>emb|CR293526.28| Mouse DNA sequence from clone RP23-9K14 on chromosome X, complete
              sequence
          Length = 211297

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 113    acaatcacaaaaacagaatgcca 135
              |||||||||||||||||||||||
Sbjct: 117442 acaatcacaaaaacagaatgcca 117420

>gb|AC122753.11| Mus musculus chromosome 5, clone RP24-492O4, complete sequence
          Length = 183819

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 31     actgaattatactgtaattctc 52
              ||||||||||||||||||||||
Sbjct: 117848 actgaattatactgtaattctc 117869

>gb|AC115116.6| Mus musculus BAC clone RP23-62I3 from chromosome 1, complete sequence
          Length = 231896

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 66     caagatagtgttcagagatacaaga 90
              ||||||||| |||||||||||||||
Sbjct: 149869 caagatagtcttcagagatacaaga 149845

>ref|XM_001003743.1| PREDICTED: Mus musculus killer cell lectin-like receptor, subfamily
           A, member 3, transcript variant 3 (Klra3), mRNA
          Length = 1050

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 184 gaaataatagataataatgca 204
           |||||||||||||||||||||
Sbjct: 475 gaaataatagataataatgca 455

>gb|AC123810.4| Mus musculus BAC clone RP24-178B17 from chromosome 8, complete sequence
          Length = 161521

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 115   aatcacaaaaacagaatgcca 135
             |||||||||||||||||||||
Sbjct: 10676 aatcacaaaaacagaatgcca 10696

>gb|AC161448.4| Mus musculus BAC clone RP24-149K9 from chromosome 6, complete sequence
          Length = 190414

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 184   gaaataatagataataatgca 204
             |||||||||||||||||||||
Sbjct: 65838 gaaataatagataataatgca 65858



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 184   gaaataatagataataatgca 204
             |||||||||||||||||||||
Sbjct: 34847 gaaataatagataataatgca 34867



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 184  gaaataatagataataatgca 204
            |||||||||||||||||||||
Sbjct: 2258 gaaataatagataataatgca 2278

>gb|AY388614.1| Homo sapiens polymerase (DNA directed), eta (POLH) gene, complete cds
          Length = 40997

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 109  gcacacaatcacaaaaacaga 129
            |||||||||||||||||||||
Sbjct: 2273 gcacacaatcacaaaaacaga 2253

>emb|AL355802.13| Human DNA sequence from clone RP3-337H4 on chromosome 6 Contains the 3'
             part of a novel gene, three novel genes, the gene for RNA
             polymerase I 40 kDa subunit (RPA40) (RPA39), the gene for
             exportin 5 (KIAA1291) (XPO5), a 40S ribosomal protein S2
             (RPS2) pseudogene, the 5' part of the POLH gene for DNA
             directed polymerase eta and four CpG islands, complete
             sequence
          Length = 105935

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 109   gcacacaatcacaaaaacaga 129
             |||||||||||||||||||||
Sbjct: 90042 gcacacaatcacaaaaacaga 90022

>gb|AC025105.10| Homo sapiens chromosome 18, clone RP11-695P1, complete sequence
          Length = 201027

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 112    cacaatcacaaaaacagaatg 132
              |||||||||||||||||||||
Sbjct: 191090 cacaatcacaaaaacagaatg 191110

>gb|AC090127.11| Mus musculus chromosome 6, clone RP23-128D23, complete sequence
          Length = 212404

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 184    gaaataatagataataatgca 204
              |||||||||||||||||||||
Sbjct: 203841 gaaataatagataataatgca 203821



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 184    gaaataatagataataatgca 204
              |||||||||||||||||||||
Sbjct: 134853 gaaataatagataataatgca 134833



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 184    gaaataatagataataatgca 204
              |||||||||||||||||||||
Sbjct: 101374 gaaataatagataataatgca 101354



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 184   gaaataatagataataatgca 204
             |||||||||||||||||||||
Sbjct: 68785 gaaataatagataataatgca 68765



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 184   gaaataatagataataatgca 204
             |||||||||||||||||||||
Sbjct: 37794 gaaataatagataataatgca 37774

>gb|AC087336.5| Mus musculus chromosome 6, clone RP23-446O7, complete sequence
          Length = 181773

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 184   gaaataatagataataatgca 204
             |||||||||||||||||||||
Sbjct: 88933 gaaataatagataataatgca 88953

>gb|AC116003.7| Homo sapiens chromosome 18, clone RP11-321M21, complete sequence
          Length = 189167

