ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags11m20 |
|---|---|
| Clone Library Name | barley_pub |
>SEC22_ARATH (Q94AU2) 25.3 kDa vesicle transport protein (AtSEC22)| Length = 218 Score = 177 bits (450), Expect = 2e-44 Identities = 88/106 (83%), Positives = 94/106 (88%) Frame = -3 Query: 623 FIKFDTYIQKTKKLYLDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSS 444 FIKFDT+IQKTKKLY DTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSS Sbjct: 113 FIKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSS 172 Query: 443 RLTSDTRIYADKAKDLNRQAFIRKYAPXXXXXXXXXILFWAKNKIW 306 RLTS++RIYADKAKDLNRQA IRK+AP +LFW KNK+W Sbjct: 173 RLTSESRIYADKAKDLNRQALIRKWAPVAIVFGVVFLLFWVKNKLW 218
>SEC22_YARLI (Q6C880) Protein transport protein SEC22| Length = 213 Score = 88.2 bits (217), Expect = 2e-17 Identities = 39/100 (39%), Positives = 66/100 (66%) Frame = -3 Query: 623 FIKFDTYIQKTKKLYLDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSS 444 F++FDT++QKTK++Y DTR N+ KLN EL +V ++MT+N++++L G LD +S++SS Sbjct: 110 FVEFDTFMQKTKRVYQDTRATHNLDKLNTELQDVTRVMTKNIEDLLHRGHSLDHMSDLSS 169 Query: 443 RLTSDTRIYADKAKDLNRQAFIRKYAPXXXXXXXXXILFW 324 L ++++ Y A+ +N +A IR+Y P + W Sbjct: 170 NLRTESKKYRRAAQRINWEAMIRQYIPFIGVGLIGLFMLW 209
>SEC22_KLULA (Q6CJA0) Protein transport protein SEC22| Length = 214 Score = 84.3 bits (207), Expect = 3e-16 Identities = 40/100 (40%), Positives = 61/100 (61%) Frame = -3 Query: 623 FIKFDTYIQKTKKLYLDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSS 444 F+ FD ++QKTKK+Y D R Q N+ +LN +L V QIMT+N++++L G+ LD++S+MS+ Sbjct: 110 FVSFDNFLQKTKKVYNDKRVQGNMDQLNQDLKGVKQIMTKNIEDLLYRGDSLDKMSDMSA 169 Query: 443 RLTSDTRIYADKAKDLNRQAFIRKYAPXXXXXXXXXILFW 324 L D + Y A+ +N I +YAP L W Sbjct: 170 SLRQDAKKYRASAQKINFDLLISQYAPIAIIAFFFVFLLW 209
>SEC22_ASHGO (Q74ZD2) Protein transport protein SEC22| Length = 214 Score = 83.2 bits (204), Expect = 6e-16 Identities = 38/100 (38%), Positives = 62/100 (62%) Frame = -3 Query: 623 FIKFDTYIQKTKKLYLDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSS 444 F+ FD ++QKTKK+Y D R Q N+ +LN +L V QIMT+N++++L G+ LD++S++S+ Sbjct: 110 FVSFDNFLQKTKKIYNDKRVQGNLDQLNSDLLGVKQIMTKNIEDLLYRGDSLDRMSDLSA 169 Query: 443 RLTSDTRIYADKAKDLNRQAFIRKYAPXXXXXXXXXILFW 324 L D++ Y A+ +N + +YAP L W Sbjct: 170 SLRQDSKKYRRSAQKINFDLLLSQYAPVALIGLFFLFLVW 209
>SEC22_YEAST (P22214) Protein transport protein SEC22 (Protein SLY2)| Length = 214 Score = 81.6 bits (200), Expect = 2e-15 Identities = 39/100 (39%), Positives = 60/100 (60%) Frame = -3 Query: 623 FIKFDTYIQKTKKLYLDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSS 444 F+ FD ++Q TKK Y D + Q N+ +LN EL V QIM++N++++L G+ LD++S+MSS Sbjct: 110 FVNFDNFLQMTKKSYSDKKVQDNLDQLNQELVGVKQIMSKNIEDLLYRGDSLDKMSDMSS 169 Query: 443 RLTSDTRIYADKAKDLNRQAFIRKYAPXXXXXXXXXILFW 324 L ++ Y A+ +N I +YAP LFW Sbjct: 170 SLKETSKRYRKSAQKINFDLLISQYAPIVIVAFFFVFLFW 209
