>gb|AC084386.2| Mus musculus BAC clone RP23-61O2 from 17, complete sequence
          Length = 209523

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 231   aagtctctctgctcctcgagcat 253
             |||||||||||||||||||||||
Sbjct: 64103 aagtctctctgctcctcgagcat 64081

>gb|AC155160.4| Mus musculus BAC clone RP24-510B6 from chromosome 17, complete sequence
          Length = 208376

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 231    aagtctctctgctcctcgagcat 253
              |||||||||||||||||||||||
Sbjct: 120702 aagtctctctgctcctcgagcat 120724

>dbj|AP006380.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT01O24, TM0227,
             complete sequence
          Length = 84166

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 36    cgacttgcatcaaataaaataat 58
             |||||||||||||||||||||||
Sbjct: 72812 cgacttgcatcaaataaaataat 72790

>ref|XM_445281.1| Candida glabrata CBS138, CAGL0C02409g partial mRNA
          Length = 2973

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 153  tcatctttaaatctcggatcgtcctcatca 182
            ||||| ||||| ||||||||||||||||||
Sbjct: 1475 tcatcattaaagctcggatcgtcctcatca 1446

>emb|CR380949.1| Candida glabrata strain CBS138 chromosome C complete sequence
          Length = 558804

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 153    tcatctttaaatctcggatcgtcctcatca 182
              ||||| ||||| ||||||||||||||||||
Sbjct: 242123 tcatcattaaagctcggatcgtcctcatca 242094

>ref|XM_380214.1| Gibberella zeae PH-1 chromosome 1 predicted protein (FG00038.1)
           partial mRNA
          Length = 558

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 226 gcttaaagtctctctgctcct 246
           |||||||||||||||||||||
Sbjct: 370 gcttaaagtctctctgctcct 350

>gb|AC124562.4| Mus musculus BAC clone RP23-175B1 from 13, complete sequence
          Length = 198817

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 383    gaggacacttctcacatcata 403
              |||||||||||||||||||||
Sbjct: 197744 gaggacacttctcacatcata 197724

>gb|AC121808.2| Mus musculus BAC clone RP23-449M23 from 13, complete sequence
          Length = 194020

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 383   gaggacacttctcacatcata 403
             |||||||||||||||||||||
Sbjct: 33193 gaggacacttctcacatcata 33173

>emb|AL773507.7| Mouse DNA sequence from clone RP23-322E14 on chromosome 4 Contains a
             phospholipase A2, group XIIA (Pla2g12) pseudogene,
             complete sequence
          Length = 200646

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 217   ttagttggtgcttaaagtctctctg 241
             |||||||||| ||||||||||||||
Sbjct: 79361 ttagttggtggttaaagtctctctg 79337

>gb|AC087069.3| Homo sapiens chromosome 7 clone RP11-7P19, complete sequence
          Length = 159620

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 385    ggacacttctcacatcatatt 405
              |||||||||||||||||||||
Sbjct: 112222 ggacacttctcacatcatatt 112202

>gb|AC131945.1| Homo sapiens BAC clone RP11-5K24 from 4, complete sequence
          Length = 135190

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 47    aaataaaataataattnaatttag 70
             |||||||||||||||| |||||||
Sbjct: 12786 aaataaaataataatttaatttag 12763

>gb|AC140397.2| Mus musculus BAC clone RP23-162E7 from chromosome 13, complete sequence
          Length = 233829

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 383    gaggacacttctcacatcata 403
              |||||||||||||||||||||
Sbjct: 208568 gaggacacttctcacatcata 208588

>gb|AY742293.1| Malus x domestica 14-3-3 family protein mRNA, complete cds
          Length = 1090

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 274 tgtacatggccaagttggcc 293
           ||||||||||||||||||||
Sbjct: 110 tgtacatggccaagttggcc 129

>gb|AC115863.17| Mus musculus chromosome 9, clone RP24-295J1, complete sequence
          Length = 174095

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    ttgtcttgacaaccaagaag 32
             ||||||||||||||||||||
Sbjct: 18731 ttgtcttgacaaccaagaag 18750

>gb|AC163615.5| Mus musculus BAC clone RP23-104L12 from chromosome 8, complete sequence
          Length = 222950

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 12     cttgtcttgacaaccaagaa 31
              ||||||||||||||||||||
Sbjct: 107515 cttgtcttgacaaccaagaa 107496

