| Clone Name | rbags11n09 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ308488.1|HVU308488 Hordeum vulgare mRNA for allene oxide cyclase (aoc gene) Length = 920 Score = 946 bits (477), Expect = 0.0 Identities = 505/509 (99%), Gaps = 4/509 (0%) Strand = Plus / Minus Query: 26 ttgcaacacacggagattcattcaacttgcacgactgcacgagcagttggtgtacataac 85 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 868 ttgcaacacacggagattcattcaacttgcacgactgcacgagcagttggtgtacataac 809 Query: 86 atagctaggtagagtagatcacaggtacagctagtcagtgaagttgttgaggcatgcgtg 145 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 808 atagctaggtagagtagatcacaggtacagctagtcagtgaagttgttgaggcatgcgtg 749 Query: 146 tggctcggtggccttggcggcgggcgttggctcgacggtgggggaaggcgggacgggcgt 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 748 tggctcggtggccttggcggcgggcgttggctcgacggtgggggaaggcgggacgggcgt 689 Query: 206 gcagagcagctcctttggcaggtccgggatgcccttgaggtagaaagtgtagaagatctt 265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 688 gcagagcagctcctttggcaggtccgggatgcccttgaggtagaaagtgtagaagatctt 629 Query: 266 gaaggggaagacgatctggttgagcttgacctgcccgtagacgccctcgaagacgccgga 325 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 628 gaaggggaagacgatctggttgagcttgacctgcccgtagacgccctcgaagacgccgga 569 Query: 326 gcctcctgtgacggcgaggtaggactcctcgtaggtgaggtagggcccctgcaggctgat 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 568 gcctcctgtgacggcgaggtaggactcctcgtaggtgaggtagggcccctgcaggctgat 509 Query: 386 gtggcccgtagtcgcccgaagtacatgctgtagatggccctcgtagcggtcgccgttgcg 445 |||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 508 gtgg-ccgtagtcg-ccgaagtacatgctgtagatgg-cctcgtagcggtcgccgttgcg 452 Query: 446 ctccggcacgtgctggatcaggatgcagatccccgccgtgatcccgatccgcttgtccag 505 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 451 ctccggcacgtgctggatcaggatgcagatccccgccgtgatcccgatccgcttgtccag 392 Query: 506 gcttcccgttgtacaccttgttggtgaag 534 || |||||||||||||||||||||||||| Sbjct: 391 gc-tcccgttgtacaccttgttggtgaag 364
>ref|XM_468844.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1265 Score = 533 bits (269), Expect = e-148 Identities = 387/421 (91%), Gaps = 4/421 (0%) Strand = Plus / Minus Query: 114 agctagtcagtgaagttgttgaggcatgcgtgtggctcggtggccttggcggcgggcgtt 173 ||||||| ||||||||||||||||| ||||| |||||||||||||||||||| |||||| Sbjct: 836 agctagttggtgaagttgttgaggcaggcgtggggctcggtggccttggcggctggcgtt 777 Query: 174 ggctcgacggtgggggaaggcgggacgggcgtgcagagcagctcctttggcaggtccggg 233 ||||||||||| ||||| ||||||||||||||||||||||||||| |||||||| ||| Sbjct: 776 ggctcgacggtcggggacggcgggacgggcgtgcagagcagctcccgcggcaggtcgggg 717 Query: 234 atgcccttgaggtagaaagtgtagaagatcttgaaggggaagacgatctggttgagcttg 293 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 716 atgcccttgaggtagaaggtgtagaagatcttgaaggggaagacgatctggttgagcttg 657 Query: 294 acctgcccgtagacgccctcgaagacgccggagcctcctgtgacggcgaggtaggactcc 353 ||||| |||||| |||| ||||||||||||||||| || ||||||||||||||||||||| Sbjct: 656 acctggccgtaggcgccttcgaagacgccggagccgccggtgacggcgaggtaggactcc 597 Query: 354 tcgtaggtgaggtagggcccctgcaggctgatgtggcccgtagtcgcccgaagtacatgc 413 |||||||| ||||| || ||||||| | ||||||| ||||||||| |||||||| | || Sbjct: 