ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags11m18 |
|---|---|
| Clone Library Name | barley_pub |
>PTRB_MORLA (Q59536) Protease 2 (EC 3.4.21.83) (Protease II) (Oligopeptidase B)| Length = 690 Score = 123 bits (309), Expect = 4e-28 Identities = 59/100 (59%), Positives = 71/100 (71%) Frame = -2 Query: 651 EWGDPRXXXXXXXXXXXSPVDNVTAQDYPHILVTAGLNDPRVMYSEPAKFVAKLRELKTD 472 EWGDPR SP DNV A+DYPH+ +T G+NDPRV Y EPAK+VA+LR +KTD Sbjct: 581 EWGDPRKQEDYFYMKSYSPYDNVEAKDYPHMYITTGINDPRVGYFEPAKWVARLRAVKTD 640 Query: 471 NNLLLFKCELGAGHFSKSGRFEKLREDAFTYAFILKALGM 352 NN L+ K +GAGHF KSGRF L+E A +YAFIL LG+ Sbjct: 641 NNTLVMKTNMGAGHFGKSGRFNHLKEAAESYAFILDKLGV 680
>PTRB_ECOLI (P24555) Protease 2 (EC 3.4.21.83) (Protease II) (Oligopeptidase B)| Length = 686 Score = 105 bits (261), Expect = 2e-22 Identities = 56/107 (52%), Positives = 70/107 (65%), Gaps = 1/107 (0%) Frame = -2 Query: 651 EWGDPRXXXXXXXXXXXSPVDNVTAQDYPHILVTAGLNDPRVMYSEPAKFVAKLRELKTD 472 EWG+P+ SP DNVTAQ YPH+LVT GL+D +V Y EPAK+VAKLRELKTD Sbjct: 579 EWGNPQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTD 638 Query: 471 NNLLLFKCELGAGHFSKSGRFEKLREDAFTYAFILK-ALGMTPPTAA 334 ++LLL ++ +GH KSGRF+ A YAF++ A G P T A Sbjct: 639 DHLLLLCTDMDSGHGGKSGRFKSYEGVAMEYAFLVALAQGTLPATPA 685
>Y4SO_RHISN (P55656) Probable peptidase y4sO (EC 3.4.21.-)| Length = 705 Score = 51.2 bits (121), Expect = 3e-06 Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 2/103 (1%) Frame = -2 Query: 651 EWGDPRXXXXXXXXXXXSPVDNVTA-QDYPHILVTAGLNDPRVMYSEPAKFVAKLRELKT 475 E+GDP P N+T + YP + A L+D +V+Y +PA++VA+ R Sbjct: 601 EYGDPHLANDYQYLRSYDPYYNLTPDRRYPPTYIDAALHDSQVLYYQPARYVAQRRSKAV 660 Query: 474 DNNL-LLFKCELGAGHFSKSGRFEKLREDAFTYAFILKALGMT 349 D + L+F+ + GH S E AF A+IL LG + Sbjct: 661 DRDPDLIFRTRMIGGHMGVSHGPGVAEEAAFRMAWILHRLGQS 703
>Y4QF_RHISN (P55627) Probable peptidase y4qF (EC 3.4.21.-)| Length = 754 Score = 45.4 bits (106), Expect = 1e-04 Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 2/105 (1%) Frame = -2 Query: 651 EWGDPRXXXXXXXXXXXSPVDNVTAQ-DYPHILVTAGLNDPRVMYSEPAKFVAKLRELKT 475 E+GDP+ P N++ + P V A L+D +V+Y +PA++VA+ R T Sbjct: 632 EYGDPQDAYEYRYLRSYDPYYNLSPERSLPPTYVDAALDDGQVIYYQPARYVAQRRSCAT 691 Query: 474 DNNL-LLFKCELGAGHFSKSGRFEKLREDAFTYAFILKALGMTPP 343 D + L+F+ + GH S + AF A++L L P Sbjct: 692 DRDPDLVFRIRMVGGHSGPSHGPGIAEQAAFRMAWVLDQLRSHAP 736
>COOS1_CARHZ (P59934) Carbon monoxide dehydrogenase 1 (EC 1.2.99.2) (CODH 1)| Length = 635 Score = 36.6 bits (83), Expect = 0.066 Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 3/108 (2%) Frame = -2 Query: 594 VDNVTAQDYPHILVTAGLNDPRVMYSEPAKFVAKLRELKTDNNLLLFKCELGAGHFSKSG 415 +DN+ + I + AG N+P+ ++ F+ +EL NN+L+ GAG F+K+G Sbjct: 430 IDNIINGNIQGIALFAGCNNPKAIHDN--SFITIAKEL-AKNNVLMLATGCGAGAFAKNG 486 Query: 414 RFEKLREDAF---TYAFILKALGMTPPTAASSL*RVHIFIVAVSNCVD 280 + +A+ + +L ALG A+ L ++ + +CVD Sbjct: 487 LMTQEATEAYAGESLKAVLTALG-----KAAGLNGPLPLVLHMGSCVD 529