>SC22B_PONPY (Q5RAI9) Vesicle trafficking protein SEC22b (SEC22 vesicle| trafficking protein-like 1) Length = 214 Score = 79.3 bits (194), Expect = 9e-15 Identities = 39/86 (45%), Positives = 58/86 (67%) Frame = -3 Query: 623 FIKFDTYIQKTKKLYLDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSS 444 FI+FDT+IQKTKKLY+D+R +RN+ +N EL +V +IM N++EVL GE L + ++ Sbjct: 111 FIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKAN 170 Query: 443 RLTSDTRIYADKAKDLNRQAFIRKYA 366 L+S ++ Y AK LN ++ K A Sbjct: 171 NLSSLSKKYRQDAKYLNMRSTYAKLA 196
>SC22B_MOUSE (O08547) Vesicle trafficking protein SEC22b (SEC22 vesicle| trafficking protein-like 1) Length = 214 Score = 79.3 bits (194), Expect = 9e-15 Identities = 39/86 (45%), Positives = 58/86 (67%) Frame = -3 Query: 623 FIKFDTYIQKTKKLYLDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSS 444 FI+FDT+IQKTKKLY+D+R +RN+ +N EL +V +IM N++EVL GE L + ++ Sbjct: 111 FIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKAN 170 Query: 443 RLTSDTRIYADKAKDLNRQAFIRKYA 366 L+S ++ Y AK LN ++ K A Sbjct: 171 NLSSLSKKYRQDAKYLNMRSTYAKLA 196
>SC22B_HUMAN (O75396) Vesicle trafficking protein SEC22b (SEC22 vesicle| trafficking protein-like 1) Length = 214 Score = 79.3 bits (194), Expect = 9e-15 Identities = 39/86 (45%), Positives = 58/86 (67%) Frame = -3 Query: 623 FIKFDTYIQKTKKLYLDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSS 444 FI+FDT+IQKTKKLY+D+R +RN+ +N EL +V +IM N++EVL GE L + ++ Sbjct: 111 FIEFDTFIQKTKKLYIDSRARRNLGSINTELQDVQRIMVANIEEVLQRGEALSALDSKAN 170 Query: 443 RLTSDTRIYADKAKDLNRQAFIRKYA 366 L+S ++ Y AK LN ++ K A Sbjct: 171 NLSSLSKKYRQDAKYLNMRSTYAKLA 196
>SEC22_CANGA (Q6FWT0) Protein transport protein SEC22| Length = 215 Score = 79.0 bits (193), Expect = 1e-14 Identities = 37/100 (37%), Positives = 60/100 (60%) Frame = -3 Query: 623 FIKFDTYIQKTKKLYLDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSS 444 F FDT++Q+TKK Y D + Q N+ +LN EL V QIM++N++++L G+ L+++ +MS+ Sbjct: 111 FASFDTFLQRTKKAYSDKKVQDNLDQLNQELVGVKQIMSKNIEDLLYRGDSLEKMDDMSN 170 Query: 443 RLTSDTRIYADKAKDLNRQAFIRKYAPXXXXXXXXXILFW 324 L ++ Y A+ +N I +YAP LFW Sbjct: 171 SLKISSKKYRKSAQKINFDLLISQYAPIVMVAFFFVFLFW 210
>SEC22_SCHPO (Q9Y7L0) Protein transport protein sec22| Length = 209 Score = 72.0 bits (175), Expect = 1e-12 Identities = 32/87 (36%), Positives = 60/87 (68%) Frame = -3 Query: 623 FIKFDTYIQKTKKLYLDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSS 444 F++FDT++QK+K++Y R N+ KLN EL +V ++MT+N++++L G+ L++++++SS Sbjct: 105 FVQFDTFMQKSKRVYNTPRANDNLDKLNTELKDVTRVMTKNIEDLLYRGDSLEKMADLSS 164 Query: 443 RLTSDTRIYADKAKDLNRQAFIRKYAP 363 L + Y A+ +N +A R+Y P Sbjct: 165 DLRYSSAKYKKAARRVNLEALWRQYGP 191