596 tcgtaggtcaggtacgggccctgcacggagatgtgg-ccgtagtcg-ccgaagtagaagc 539 Query: 414 tgtagatggccctcgtagcggtcgccgttgcgctccggcacgtgctggatcaggatgcag 473 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 538 tgtagatgg-cctcgtagcggtcgccgttgcgctccggcacgtgctggatcaggatgcag 480 Query: 474 atccccgccgtgatcccgatccgcttgtccaggcttcccgttgtacaccttgttggtgaa 533 |||||||||| |||||| | |||||||||||||||| ||| |||||| |||||||||||| Sbjct: 479 atccccgccgagatccccagccgcttgtccaggctt-ccgctgtacagcttgttggtgaa 421 Query: 534 g 534 | Sbjct: 420 g 420
>emb|AJ493664.1|OSA493664 Oryza sativa mRNA for allene oxide cyclase (aoc gene) Length = 1171 Score = 533 bits (269), Expect = e-148 Identities = 387/421 (91%), Gaps = 4/421 (0%) Strand = Plus / Minus Query: 114 agctagtcagtgaagttgttgaggcatgcgtgtggctcggtggccttggcggcgggcgtt 173 ||||||| ||||||||||||||||| ||||| |||||||||||||||||||| |||||| Sbjct: 811 agctagttggtgaagttgttgaggcaggcgtggggctcggtggccttggcggctggcgtt 752 Query: 174 ggctcgacggtgggggaaggcgggacgggcgtgcagagcagctcctttggcaggtccggg 233 ||||||||||| ||||| ||||||||||||||||||||||||||| |||||||| ||| Sbjct: 751 ggctcgacggtcggggacggcgggacgggcgtgcagagcagctcccgcggcaggtcgggg 692 Query: 234 atgcccttgaggtagaaagtgtagaagatcttgaaggggaagacgatctggttgagcttg 293 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 691 atgcccttgaggtagaaggtgtagaagatcttgaaggggaagacgatctggttgagcttg 632 Query: 294 acctgcccgtagacgccctcgaagacgccggagcctcctgtgacggcgaggtaggactcc 353 ||||| |||||| |||| ||||||||||||||||| || ||||||||||||||||||||| Sbjct: 631 acctggccgtaggcgccttcgaagacgccggagccgccggtgacggcgaggtaggactcc 572 Query: 354 tcgtaggtgaggtagggcccctgcaggctgatgtggcccgtagtcgcccgaagtacatgc 413 |||||||| ||||| || ||||||| | ||||||| ||||||||| |||||||| | || Sbjct: 571 tcgtaggtcaggtacgggccctgcacggagatgtgg-ccgtagtcg-ccgaagtagaagc 514 Query: 414 tgtagatggccctcgtagcggtcgccgttgcgctccggcacgtgctggatcaggatgcag 473 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 513 tgtagatgg-cctcgtagcggtcgccgttgcgctccggcacgtgctggatcaggatgcag 455 Query: 474 atccccgccgtgatcccgatccgcttgtccaggcttcccgttgtacaccttgttggtgaa 533 |||||||||| |||||| | |||||||||||||||| ||| |||||| |||||||||||| Sbjct: 454 atccccgccgagatccccagccgcttgtccaggctt-ccgctgtacagcttgttggtgaa 396 Query: 534 g 534 | Sbjct: 395 g 395
>dbj|AK071443.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091K18, full insert sequence Length = 1207 Score = 533 bits (269), Expect = e-148 Identities = 387/421 (91%), Gaps = 4/421 (0%) Strand = Plus / Minus Query: 114 agctagtcagtgaagttgttgaggcatgcgtgtggctcggtggccttggcggcgggcgtt 173 ||||||| ||||||||||||||||| ||||| |||||||||||||||||||| |||||| Sbjct: 852 agctagttggtgaagttgttgaggcaggcgtggggctcggtggccttggcggctggcgtt 793 Query: 174 ggctcgacggtgggggaaggcgggacgggcgtgcagagcagctcctttggcaggtccggg 233 ||||||||||| ||||| ||||||||||||||||||||||||||| |||||||| ||| Sbjct: 792 ggctcgacggtcggggacggcgggacgggcgtgcagagcagctcccgcggcaggtcgggg 733 Query: 234 atgcccttgaggtagaaagtgtagaagatcttgaaggggaagacgatctggttgagcttg 293 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 732 atgcccttgaggtagaaggtgtagaagatcttgaaggggaagacgatctggttgagcttg 673 Query: 294 acctgcccgtagacgccctcgaagacgccggagcctcctgtgacggcgaggtaggactcc 353 ||||| |||||| |||| ||||||||||||||||| || ||||||||||||||||||||| Sbjct: 672 acctggccgtaggcgccttcgaagacgccggagccgccggtgacggcgaggtaggactcc 613 Query: 354 tcgtaggtgaggtagggcccctgcaggctgatgtggcccgtagtcgcccgaagtacatgc 413 |||||||| ||||| || ||||||| | ||||||| ||||||||| |||||||| | || Sbjct: 612 tcgtaggtcaggtacgggccctgcacggagatgtgg-ccgtagtcg-ccgaagtagaagc 555 Query: 414 tgtagatggccctcgtagcggtcgccgttgcgctccggcacgtgctggatcaggatgcag 473 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 554 tgtagatgg-cctcgtagcggtcgccgttgcgctccggcacgtgctggatcaggatgcag 496 Query: 474 atccccgccgtgatcccgatccgcttgtccaggcttcccgttgtacaccttgttggtgaa 533 |||||||||| |||||| | |||||||||||||||| ||| |||||| |||||||||||| Sbjct: 495 atccccgccgagatccccagccgcttgtccaggctt-ccgctgtacagcttgttggtgaa 437 Query: 534 g 534 | Sbjct: 436 g 436
>dbj|AK060025.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-B07, full insert sequence Length = 1059 Score = 525 bits (265), Expect = e-146 Identities = 386/421 (91%), Gaps = 4/421 (0%) Strand = Plus / Minus Query: 114 agctagtcagtgaagttgttgaggcatgcgtgtggctcggtggccttggcggcgggcgtt 173 ||||||| ||||||||||||||||| ||||| |||||||||||||||||||| |||||| Sbjct: 741 agctagttggtgaagttgttgaggcaggcgtggggctcggtggccttggcggctggcgtt 682 Query: 174 ggctcgacggtgggggaaggcgggacgggcgtgcagagcagctcctttggcaggtccggg 233 ||||||||||| ||||| ||||||||||||||||||||||||||| |||||||| ||| Sbjct: 681 ggctcgacggtcggggacggcgggacgggcgtgcagagcagctcccgcggcaggtcgggg 622 Query: 234 atgcccttgaggtagaaagtgtagaagatcttgaaggggaagacgatctggttgagcttg 293 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 621 atgcccttgaggtagaaggtgtagaagatcttgaaggggaagacgatctggttgagcttg 562 Query: 294 acctgcccgtagacgccctcgaagacgccggagcctcctgtgacggcgaggtaggactcc 353 ||||| |||||| |||| ||||||||||||||||| || || |||||||||||||||||| Sbjct: 561 acctggccgtaggcgccttcgaagacgccggagccgccggtaacggcgaggtaggactcc 502 Query: 354 tcgtaggtgaggtagggcccctgcaggctgatgtggcccgtagtcgcccgaagtacatgc 413 |||||||| ||||| || ||||||| | ||||||| ||||||||| |||||||| | || Sbjct: 501 tcgtaggtcaggtacgggccctgcacggagatgtgg-ccgtagtcg-ccgaagtagaagc 444 Query: 414 tgtagatggccctcgtagcggtcgccgttgcgctccggcacgtgctggatcaggatgcag 473 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 443 tgtagatgg-cctcgtagcggtcgccgttgcgctccggcacgtgctggatcaggatgcag 385 Query: 474 atccccgccgtgatcccgatccgcttgtccaggcttcccgttgtacaccttgttggtgaa 533 |||||||||| |||||| | |||||||||||||||| ||| |||||| |||||||||||| Sbjct: 384 atccccgccgagatccccagccgcttgtccaggctt-ccgctgtacagcttgttggtgaa 326 Query: 534 g 534 | Sbjct: 325 g 325
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 519 bits (262), Expect = e-144 Identities = 367/398 (92%), Gaps = 3/398 (0%) Strand = Plus / Plus Query: 114 agctagtcagtgaagttgttgaggcatgcgtgtggctcggtggccttggcggcgggcgtt 173 ||||||| ||||||||||||||||| ||||| |||||||||||||||||||| |||||| Sbjct: 18298027 agctagttggtgaagttgttgaggcaggcgtggggctcggtggccttggcggctggcgtt 18298086 Query: 174 ggctcgacggtgggggaaggcgggacgggcgtgcagagcagctcctttggcaggtccggg 233 ||||||||||| ||||| ||||||||||||||||||||||||||| |||||||| ||| Sbjct: 18298087 ggctcgacggtcggggacggcgggacgggcgtgcagagcagctcccgcggcaggtcgggg 18298146 Query: 234 