>PPCE_AERHY (Q06903) Prolyl endopeptidase (EC 3.4.21.26) (Post-proline cleaving| enzyme) (PE) Length = 689 Score = 36.6 bits (83), Expect = 0.066 Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Frame = -2 Query: 597 PVDNVTAQ-DYPHILVTAGLNDPRVMYSEPAKFVAKLRELKTDNNLLLFKCELGAGHFSK 421 P+ +V A YP LVT +D RV+ + KF A L+ + L + E AGH + Sbjct: 600 PLHSVRAGVSYPSTLVTTADHDDRVVPAHSFKFAATLQADDAGPHPQLIRIETNAGHGAG 659 Query: 420 SGRFEKLREDAFTYAFILKALG 355 + + + + A YAF L +G Sbjct: 660 TPVAKLIEQSADIYAFTLFEMG 681
>PPCE_BOVIN (Q9XTA2) Prolyl endopeptidase (EC 3.4.21.26) (Post-proline cleaving| enzyme) (PE) Length = 710 Score = 35.8 bits (81), Expect = 0.11 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 4/77 (5%) Frame = -2 Query: 570 YPHILVTAGLNDPRVMYSEPAKFVAKLREL----KTDNNLLLFKCELGAGHFSKSGRFEK 403 YP +L+ +D RV+ KF+A L+ L + NN LL + AGH + + Sbjct: 630 YPSMLLLTADHDDRVVPLHSPKFIATLQHLVGRSRKQNNPLLIHVDTKAGHGAGKPTAKV 689 Query: 402 LREDAFTYAFILKALGM 352 + E + +AFI + L + Sbjct: 690 IEEVSDMFAFIARCLNI 706
>PPCE_PIG (P23687) Prolyl endopeptidase (EC 3.4.21.26) (Post-proline cleaving| enzyme) (PE) Length = 710 Score = 34.3 bits (77), Expect = 0.33 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 4/77 (5%) Frame = -2 Query: 570 YPHILVTAGLNDPRVMYSEPAKFVAKLREL----KTDNNLLLFKCELGAGHFSKSGRFEK 403 YP +L+ +D RV+ KF+A L+ + + NN LL + AGH + + Sbjct: 630 YPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQNNPLLIHVDTKAGHGAGKPTAKV 689 Query: 402 LREDAFTYAFILKALGM 352 + E + +AFI + L + Sbjct: 690 IEEVSDMFAFIARCLNI 706
>PPCE_MOUSE (Q9QUR6) Prolyl endopeptidase (EC 3.4.21.26) (Post-proline cleaving| enzyme) (PE) Length = 710 Score = 32.3 bits (72), Expect = 1.3 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 4/77 (5%) Frame = -2 Query: 570 YPHILVTAGLNDPRVMYSEPAKFVAKLREL----KTDNNLLLFKCELGAGHFSKSGRFEK 403 YP +L+ +D RV+ KF+A L+ + + +N LL + AGH + + Sbjct: 630 YPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQSNPLLIHVDTKAGHGAGKPTAKV 689 Query: 402 LREDAFTYAFILKALGM 352 + E + +AFI + L + Sbjct: 690 IEEVSDMFAFIARCLNI 706
>PPCE_HUMAN (P48147) Prolyl endopeptidase (EC 3.4.21.26) (Post-proline cleaving| enzyme) (PE) Length = 710 Score = 32.3 bits (72), Expect = 1.3 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 4/77 (5%) Frame = -2 Query: 570 YPHILVTAGLNDPRVMYSEPAKFVAKLREL----KTDNNLLLFKCELGAGHFSKSGRFEK 403 YP +L+ +D RV+ KF+A L+ + + +N LL + AGH + + Sbjct: 630 YPSMLLLTADHDDRVVPLHSLKFIATLQYIVGRSRKQSNPLLIHVDTKAGHGAGKPTAKV 689 Query: 402 LREDAFTYAFILKALGM 352 + E + +AFI + L + Sbjct: 690 IEEVSDMFAFIARCLNV 706
>GIDA_XYLFT (Q87DB3) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 629 Score = 32.0 bits (71), Expect = 1.6 Identities = 22/74 (29%), Positives = 33/74 (44%) Frame = -2 Query: 558 LVTAGLNDPRVMYSEPAKFVAKLRELKTDNNLLLFKCELGAGHFSKSGRFEKLREDAFTY 379 L+T G N+P M++ A++ +LRE D L +LG ++ F +E Sbjct: 418 LITHGTNEPYRMFTSRAEYRLQLREDNADARLTAIGRDLGLVDDARWAHFNAKQEAVARE 477 Query: 378 AFILKALGMTPPTA 337 L AL TP A Sbjct: 478 CGRLSALWATPGNA 491
