||| |||| ||||||||| |||| ||   ||||||| ||||||  |||||||
Sbjct: 463 ttctgcgagagtatactgcttagtctcgtaatgttgnagtcgtcaagttggaagccaggc 522

                      
Query: 66  tgatctgcttc 76
           ||||| |||||
Sbjct: 523 tgatccgcttc 533



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>emb|AJ937769.1| Uncultured epsilon proteobacterium fosmid clone b1dcf1.3.c08
          Length = 38167

 Score = 42.1 bits (21), Expect = 0.51
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 140   actaactaaatcttcctcttc 160
             |||||||||||||||||||||
Sbjct: 19986 actaactaaatcttcctcttc 19966



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>emb|AL732542.5| Mouse DNA sequence from clone RP23-92H5 on chromosome 2, complete
             sequence
          Length = 72586

 Score = 42.1 bits (21), Expect = 0.51
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 87    ttcatctcctctttaattatg 107
             |||||||||||||||||||||
Sbjct: 65106 ttcatctcctctttaattatg 65126



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>ref|NG_000017.2| Homo sapiens protocadherin beta cluster (PCDHB@) on chromosome 5
          Length = 257923

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 116    ctcttccacctgctttctgt 135
              ||||||||||||||||||||
Sbjct: 175428 ctcttccacctgctttctgt 175447



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>gb|AC113309.7| Mus musculus chromosome 6, clone RP23-440D19, complete sequence
          Length = 229553

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    tttaattatgtccagggtct 117
             ||||||||||||||||||||
Sbjct: 46913 tttaattatgtccagggtct 46894



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>gb|AC160106.2| Mus musculus BAC clone RP24-300H23 from chromosome 13, complete sequence
          Length = 184364

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 115    tctcttccacctgctttctg 134
              ||||||||||||||||||||
Sbjct: 145178 tctcttccacctgctttctg 145159



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>emb|AL136225.8| Human DNA sequence from clone RP3-471D13 on chromosome 6 Contains a CpG
             island, complete sequence
          Length = 42171

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   tgtccagggtctcttccacc 125
             ||||||||||||||||||||
Sbjct: 30674 tgtccagggtctcttccacc 30693



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>emb|AL671865.11| Mouse DNA sequence from clone RP23-312B13 on chromosome X, complete
              sequence
          Length = 226471

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 92     ctcctctttaattatgtcca 111
              ||||||||||||||||||||
Sbjct: 221794 ctcctctttaattatgtcca 221813



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>gb|AC005752.1|AC005752 Homo sapiens chromosome 5, BAC clone 182a8 (LBNL H161), complete
             sequence
          Length = 101072

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   ctcttccacctgctttctgt 135
             ||||||||||||||||||||
Sbjct: 82496 ctcttccacctgctttctgt 82477



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>emb|AL671338.15| Mouse DNA sequence from clone RP23-113J9 on chromosome 4, complete
             sequence
          Length = 172327

 Score = 40.1 bits (20), Expect = 2.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 58    tgccaggctgatctgcttct 77
             ||||||||||||||||||||
Sbjct: 67745 tgccaggctgatctgcttct 67726



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>gb|AC152824.4| Mus musculus BAC clone RP24-276N7 from chromosome 5, complete sequence
          Length = 194291

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 120    tccacctgctttctgtgaa 138
              |||||||||||||||||||
Sbjct: 117761 tccacctgctttctgtgaa 117743



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>gb|AC164118.4| Mus musculus BAC clone RP24-263C5 from chromosome 5, complete sequence
          Length = 166574

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 120    tccacctgctttctgtgaa 138
              |||||||||||||||||||
Sbjct: 143444 tccacctgctttctgtgaa 143462



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>gb|BC037023.1| Mus musculus EH domain binding protein 1, mRNA (cDNA clone
           IMAGE:5367290), with apparent retained intron
          Length = 2621

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 77  tattagtaagttcatctcc 95
           |||||||||||||||||||
Sbjct: 755 tattagtaagttcatctcc 737



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>gb|AC146201.2| Pan troglodytes BAC clone RP43-34J1 from 7, complete sequence
          Length = 169640

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 116   ctcttccacctgctttctgtgaa 138
             |||||||| ||||||||||||||
Sbjct: 46117 ctcttccaactgctttctgtgaa 46095



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>gb|AC154583.3| Mus musculus BAC clone RP23-248H18 from chromosome 13, complete sequence
          Length = 191052

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 115    tctcttccacctgctttct 133
              |||||||||||||||||||
Sbjct: 171681 tctcttccacctgctttct 171699



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>gb|AC005677.1| Homo sapiens PAC clone RP5-902K19 from 7, complete sequence
          Length = 24159

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 116   ctcttccacctgctttctgtgaa 138
             |||||||| ||||||||||||||
Sbjct: 17089 ctcttccaactgctttctgtgaa 17067



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>emb|AL512282.6| Human DNA sequence from clone RP11-141F18 on chromosome X, complete
           sequence
          Length = 12748

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 91  tctcctctttaattatgtc 109
           |||||||||||||||||||
Sbjct: 202 tctcctctttaattatgtc 220



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>emb|AL669858.8| Mouse DNA sequence from clone RP23-51G7 on chromosome 11 Contains a
              ribosomal protein L15 (Rpl15) pseudogene, the Otx1 gene for
              orthodenticle homolog 1, the 3' end of a novel gene and two
              CpG islands, complete sequence
          Length = 240514