atgcccttgaggtagaaagtgtagaagatcttgaaggggaagacgatctggttgagcttg 293 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 18298147 atgcccttgaggtagaaggtgtagaagatcttgaaggggaagacgatctggttgagcttg 18298206 Query: 294 acctgcccgtagacgccctcgaagacgccggagcctcctgtgacggcgaggtaggactcc 353 ||||| |||||| |||| ||||||||||||||||| || ||||||||||||||||||||| Sbjct: 18298207 acctggccgtaggcgccttcgaagacgccggagccgccggtgacggcgaggtaggactcc 18298266 Query: 354 tcgtaggtgaggtagggcccctgcaggctgatgtggcccgtagtcgcccgaagtacatgc 413 |||||||| ||||| || ||||||| | ||||||| ||||||||| |||||||| | || Sbjct: 18298267 tcgtaggtcaggtacgggccctgcacggagatgtgg-ccgtagtcg-ccgaagtagaagc 18298324 Query: 414 tgtagatggccctcgtagcggtcgccgttgcgctccggcacgtgctggatcaggatgcag 473 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18298325 tgtagatgg-cctcgtagcggtcgccgttgcgctccggcacgtgctggatcaggatgcag 18298383 Query: 474 atccccgccgtgatcccgatccgcttgtccaggcttcc 511 |||||||||| |||||| | |||||||||||||||||| Sbjct: 18298384 atccccgccgagatccccagccgcttgtccaggcttcc 18298421
>gb|AC106887.3| Oryza sativa chromosome 3 BAC OSJNBa0054H04 genomic sequence, complete sequence Length = 159579 Score = 519 bits (262), Expect = e-144 Identities = 367/398 (92%), Gaps = 3/398 (0%) Strand = Plus / Plus Query: 114 agctagtcagtgaagttgttgaggcatgcgtgtggctcggtggccttggcggcgggcgtt 173 ||||||| ||||||||||||||||| ||||| |||||||||||||||||||| |||||| Sbjct: 64458 agctagttggtgaagttgttgaggcaggcgtggggctcggtggccttggcggctggcgtt 64517 Query: 174 ggctcgacggtgggggaaggcgggacgggcgtgcagagcagctcctttggcaggtccggg 233 ||||||||||| ||||| ||||||||||||||||||||||||||| |||||||| ||| Sbjct: 64518 ggctcgacggtcggggacggcgggacgggcgtgcagagcagctcccgcggcaggtcgggg 64577 Query: 234 atgcccttgaggtagaaagtgtagaagatcttgaaggggaagacgatctggttgagcttg 293 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 64578 atgcccttgaggtagaaggtgtagaagatcttgaaggggaagacgatctggttgagcttg 64637 Query: 294 acctgcccgtagacgccctcgaagacgccggagcctcctgtgacggcgaggtaggactcc 353 ||||| |||||| |||| ||||||||||||||||| || ||||||||||||||||||||| Sbjct: 64638 acctggccgtaggcgccttcgaagacgccggagccgccggtgacggcgaggtaggactcc 64697 Query: 354 tcgtaggtgaggtagggcccctgcaggctgatgtggcccgtagtcgcccgaagtacatgc 413 |||||||| ||||| || ||||||| | ||||||| ||||||||| |||||||| | || Sbjct: 64698 tcgtaggtcaggtacgggccctgcacggagatgtgg-ccgtagtcg-ccgaagtagaagc 64755 Query: 414 tgtagatggccctcgtagcggtcgccgttgcgctccggcacgtgctggatcaggatgcag 473 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 64756 tgtagatgg-cctcgtagcggtcgccgttgcgctccggcacgtgctggatcaggatgcag 64814 Query: 474 atccccgccgtgatcccgatccgcttgtccaggcttcc 511 |||||||||| |||||| | |||||||||||||||||| Sbjct: 64815 atccccgccgagatccccagccgcttgtccaggcttcc 64852
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 519 bits (262), Expect = e-144 Identities = 367/398 (92%), Gaps = 3/398 (0%) Strand = Plus / Plus Query: 114 agctagtcagtgaagttgttgaggcatgcgtgtggctcggtggccttggcggcgggcgtt 173 ||||||| ||||||||||||||||| ||||| |||||||||||||||||||| |||||| Sbjct: 18292027 agctagttggtgaagttgttgaggcaggcgtggggctcggtggccttggcggctggcgtt 18292086 Query: 174 ggctcgacggtgggggaaggcgggacgggcgtgcagagcagctcctttggcaggtccggg 233 ||||||||||| ||||| ||||||||||||||||||||||||||| |||||||| ||| Sbjct: 