>VAMP4_MOUSE (O70480) Vesicle-associated membrane protein 4 (VAMP-4)| Length = 141 Score = 39.3 bits (90), Expect = 0.010 Identities = 17/60 (28%), Positives = 37/60 (61%) Frame = -3 Query: 554 IAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSDTRIYADKAKDLNRQAFIR 375 I + +++ EV +M N+ +V+ GE+LD++ + S L+ + +++++K L RQ + R Sbjct: 53 IKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWR 112
>VAMP4_HUMAN (O75379) Vesicle-associated membrane protein 4 (VAMP-4)| Length = 141 Score = 39.3 bits (90), Expect = 0.010 Identities = 17/60 (28%), Positives = 37/60 (61%) Frame = -3 Query: 554 IAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSDTRIYADKAKDLNRQAFIR 375 I + +++ EV +M N+ +V+ GE+LD++ + S L+ + +++++K L RQ + R Sbjct: 53 IKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWR 112
>ODPA_BACSU (P21881) Pyruvate dehydrogenase E1 component, alpha subunit (EC| 1.2.4.1) (S complex, 42 kDa subunit) (Vegetative protein 220) (VEG220) Length = 370 Score = 33.5 bits (75), Expect = 0.54 Identities = 25/95 (26%), Positives = 40/95 (42%) Frame = -3 Query: 596 KTKKLYLDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSDTRIY 417 KTKK +D++ Q + K E +++ V E DQ+ E+ R+ TR+ Sbjct: 3 KTKKAIVDSKKQFDAIKKQFETFQILNEKGEVVNEAAMPDLTDDQLKELMRRMVF-TRVL 61 Query: 416 ADKAKDLNRQAFIRKYAPXXXXXXXXXILFWAKNK 312 ++ LNRQ + YAP +A K Sbjct: 62 DQRSISLNRQGRLGFYAPTAGQEASQIATHFALEK 96
>SNB5_CAEEL (P34351) Synaptobrevin-like protein 5| Length = 102 Score = 32.0 bits (71), Expect = 1.6 Identities = 18/58 (31%), Positives = 29/58 (50%) Frame = -3 Query: 560 RNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSDTRIYADKAKDLNRQ 387 + I + EL V IM NVQ+++ KLD + E + RL + +Y A + R+ Sbjct: 16 QKIMRTRRELDSVKAIMKENVQKIMERQGKLDDLVERAQRLEEASDVYVKCAVKIKRE 73
>YZ07_AQUAE (O66402) Hypothetical protein aq_aa07| Length = 317 Score = 31.2 bits (69), Expect = 2.7 Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 13/89 (14%) Frame = -3 Query: 623 FIKFDTYIQKTKKLYLDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEK---LDQVSE 453 F +DTY +K K+++ + ++ I L E + Q + QEV + EK +++ E Sbjct: 35 FTGWDTYKKKMVKVHIPRKLEKEIFSLWKEHQKEKQQLKALEQEVKALLEKYKDAEKIKE 94 Query: 452 MSSRLTSDT----------RIYADKAKDL 396 + R+ ++ + Y DKAK+L Sbjct: 95 VLERIAQESITKTASSHALKTYTDKAKEL 123
>SYV_METJA (Q58413) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 878 Score = 31.2 bits (69), Expect = 2.7 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%) Frame = -2 Query: 369 CPRCHRDRGCNNTVLGQEQDMVIPPNKVAGLC*KTGERN----SGSRDAWM 229 CP+C N V+ +E+D+ I P K +C K G ++ + D WM Sbjct: 412 CPKC------GNVVVAKEEDLPIDPTKTGYVCDKCGNKDLIPETDVLDTWM 456