>GIDA_BURPS (Q63PG8) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 657 Score = 30.8 bits (68), Expect = 3.6 Identities = 21/73 (28%), Positives = 33/73 (45%) Frame = -2 Query: 558 LVTAGLNDPRVMYSEPAKFVAKLRELKTDNNLLLFKCELGAGHFSKSGRFEKLREDAFTY 379 LVT G+++P M++ A++ LRE D L ELG + F + R+ Sbjct: 418 LVTRGISEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFNRKRDAVSRE 477 Query: 378 AFILKALGMTPPT 340 L+ +TP T Sbjct: 478 TERLRTTWVTPKT 490
>GIDA2_FUSNN (Q8RI88) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA 2 (Glucose-inhibited division protein A 2) Length = 633 Score = 30.8 bits (68), Expect = 3.6 Identities = 22/71 (30%), Positives = 32/71 (45%) Frame = -2 Query: 558 LVTAGLNDPRVMYSEPAKFVAKLRELKTDNNLLLFKCELGAGHFSKSGRFEKLREDAFTY 379 LV+ G N+P M++ +++ LRE D L ELG + R EK R+D Sbjct: 421 LVSKGTNEPYRMFTARSEYRLYLREDNADLRLTKLGYELGLVPEEEYQRVEKKRKDVKII 480 Query: 378 AFILKALGMTP 346 IL + P Sbjct: 481 TEILAKTNVGP 491
>GIDA_SHIFL (Q83PJ6) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 629 Score = 30.4 bits (67), Expect = 4.8 Identities = 23/83 (27%), Positives = 36/83 (43%) Frame = -2 Query: 558 LVTAGLNDPRVMYSEPAKFVAKLRELKTDNNLLLFKCELGAGHFSKSGRFEKLREDAFTY 379 L T G +P M++ A++ LRE D L ELG + RF + E+ Sbjct: 417 LCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERE 476 Query: 378 AFILKALGMTPPTAASSL*RVHI 310 LK+ +TP A++ H+ Sbjct: 477 RQRLKSTWVTPSAEAAAEVNAHL 499
>GIDA_ECOLI (P0A6U3) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 629 Score = 30.4 bits (67), Expect = 4.8 Identities = 23/83 (27%), Positives = 36/83 (43%) Frame = -2 Query: 558 LVTAGLNDPRVMYSEPAKFVAKLRELKTDNNLLLFKCELGAGHFSKSGRFEKLREDAFTY 379 L T G +P M++ A++ LRE D L ELG + RF + E+ Sbjct: 417 LCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERE 476 Query: 378 AFILKALGMTPPTAASSL*RVHI 310 LK+ +TP A++ H+ Sbjct: 477 RQRLKSTWVTPSAEAAAEVNAHL 499
>GIDA_ECOL6 (P0A6U4) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 629 Score = 30.4 bits (67), Expect = 4.8 Identities = 23/83 (27%), Positives = 36/83 (43%) Frame = -2 Query: 558 LVTAGLNDPRVMYSEPAKFVAKLRELKTDNNLLLFKCELGAGHFSKSGRFEKLREDAFTY 379 L T G +P M++ A++ LRE D L ELG + RF + E+ Sbjct: 417 LCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERE 476 Query: 378 AFILKALGMTPPTAASSL*RVHI 310 LK+ +TP A++ H+ Sbjct: 477 RQRLKSTWVTPSAEAAAEVNAHL 499
>GIDA_ECO57 (Q8XAY0) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 629 Score = 30.4 bits (67), Expect = 4.8 Identities = 23/83 (27%), Positives = 36/83 (43%) Frame = -2 Query: 558 LVTAGLNDPRVMYSEPAKFVAKLRELKTDNNLLLFKCELGAGHFSKSGRFEKLREDAFTY 379 L T G +P M++ A++ LRE D L ELG + RF + E+ Sbjct: 417 LCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKLENIERE 476 Query: 378 AFILKALGMTPPTAASSL*RVHI 310 LK+ +TP A++ H+ Sbjct: 477 RQRLKSTWVTPSAEAAAEVNAHL 499