18292087 ggctcgacggtcggggacggcgggacgggcgtgcagagcagctcccgcggcaggtcgggg 18292146 Query: 234 atgcccttgaggtagaaagtgtagaagatcttgaaggggaagacgatctggttgagcttg 293 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 18292147 atgcccttgaggtagaaggtgtagaagatcttgaaggggaagacgatctggttgagcttg 18292206 Query: 294 acctgcccgtagacgccctcgaagacgccggagcctcctgtgacggcgaggtaggactcc 353 ||||| |||||| |||| ||||||||||||||||| || ||||||||||||||||||||| Sbjct: 18292207 acctggccgtaggcgccttcgaagacgccggagccgccggtgacggcgaggtaggactcc 18292266 Query: 354 tcgtaggtgaggtagggcccctgcaggctgatgtggcccgtagtcgcccgaagtacatgc 413 |||||||| ||||| || ||||||| | ||||||| ||||||||| |||||||| | || Sbjct: 18292267 tcgtaggtcaggtacgggccctgcacggagatgtgg-ccgtagtcg-ccgaagtagaagc 18292324 Query: 414 tgtagatggccctcgtagcggtcgccgttgcgctccggcacgtgctggatcaggatgcag 473 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 18292325 tgtagatgg-cctcgtagcggtcgccgttgcgctccggcacgtgctggatcaggatgcag 18292383 Query: 474 atccccgccgtgatcccgatccgcttgtccaggcttcc 511 |||||||||| |||||| | |||||||||||||||||| Sbjct: 18292384 atccccgccgagatccccagccgcttgtccaggcttcc 18292421
>gb|AY488136.1| Zea mays allene oxide cyclase (aoc) mRNA, complete cds Length = 717 Score = 396 bits (200), Expect = e-107 Identities = 360/408 (88%), Gaps = 4/408 (0%) Strand = Plus / Minus Query: 127 agttgttgaggcatgcgtgtggctcggtggccttggcggcgggcgttggctcgacggtgg 186 |||||| |||| ||||||| ||||||| |||| |||||||||| || ||||||||||||| Sbjct: 706 agttgtcgagggatgcgtgcggctcggcggccctggcggcgggggtgggctcgacggtgg 647 Query: 187 gggaaggcgggacgggcgtgcagagcagctcctttggcaggtccgggatgcccttgaggt 246 | || ||||||||||||||||||||||| ||| | |||||||||||||||||| ||||| Sbjct: 646 gcgacggcgggacgggcgtgcagagcaggtccctgggcaggtccgggatgccccggaggt 587 Query: 247 agaaagtgtagaagatcttgaaggggaagacgatctggttgagcttgacctgcccgtaga 306 |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 586 agaaggtgtagaagatcttgaaggggaagacgatctggttgagcttgacctggccgtaga 527 Query: 307 cgccctcgaagacgccggagcctcctgtgacggcgaggtaggactcctcgtaggtgaggt 366 |||||||||||||||||||||| || ||||| || ||||| |||||||||||||| |||| Sbjct: 526 cgccctcgaagacgccggagccgccggtgaccgccaggtacgactcctcgtaggtcaggt 467 Query: 367 agggcccctgcaggctgatgtggcccgtagtcgcccgaagtacatgctgtagatggccct 426 | || ||||||| ||||||| |||||||| |||||||| | ||||||||||| ||| Sbjct: 466 acgggccctgcaccgagatgtgg-ccgtagtc-tccgaagtagaagctgtagatgg-cct 410 Query: 427 cgtagcggtcgccgttgcgctccggcacgtgctggatcaggatgcagatccccgccgtga 486 ||||||||||||||||||| || || ||||||||||| || | |||||| ||||| |||| Sbjct: 409 cgtagcggtcgccgttgcggtcggggacgtgctggatgagcacgcagatgcccgcggtga 350 Query: 487 tcccgatccgcttgtccaggcttcccgttgtacaccttgttggtgaag 534 || | |||||||||||||| | |||||||||||||||||||||||| Sbjct: 349 cgcccagccgcttgtccaggc-tgccgttgtacaccttgttggtgaag 303