>VAMP8_RAT (Q9WUF4) Vesicle-associated membrane protein 8 (VAMP-8)| (Endobrevin) (EDB) Length = 100 Score = 30.8 bits (68), Expect = 3.5 Identities = 15/56 (26%), Positives = 29/56 (51%) Frame = -3 Query: 554 IAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSDTRIYADKAKDLNRQ 387 + L E+ V IMT+NV+ +L GE LD + + L + + + ++ + R+ Sbjct: 12 VRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTEDLEATSEHFKTTSQKVARK 67
>VAMP8_MOUSE (O70404) Vesicle-associated membrane protein 8 (VAMP-8)| (Endobrevin) (Edb) Length = 101 Score = 30.8 bits (68), Expect = 3.5 Identities = 15/56 (26%), Positives = 29/56 (51%) Frame = -3 Query: 554 IAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRLTSDTRIYADKAKDLNRQ 387 + L E+ V IMT+NV+ +L GE LD + + L + + + ++ + R+ Sbjct: 13 VRNLQSEVEGVKNIMTQNVERILSRGENLDHLRNKTEDLEATSEHFKTTSQKVARK 68
>CP17A_PIG (P19100) Cytochrome P450 17A1 (EC 1.14.99.9) (CYPXVII) (P450-C17)| (P450c17) (Steroid 17-alpha-hydroxylase/17,20 lyase) Length = 509 Score = 30.8 bits (68), Expect = 3.5 Identities = 14/26 (53%), Positives = 19/26 (73%) Frame = +3 Query: 243 LIQNFFLQSSNTGRLPCLVESPYLVL 320 L+Q F L+ + G+LPCLV +P LVL Sbjct: 459 LLQRFDLELPDDGQLPCLVGNPSLVL 484
>FAS_RAT (P12785) Fatty acid synthase (EC 2.3.1.85) [Includes:| [Acyl-carrier-protein] S-acetyltransferase (EC 2.3.1.38); [Acyl-carrier-protein] S-malonyltransferase (EC 2.3.1.39); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41); 3-oxoacyl-[acyl-ca Length = 2505 Score = 29.6 bits (65), Expect = 7.8 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 4/47 (8%) Frame = -3 Query: 527 EVHQIMTRNVQEVLGVGE----KLDQVSEMSSRLTSDTRIYADKAKD 399 EV QI+ R VL + E L ++ EMSS+ SDT + A K+K+ Sbjct: 2156 EVRQILEREHDLVLPIREVRQLTLRKLQEMSSKAGSDTELAAPKSKN 2202
>ARLY_SYNP7 (Q8GIS1) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)| (ASAL) Length = 466 Score = 29.6 bits (65), Expect = 7.8 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Frame = -3 Query: 527 EVHQIMTRNVQEVLG-VGEKLDQVSEMSSRLTSDTRIYADKAKDLNRQ 387 +VH + R + E+LG VG+KL + ++ +DTR+Y D RQ Sbjct: 88 DVHFAVERRLTELLGDVGKKLHTARSRNDQVGTDTRLYLRDRVDHIRQ 135
>ARLY_SYNP6 (Q5N1K1) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)| (ASAL) Length = 466 Score = 29.6 bits (65), Expect = 7.8 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Frame = -3 Query: 527 EVHQIMTRNVQEVLG-VGEKLDQVSEMSSRLTSDTRIYADKAKDLNRQ 387 +VH + R + E+LG VG+KL + ++ +DTR+Y D RQ Sbjct: 88 DVHFAVERRLTELLGDVGKKLHTARSRNDQVGTDTRLYLRDRVDHIRQ 135 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,254,917 Number of Sequences: 219361 Number of extensions: 1818634 Number of successful extensions: 5061 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 4907 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5059 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5881538857 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