>emb|Z83117.1|CEM04C7 Caenorhabditis elegans Cosmid M04C7, complete sequence
          Length = 18964

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    catcaaataaaataataatt 62
             ||||||||||||||||||||
Sbjct: 12738 catcaaataaaataataatt 12757

>emb|AL357569.12| Human DNA sequence from clone RP13-137O14 on chromosome X, complete
            sequence
          Length = 92522

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 43   catcaaataaaataataatt 62
            ||||||||||||||||||||
Sbjct: 9092 catcaaataaaataataatt 9073

>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome
          Length = 2799802

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 43      catcaaataaaataataatt 62
               ||||||||||||||||||||
Sbjct: 1037671 catcaaataaaataataatt 1037652

>emb|AL033534.1|SPBC215 S.pombe chromosome II cosmid c215
          Length = 37777

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 47   aaataaaataataattnaattta 69
            |||||||||||||||| ||||||
Sbjct: 9181 aaataaaataataattgaattta 9203

>emb|CR931736.1| Medicago truncatula chromosome 5 clone mte1-84f20, COMPLETE SEQUENCE
          Length = 149149

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    ttgcatcaaataaaataata 59
             ||||||||||||||||||||
Sbjct: 30455 ttgcatcaaataaaataata 30436

>gb|AC114912.3| Homo sapiens BAC clone RP11-552M14 from 4, complete sequence
          Length = 95468

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 46    caaataaaataataattnaattt 68
             ||||||||||||||||| |||||
Sbjct: 16513 caaataaaataataatttaattt 16491

>gb|AC079073.7| Homo sapiens chromosome 11, clone RP11-72A10, complete sequence
          Length = 173119

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 262   tggtgtgctcgttgtacatg 281
             ||||||||||||||||||||
Sbjct: 56402 tggtgtgctcgttgtacatg 56421

>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome
          Length = 2878529

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 43      catcaaataaaataataatt 62
               ||||||||||||||||||||
Sbjct: 1085369 catcaaataaaataataatt 1085350

>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome
          Length = 2809422

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 43      catcaaataaaataataatt 62
               ||||||||||||||||||||
Sbjct: 1048645 catcaaataaaataataatt 1048626

>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome
          Length = 2821361

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 43     catcaaataaaataataatt 62
              ||||||||||||||||||||
Sbjct: 945034 catcaaataaaataataatt 945015

>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome
          Length = 2872769

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 43      catcaaataaaataataatt 62
               ||||||||||||||||||||
Sbjct: 1025171 catcaaataaaataataatt 1025152

>dbj|AB125313.1| Nannochloris bacillaris NbrbcS1-2, GAMM1, Mut2 genes for
             ribulose-1,5-bisphosphate carboxyase/oxygenase small
             subunit, GAMM1 protein-like protein, DNA mismatch repair
             protein Mut2-like protein and genes for trypsin,
             peptidyl-prolyl cis-trans isomerase, complete cds
          Length = 12642

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 131   tccagcagagctggtggtgc 150
             ||||||||||||||||||||
Sbjct: 12334 tccagcagagctggtggtgc 12353

>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2
          Length = 2820462

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 43      catcaaataaaataataatt 62
               ||||||||||||||||||||
Sbjct: 1008948 catcaaataaaataataatt 1008929

>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome
          Length = 2814816

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 43      catcaaataaaataataatt 62
               ||||||||||||||||||||
Sbjct: 1009041 catcaaataaaataataatt 1009022

>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome
          Length = 2902619

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 43      catcaaataaaataataatt 62
               ||||||||||||||||||||
Sbjct: 1049565 catcaaataaaataataatt 1049546

>gb|AC131660.4| Mus musculus BAC clone RP23-241P13 from 9, complete sequence
          Length = 220247

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 13     ttgtcttgacaaccaagaag 32
              ||||||||||||||||||||
Sbjct: 162610 ttgtcttgacaaccaagaag 162629

>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome
          Length = 2742531

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 43     catcaaataaaataataatt 62
              ||||||||||||||||||||
Sbjct: 975840 catcaaataaaataataatt 975821


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,945,653
Number of Sequences: 3902068
Number of extensions: 4945653
Number of successful extensions: 107312
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107120
Number of HSP's gapped (non-prelim): 192
length of query: 570
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 547
effective length of database: 17,143,297,704
effective search space: 9377383844088
effective search space used: 9377383844088
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)