>gb|AY103942.1| Zea mays PCO144933 mRNA sequence Length = 1122 Score = 396 bits (200), Expect = e-107 Identities = 360/408 (88%), Gaps = 4/408 (0%) Strand = Plus / Minus Query: 127 agttgttgaggcatgcgtgtggctcggtggccttggcggcgggcgttggctcgacggtgg 186 |||||| |||| ||||||| ||||||| |||| |||||||||| || ||||||||||||| Sbjct: 787 agttgtcgagggatgcgtgcggctcggcggccctggcggcgggggtgggctcgacggtgg 728 Query: 187 gggaaggcgggacgggcgtgcagagcagctcctttggcaggtccgggatgcccttgaggt 246 | || ||||||||||||||||||||||| ||| | |||||||||||||||||| ||||| Sbjct: 727 gcgacggcgggacgggcgtgcagagcaggtccctgggcaggtccgggatgccccggaggt 668 Query: 247 agaaagtgtagaagatcttgaaggggaagacgatctggttgagcttgacctgcccgtaga 306 |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 667 agaaggtgtagaagatcttgaaggggaagacgatctggttgagcttgacctggccgtaga 608 Query: 307 cgccctcgaagacgccggagcctcctgtgacggcgaggtaggactcctcgtaggtgaggt 366 |||||||||||||||||||||| || ||||| || ||||| |||||||||||||| |||| Sbjct: 607 cgccctcgaagacgccggagccgccggtgaccgccaggtacgactcctcgtaggtcaggt 548 Query: 367 agggcccctgcaggctgatgtggcccgtagtcgcccgaagtacatgctgtagatggccct 426 | || ||||||| ||||||| |||||||| |||||||| | ||||||||||| ||| Sbjct: 547 acgggccctgcaccgagatgtgg-ccgtagtc-tccgaagtagaagctgtagatgg-cct 491 Query: 427 cgtagcggtcgccgttgcgctccggcacgtgctggatcaggatgcagatccccgccgtga 486 ||||||||||||||||||| || || ||||||||||| || | |||||| ||||| |||| Sbjct: 490 cgtagcggtcgccgttgcggtcggggacgtgctggatgagcacgcagatgcccgcggtga 431 Query: 487 tcccgatccgcttgtccaggcttcccgttgtacaccttgttggtgaag 534 || | |||||||||||||| | |||||||||||||||||||||||| Sbjct: 430 cgcccagccgcttgtccaggc-tgccgttgtacaccttgttggtgaag 384
>gb|BT016725.1| Zea mays clone Contig558 mRNA sequence Length = 1071 Score = 381 bits (192), Expect = e-102 Identities = 358/408 (87%), Gaps = 4/408 (0%) Strand = Plus / Minus Query: 127 agttgttgaggcatgcgtgtggctcggtggccttggcggcgggcgttggctcgacggtgg 186 |||||| |||| | ||||| ||||||| |||| |||||||||| || ||||||||||||| Sbjct: 761 agttgtcgagggaggcgtgcggctcggcggccctggcggcgggggtgggctcgacggtgg 702 Query: 187 gggaaggcgggacgggcgtgcagagcagctcctttggcaggtccgggatgcccttgaggt 246 | || ||||||||||||||||||||||| ||| |||||||||||||||| ||| ||||| Sbjct: 701 gcgacggcgggacgggcgtgcagagcaggtcccttggcaggtccgggattccccggaggt 642 Query: 247 agaaagtgtagaagatcttgaaggggaagacgatctggttgagcttgacctgcccgtaga 306 |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| | Sbjct: 641 agaaggtgtagaagatcttgaaggggaagacgatctggttgagcttgacctggccgtata 582 Query: 307 cgccctcgaagacgccggagcctcctgtgacggcgaggtaggactcctcgtaggtgaggt 366 |||||||||||||||||||||| || ||||| || ||||| |||||||||||||| |||| Sbjct: 581 cgccctcgaagacgccggagccgccggtgaccgccaggtacgactcctcgtaggtcaggt 522 Query: 367 agggcccctgcaggctgatgtggcccgtagtcgcccgaagtacatgctgtagatggccct 426 | || ||||||| ||||||| |||||||| |||||||| | ||||||||||| ||| Sbjct: 521 acgggccctgcaccgagatgtgg-ccgtagtc-tccgaagtagaagctgtagatgg-cct 465 Query: 427 cgtagcggtcgccgttgcgctccggcacgtgctggatcaggatgcagatccccgccgtga 486 ||||||||||||||||||| || || ||||||||||| || | |||||| ||||| |||| Sbjct: 464 cgtagcggtcgccgttgcggtcggggacgtgctggatgagcacgcagatgcccgcggtga 405 Query: 487 tcccgatccgcttgtccaggcttcccgttgtacaccttgttggtgaag 534 || | |||||||||||||| | |||||||||||||||||||||||| Sbjct: 404 cgcccagccgcttgtccaggc-tgccgttgtacaccttgttggtgaag 358