>GIDA_BURMA (Q62FS8) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 657 Score = 30.4 bits (67), Expect = 4.8 Identities = 21/73 (28%), Positives = 33/73 (45%) Frame = -2 Query: 558 LVTAGLNDPRVMYSEPAKFVAKLRELKTDNNLLLFKCELGAGHFSKSGRFEKLREDAFTY 379 LVT G+++P M++ A++ LRE D L ELG + F + R+ Sbjct: 418 LVTRGVSEPYRMFTSRAEYRLSLREDNADMRLTEIGRELGVVDDVRWDAFNRKRDAVSRE 477 Query: 378 AFILKALGMTPPT 340 L+ +TP T Sbjct: 478 TERLRTTWVTPKT 490
>GIDA_XYLFA (Q9PBN4) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 629 Score = 30.0 bits (66), Expect = 6.2 Identities = 21/74 (28%), Positives = 32/74 (43%) Frame = -2 Query: 558 LVTAGLNDPRVMYSEPAKFVAKLRELKTDNNLLLFKCELGAGHFSKSGRFEKLREDAFTY 379 L+T G N+P M++ A++ +LRE D L +LG ++ F +E Sbjct: 418 LITHGTNEPYRMFTSRAEYRLQLREDNADARLTAIGRDLGLIDDARWAHFNAKQEAVARE 477 Query: 378 AFILKALGMTPPTA 337 L A TP A Sbjct: 478 CERLSAFWATPGNA 491
>GIDA_XANOR (Q5H6D9) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 634 Score = 30.0 bits (66), Expect = 6.2 Identities = 22/74 (29%), Positives = 33/74 (44%) Frame = -2 Query: 558 LVTAGLNDPRVMYSEPAKFVAKLRELKTDNNLLLFKCELGAGHFSKSGRFEKLREDAFTY 379 L+T G +P M++ A++ +LRE D L E+G ++ RF +E Sbjct: 423 LITHGTTEPYRMFTSRAEYRLQLREDNADARLTGAGREMGLVDDARWARFSAKQEAVQRE 482 Query: 378 AFILKALGMTPPTA 337 L AL TP A Sbjct: 483 TARLSALWATPGNA 496
>STAB1_HUMAN (Q9NY15) Stabilin-1 precursor (FEEL-1 protein) (MS-1 antigen)| Length = 2570 Score = 30.0 bits (66), Expect = 6.2 Identities = 15/32 (46%), Positives = 22/32 (68%) Frame = +1 Query: 391 VLSQLLKPPRLGEVPGAELTLEQQEVVVCLQL 486 +LSQ+L PPR G+VPG + L+Q ++V L Sbjct: 1113 ILSQVLLPPR-GDVPGGQGLLQQLDLVPAFSL 1143
>DDL_ENTHR (Q47827) D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine| synthetase) (D-Ala-D-Ala ligase) Length = 358 Score = 30.0 bits (66), Expect = 6.2 Identities = 12/48 (25%), Positives = 24/48 (50%) Frame = +1 Query: 343 WRSHPQRLEDECVGEGVLSQLLKPPRLGEVPGAELTLEQQEVVVCLQL 486 W+ +P+++ D+C G + +KP +G G ++E+ L L Sbjct: 157 WKENPKKIFDQCEGSLLYPMFVKPANMGSSVGISKAENREELQNALAL 204
>GIDA_RHIME (Q92KW2) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 623 Score = 29.6 bits (65), Expect = 8.1 Identities = 19/71 (26%), Positives = 33/71 (46%) Frame = -2 Query: 558 LVTAGLNDPRVMYSEPAKFVAKLRELKTDNNLLLFKCELGAGHFSKSGRFEKLREDAFTY 379 L + G+ +P M++ A++ LR D L LG ++ RFE + T Sbjct: 413 LTSRGITEPYRMFTSRAEYRLSLRADNADMRLTPAGITLGCVGDARRQRFEAWKHSYETG 472 Query: 378 AFILKALGMTP 346 +L++L +TP Sbjct: 473 RTLLQSLSVTP 483 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,857,693 Number of Sequences: 219361 Number of extensions: 1838970 Number of successful extensions: 4572 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 4471 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4566 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6143359464 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