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 77     tattagtaagttcatctcc 95
              |||||||||||||||||||
Sbjct: 120155 tattagtaagttcatctcc 120173



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>dbj|AK089842.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
            library, clone:F830032C05 product:unclassifiable, full
            insert sequence
          Length = 2181

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 115  tctcttccacctgctttct 133
            |||||||||||||||||||
Sbjct: 2077 tctcttccacctgctttct 2095



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>dbj|AK085964.1| Mus musculus 16 days neonate heart cDNA, RIKEN full-length enriched
           library, clone:D830035F23 product:unclassifiable, full
           insert sequence
          Length = 2498

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 77  tattagtaagttcatctcc 95
           |||||||||||||||||||
Sbjct: 560 tattagtaagttcatctcc 542



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>gb|AF424697.1| Mus musculus KIAA0903-like protein mRNA, complete cds
          Length = 4820

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 77   tattagtaagttcatctcc 95
            |||||||||||||||||||
Sbjct: 2978 tattagtaagttcatctcc 2960



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>dbj|AK173055.1| Mus musculus mRNA for mKIAA0903 protein
          Length = 5044

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 77   tattagtaagttcatctcc 95
            |||||||||||||||||||
Sbjct: 3204 tattagtaagttcatctcc 3186



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>gb|AC132381.4| Mus musculus BAC clone RP23-424F5 from chromosome 1, complete sequence
          Length = 207002

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 121    ccacctgctttctgtgaacacta 143
              |||| ||||||||||||||||||
Sbjct: 121015 ccacatgctttctgtgaacacta 120993



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>gb|AC011200.9|AC011200 Homo sapiens chromosome 8 clone RP11-71N3, complete sequence
          Length = 161271

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 145    ctaaatcttcctcttcctg 163
              |||||||||||||||||||
Sbjct: 119367 ctaaatcttcctcttcctg 119385



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>gb|AC131042.6| Homo sapiens chromosome 8, clone CTD-2607C6, complete sequence
          Length = 152632

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 145   ctaaatcttcctcttcctg 163
             |||||||||||||||||||
Sbjct: 42566 ctaaatcttcctcttcctg 42548



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>ref|NM_153078.1| Mus musculus EH domain binding protein 1 (Ehbp1), mRNA
          Length = 4820

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 77   tattagtaagttcatctcc 95
            |||||||||||||||||||
Sbjct: 2978 tattagtaagttcatctcc 2960



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>ref|XM_223664.3| PREDICTED: Rattus norvegicus similar to KIAA0903-like protein
            (predicted) (LOC305556), mRNA
          Length = 4467

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 77   tattagtaagttcatctcc 95
            |||||||||||||||||||
Sbjct: 3301 tattagtaagttcatctcc 3283



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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 106     tgtccagggtctcttccacctgc 128
               |||||||||||||| ||||||||
Sbjct: 1315871 tgtccagggtctctaccacctgc 1315849



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>gb|U00089.2| Mycoplasma pneumoniae M129, complete genome
          Length = 816394

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 71     tgcttctattagtaagttc 89
              |||||||||||||||||||
Sbjct: 499945 tgcttctattagtaagttc 499963



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>emb|AL844548.7| Mouse DNA sequence from clone RP23-263D22 on chromosome 2, complete
              sequence
          Length = 198946

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 118    cttccacctgctttctgtg 136
              |||||||||||||||||||
Sbjct: 150460 cttccacctgctttctgtg 150442



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>emb|CT571278.3| Mouse DNA sequence from clone RP24-372E22 on chromosome 13, complete
            sequence
          Length = 47954

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 115  tctcttccacctgctttct 133
            |||||||||||||||||||
Sbjct: 5667 tctcttccacctgctttct 5649



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>emb|AL954334.4| Mouse DNA sequence from clone RP24-93B5 on chromosome 4, complete
             sequence
          Length = 125201

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 115   tctcttccacctgctttct 133
             |||||||||||||||||||
Sbjct: 81572 tctcttccacctgctttct 81554



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>emb|AL606987.11| Mouse DNA sequence from clone RP23-383I4 on chromosome 4, complete
              sequence
          Length = 212647

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 115    tctcttccacctgctttct 133
              |||||||||||||||||||
Sbjct: 140174 tctcttccacctgctttct 140192



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>emb|AL606910.14| Mouse DNA sequence from clone RP23-282C23 on chromosome 4, complete
             sequence
          Length = 185210

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 115   tctcttccacctgctttct 133
             |||||||||||||||||||
Sbjct: 70151 tctcttccacctgctttct 70169



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>emb|AL606931.6| Mouse DNA sequence from clone RP23-162H3 on chromosome 4, complete
             sequence
          Length = 108136

 Score = 38.2 bits (19), Expect = 7.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 115   tctcttccacctgctttct 133
             |||||||||||||||||||
Sbjct: 70932 tctcttccacctgctttct 70914


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,740,653
Number of Sequences: 3902068
Number of extensions: 1740653
Number of successful extensions: 164189
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 163943
Number of HSP's gapped (non-prelim): 246
length of query: 163
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 141
effective length of database: 17,147,199,772
effective search space: 2417755167852
effective search space used: 2417755167852
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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