>gb|AY154776.1| Physcomitrella patens allene oxide cyclase (aoc) mRNA, complete cds Length = 958 Score = 93.7 bits (47), Expect = 6e-16 Identities = 132/159 (83%), Gaps = 1/159 (0%) Strand = Plus / Minus Query: 243 aggtagaaagtgtagaagatcttgaaggggaagacgatctggttgagcttgacctgcccg 302 |||||||| |||||||||| |||||||||||||| |||||||| ||||| |||| ||| Sbjct: 598 aggtagaacgtgtagaagagcttgaaggggaagatgatctggtgcagcttcgcctgaccg 539 Query: 303 tagacgccctcgaagacgccggagcctcctgtgacggcgaggtaggactcctcgtaggtg 362 ||| |||| |||||| || |||||||| |||| |||||||| || |||||||| ||| Sbjct: 538 tagcagcccgcgaagatccccgagcctcccgtgatcgcgaggtacgagtcctcgtatgtg 479 Query: 363 aggtagggcccctgcaggctgatgtggcccgtagtcgcc 401 | ||| |||||||| | | ||||||| ||||||||||| Sbjct: 478 atgtatggcccctgaacggagatgtgg-ccgtagtcgcc 441
>emb|AJ508993.1|PPA508993 Physcomitrella patens mRNA for allene oxide cyclase (aoc1 gene) Length = 779 Score = 93.7 bits (47), Expect = 6e-16 Identities = 132/159 (83%), Gaps = 1/159 (0%) Strand = Plus / Minus Query: 243 aggtagaaagtgtagaagatcttgaaggggaagacgatctggttgagcttgacctgcccg 302 |||||||| |||||||||| |||||||||||||| |||||||| ||||| |||| ||| Sbjct: 506 aggtagaacgtgtagaagagcttgaaggggaagatgatctggtgcagcttcgcctgaccg 447 Query: 303 tagacgccctcgaagacgccggagcctcctgtgacggcgaggtaggactcctcgtaggtg 362 ||| |||| |||||| || |||||||| |||| |||||||| || |||||||| ||| Sbjct: 446 tagcagcccgcgaagatccccgagcctcccgtgatcgcgaggtacgagtcctcgtatgtg 387 Query: 363 aggtagggcccctgcaggctgatgtggcccgtagtcgcc 401 | ||| |||||||| | | ||||||| ||||||||||| Sbjct: 386 atgtatggcccctgaacggagatgtgg-ccgtagtcgcc 349
>gb|DQ314585.1| Ipomoea nil chloroplast allene oxide cyclase precursor (AOC) mRNA, complete cds; nuclear gene for chloroplast product Length = 856 Score = 67.9 bits (34), Expect = 3e-08 Identities = 175/218 (80%), Gaps = 3/218 (1%) Strand = Plus / Minus Query: 222 ggcaggtccgggatgcccttgaggtagaaagtgtagaagatcttgaaggggaagacgatc 281 ||||| || ||||| ||||| | ||||||||||||||| | |||||| ||||| | || | Sbjct: 660 ggcagatcagggattcccttcaagtagaaagtgtagaacagcttgaacgggaaaatgagc 601 Query: 282 tggttgagcttgacctgcccgtagacgccctcgaagacgccggagcctcctgtgacggcg 341 || | |||||||||||| ||| |||| || ||||||| || || || || ||||| || Sbjct: 600 tgctggagcttgacctgaccggagactccttcgaagatcccagatccgccggtgaccgcc 541 Query: 342 aggtaggactcctcgtaggtgaggtagggcccctgcaggctgatgtggcccgtagtcgcc 401 | |||| ||||||||||||||||| | ||||| | | ||||||| ||||||||| | Sbjct: 540 aaataggtgtcctcgtaggtgaggtattgtccctgaacggcgatgtgg-ccgtagtcg-c 483 Query: 402 cgaagtacatgctgtagatggccctcgtagcggtcgcc 439 ||||||| | ||||||||| | ||||||| |||||||| Sbjct: 482 cgaagtagaagctgtagatcg-cctcgtaacggtcgcc 446
>gb|AF311437.2|AH010657S2 Comamonas testosteroni plasmid pTSA incP1beta region, partial sequence and transposon Tntsa, complete sequence Length = 38756 Score = 44.1 bits (22), Expect = 0.46 Identities = 22/22 (100%) Strand = Plus / Plus Query: 277 cgatctggttgagcttgacctg 298 |||||||||||||||||||||| Sbjct: 26867 cgatctggttgagcttgacctg 26888
>gb|AY687339.1| Humulus lupulus allene oxide cyclase C4 mRNA, complete cds Length = 1093 Score = 44.1 bits (22), Expect = 0.46 Identities = 58/70 (82%) Strand = Plus / Minus Query: 249 aaagtgtagaagatcttgaaggggaagacgatctggttgagcttgacctgcccgtagacg 308 ||||||||||| | |||||| ||||||| || ||||| ||||| ||||| ||| |||| Sbjct: 718 aaagtgtagaaaagcttgaaagggaagatgagctggtgcagcttcacctggccggagacc 659 Query: 309 ccctcgaaga 318 || ||||||| Sbjct: 658 ccttcgaaga 649