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 112   cacaatcacaaaaacagaatg 132
             |||||||||||||||||||||
Sbjct: 53666 cacaatcacaaaaacagaatg 53686

>gb|AC151476.1| Mus musculus BAC clone RP23-287H13 from 8, complete sequence
          Length = 155220

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 115   aatcacaaaaacagaatgcca 135
             |||||||||||||||||||||
Sbjct: 47010 aatcacaaaaacagaatgcca 47030

>gb|AC090563.17| Mus musculus chromosome 6, clone RP23-451F7, complete sequence
          Length = 199986

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 184    gaaataatagataataatgca 204
              |||||||||||||||||||||
Sbjct: 169298 gaaataatagataataatgca 169318

>gb|AC166342.3| Mus musculus BAC clone RP24-340A12 from chromosome 9, complete sequence
          Length = 174085

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   cacaaaaacagaatgccatc 137
             ||||||||||||||||||||
Sbjct: 90720 cacaaaaacagaatgccatc 90739

>gb|AC123030.4| Mus musculus BAC clone RP24-573I5 from chromosome 7, complete sequence
          Length = 173971

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    cacaaaaacagaatgccatc 137
              ||||||||||||||||||||
Sbjct: 129493 cacaaaaacagaatgccatc 129474

>gb|AC106750.3| Homo sapiens chromosome 5 clone RP11-164A4, complete sequence
          Length = 101224

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 195   taataatgcatagtccctcccagg 218
             |||| |||||||||||||||||||
Sbjct: 30214 taattatgcatagtccctcccagg 30191

>gb|AC154812.2| Mus musculus BAC clone RP24-532D12 from chromosome 9, complete
            sequence
          Length = 169822

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  cacaaaaacagaatgccatc 137
            ||||||||||||||||||||
Sbjct: 5744 cacaaaaacagaatgccatc 5763

>gb|AY708078.1| Mahatha ornatipes isolate 2120MahOrn 12S ribosomal RNA gene,
           partial sequence; tRNA-Val gene, complete sequence; and
           16S ribosomal RNA gene, partial sequence; mitochondrial
          Length = 1337

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 4   ttatacacaaggtacaaaac 23
           ||||||||||||||||||||
Sbjct: 305 ttatacacaaggtacaaaac 286

>gb|AC067863.19| Homo sapiens chromosome 15, clone RP11-335K5, complete sequence
          Length = 111700

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    aaacacaagtaactgaatta 39
             ||||||||||||||||||||
Sbjct: 47542 aaacacaagtaactgaatta 47561

>gb|AC154300.2| Mus musculus BAC clone RP23-390F4 from 12, complete sequence
          Length = 187014

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 117    tcacaaaaacagaatgccat 136
              ||||||||||||||||||||
Sbjct: 109171 tcacaaaaacagaatgccat 109190

>gb|AC111056.20| Mus musculus chromosome 3, clone RP24-537K9, complete sequence
          Length = 165443

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   cacatagactagcacacaca 163
             ||||||||||||||||||||
Sbjct: 67007 cacatagactagcacacaca 66988

>emb|Z98266.1|HSZ98266 Homo sapiens gene encoding plakophilin (exons 1-13)
          Length = 49999

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 516   ccggggaagagggagcccca 535
             ||||||||||||||||||||
Sbjct: 46714 ccggggaagagggagcccca 46695

>emb|AL772403.11| Mouse DNA sequence from clone RP23-458E2 on chromosome 4, complete
             sequence
          Length = 108612

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   atcacaaaaacagaatgcca 135
             ||||||||||||||||||||
Sbjct: 43106 atcacaaaaacagaatgcca 43087

>emb|AL929086.7| Zebrafish DNA sequence from clone CH211-130K1 in linkage group 3,
             complete sequence
          Length = 174740

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 118   cacaaaaacagaatgccatc 137
             ||||||||||||||||||||
Sbjct: 16070 cacaaaaacagaatgccatc 16089

>gb|AC168089.5| Mus musculus BAC clone RP23-299A14 from chromosome 6, complete sequence
          Length = 179444

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   cacaaaaacagaatgccatc 137
             ||||||||||||||||||||
Sbjct: 10972 cacaaaaacagaatgccatc 10953


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,339,865
Number of Sequences: 3902068
Number of extensions: 4339865
Number of successful extensions: 107232
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107136
Number of HSP's gapped (non-prelim): 96
length of query: 561
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 538
effective length of database: 17,143,297,704
effective search space: 9223094164752
effective search space used: 9223094164752
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)