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 424 cctcgtagcggtcgccgttgcgctc 448 |||||||||||||||||| |||||| Sbjct: 910661 cctcgtagcggtcgccgtcgcgctc 910637
>gb|AY687338.1| Humulus lupulus allene oxide cyclase C1 mRNA, complete cds Length = 1099 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 249 aaagtgtagaagatcttgaaggggaaga 276 ||||||||||| | |||||||||||||| Sbjct: 716 aaagtgtagaaaagcttgaaggggaaga 689
>emb|CR457459.9| Zebrafish DNA sequence from clone DKEY-25P11 in linkage group 12, complete sequence Length = 206901 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 gagcagctcctttggcaggt 228 |||||||||||||||||||| Sbjct: 78596 gagcagctcctttggcaggt 78615
>gb|AY135641.1| Solanum tuberosum allene oxide cyclase mRNA, complete cds; nuclear gene for chloroplast product Length = 741 Score = 40.1 bits (20), Expect = 7.2 Identities = 47/56 (83%) Strand = Plus / Minus Query: 221 tggcaggtccgggatgcccttgaggtagaaagtgtagaagatcttgaaggggaaga 276 |||||| || ||||| ||||| | ||| ||||||||||| | |||||| ||||||| Sbjct: 642 tggcagatcggggatccccttcaagtaaaaagtgtagaatagcttgaaagggaaga 587
>gb|AC127308.3| Mus musculus BAC clone RP23-293B20 from 8, complete sequence Length = 211878 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 tgaggtagggcccctgcagg 380 |||||||||||||||||||| Sbjct: 76528 tgaggtagggcccctgcagg 76547
>emb|AL161901.18| Human DNA sequence from clone RP11-521H3 on chromosome 13 Contains a novel gene and a eukaryotic translation initiation factor 4A, variant 1 (EIF4A1) pseudogene, complete sequence Length = 150054 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 atgcccttgaggtagaaagt 253 |||||||||||||||||||| Sbjct: 139797 atgcccttgaggtagaaagt 139778
>gb|AE005907.1| Caulobacter crescentus CB15 section 233 of 359 of the complete genome Length = 8390 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 488 cccgatccgcttgtccaggc 507 |||||||||||||||||||| Sbjct: 4893 cccgatccgcttgtccaggc 4912 Score = 40.1 bits (20), Expect = 7.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 488 cccgatccgcttgtccaggc 507 |||||||||||||||||||| Sbjct: 2317 cccgatccgcttgtccaggc 2336
>dbj|AB037929.2| Bruguiera sexangula mang-1 mRNA for mangrin, complete cds Length = 1019 Score = 40.1 bits (20), Expect = 7.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 245 gtagaaagtgtagaagatcttgaa 268 ||||||||||||||||| |||||| Sbjct: 683 gtagaaagtgtagaagagcttgaa 660
>gb|AY644677.1| Humulus lupulus plastid allene oxide cyclase mRNA, complete cds; nuclear gene for plastid product Length = 768 Score = 40.1 bits (20), Expect = 7.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 249 aaagtgtagaagatcttgaaggggaaga 276 ||||||||||| | |||||||||||||| Sbjct: 632 aaagtgtagaaaagcttgaaggggaaga 605 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,484,707 Number of Sequences: 3902068 Number of extensions: 3484707 Number of successful extensions: 63687 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63518 Number of HSP's gapped (non-prelim): 139 length of query: 534 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 511 effective length of database: 17,143,297,704 effective search space: 8760225126744 effective search space used: 8760225126744 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)