ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags11m11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009409.1| Triticum aestivum clone wlm96.pk060.l13:fis, full insert mRNA sequence Length = 1677 Score = 488 bits (246), Expect = e-135 Identities = 301/326 (92%) Strand = Plus / Minus Query: 1 tcttttgcgcccacgactagaatatagttgaattgggctaactgagcctcccgcaccttc 60 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1345 tcttttgcgccgacgactagaatatagttgaattgggctaactgagcctcccgcaccttc 1286 Query: 61 ttttgaattgttctatcagtcatgtcaatgtcaacatgaaaaccagctgcgtgtatctga 120 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1285 ttttgaattgttctatcagtcatgtcaatgtcaacatgaaaaccagctgcacgtatctga 1226 Query: 121 gcatgaacctcttttgcatatgctagtgaattggaagatacacagcaaacaatggcttgt 180 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct: 1225 gcatgaacctcttttgcatatgttagtgaattggcagatacacagcaaacaatggcttgt 1166 Query: 181 cgggggcttaaccacaacggncatttaccattatagngctccaaaagaatggcaaacatn 240 |||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| Sbjct: 1165 cgggggcttaaccacaacggccatttaccattatagtgctccaaaagaatggcaaacatc 1106 Query: 241 ctttcaactgatcctannattgncctgngtatnattacaggcctntnaagcttggnttna 300 |||||||||||||||| |||| |||| |||| ||||||||||| | |||||||| || | Sbjct: 1105 ctttcaactgatcctagtattgccctgtgtatcattacaggcctctcaagcttggcttca 1046 Query: 301 tnctntgnanaanaannnaacttgaa 326 | || || | || || |||||||| Sbjct: 1045 tcctctgcagaataagtcaacttgaa 1020
>ref|XM_481363.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2474 Score = 161 bits (81), Expect = 2e-36 Identities = 230/283 (81%) Strand = Plus / Minus Query: 13 acgactagaatatagttgaattgggctaactgagcctcccgcaccttcttttgaattgtt 72 ||||| ||||| ||||||||||||||||| ||||||||||| |||||||| || ||||| Sbjct: 2164 acgacaagaatgtagttgaattgggctaattgagcctcccgtaccttcttctgtattgtc 2105 Query: 73 ctatcagtcatgtcaatgtcaacatgaaaaccagctgcgtgtatctgagcatgaacctct 132 || || ||| || ||| | ||||||||||||||| | |||||| |||| | |||| | Sbjct: 2104 ctgtctgtctcatcgatggctacatgaaaaccagcttcatgtatcctagcacggacctgt 2045 Query: 133 tttgcatatgctagtgaattggaagatacacagcaaacaatggcttgtcgggggcttaac 192 || || ||| | | |||||||||||||| |||||||||||||||| || || || ||| Sbjct: 2044 ttagcgtattccactgaattggaagatatggagcaaacaatggcttggcgaggactcaac 1985 Query: 193 cacaacggncatttaccattatagngctccaaaagaatggcaaacatnctttcaactgat 252 ||||| || ||||||||||| || ||||||||||||| |||||||| |||||||| || Sbjct: 1984 cacaagggccatttaccattgtaatgctccaaaagaatagcaaacatcctttcaacagaa 1925 Query: 253 cctannattgncctgngtatnattacaggcctntnaagcttgg 295 |||| |||| |||| | || || |||||||| | ||| |||| Sbjct: 1924 cctaggattgccctgtgaatcatcacaggcctctcaagtttgg 1882
>dbj|AK070378.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052L01, full insert sequence Length = 2475 Score = 161 bits (81), Expect = 2e-36 Identities = 230/283 (81%) Strand = Plus / Minus Query: 13 acgactagaatatagttgaattgggctaactgagcctcccgcaccttcttttgaattgtt 72 ||||| ||||| ||||||||||||||||| ||||||||||| |||||||| || ||||| Sbjct: 2164 acgacaagaatgtagttgaattgggctaattgagcctcccgtaccttcttctgtattgtc 2105 Query: 73 ctatcagtcatgtcaatgtcaacatgaaaaccagctgcgtgtatctgagcatgaacctct 132 || || ||| || ||| | ||||||||||||||| | |||||| |||| | |||| | Sbjct: 2104 ctgtctgtctcatcgatggctacatgaaaaccagcttcatgtatcctagcacggacctgt 2045 Query: 133 tttgcatatgctagtgaattggaagatacacagcaaacaatggcttgtcgggggcttaac 192 || || ||| | | |||||||||||||| |||||||||||||||| || || || ||| Sbjct: 2044 ttagcgtattccactgaattggaagatatggagcaaacaatggcttggcgaggactcaac 1985 Query: 193 cacaacggncatttaccattatagngctccaaaagaatggcaaacatnctttcaactgat 252 ||||| || ||||||||||| || ||||||||||||| |||||||| |||||||| || Sbjct: 1984 cacaagggccatttaccattgtaatgctccaaaagaatagcaaacatcctttcaacagaa 1925 Query: 253 cctannattgncctgngtatnattacaggcctntnaagcttgg 295 |||| |||| |||| | || || |||||||| | ||| |||| Sbjct: 1924 cctaggattgccctgtgaatcatcacaggcctctcaagtttgg 1882
>emb|Y14368.1|OSTHRRS Oryza sativa mRNA for threonyl-tRNA synthetase, partial Length = 1811 Score = 145 bits (73), Expect = 1e-31 Identities = 228/283 (80%) Strand = Plus / Minus Query: 13 acgactagaatatagttgaattgggctaactgagcctcccgcaccttcttttgaattgtt 72 ||||| ||||| || |||||||||||||| ||||||||||| |||||||| || ||||| Sbjct: 1474 acgacaagaatgtacttgaattgggctaattgagcctcccgtaccttcttctgtattgtc 1415 Query: 73 ctatcagtcatgtcaatgtcaacatgaaaaccagctgcgtgtatctgagcatgaacctct 132 || || ||| || ||| | ||||||||||||||| | |||||| | || | |||| | Sbjct: 1414 ctgtctgtctcatcgatggctacatgaaaaccagcttcatgtatcctaacacggacctgt 1355 Query: 133 tttgcatatgctagtgaattggaagatacacagcaaacaatggcttgtcgggggcttaac 192 || || ||| | | |||||||||||||| |||||||||||||||| || || || ||| Sbjct: 1354 ttagcgtattccactgaattggaagatatggagcaaacaatggcttggcgaggactcaac 1295 Query: 193 cacaacggncatttaccattatagngctccaaaagaatggcaaacatnctttcaactgat 252 ||||| || ||||||||||| || ||||||||||||| |||||||| |||||||| || Sbjct: 1294 cacaagggccatttaccattgtaatgctccaaaagaatagcaaacatcctttcaacagaa 1235 Query: 253 cctannattgncctgngtatnattacaggcctntnaagcttgg 295 |||| |||| |||| | || || |||||||| | ||| |||| Sbjct: 1234 cctaggattgccctgtgaatcatcacaggcctctcaagtttgg 1192
>dbj|AK059095.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-C04, full insert sequence Length = 1312 Score = 145 bits (73), Expect = 1e-31 Identities = 229/283 (80%), Gaps = 1/283 (0%) Strand = Plus / Minus Query: 13 acgactagaatatagttgaattgggctaactgagcctcccgcaccttcttttgaattgtt 72 ||||| ||||| ||||||||||||||||| ||||||||||| |||||||| || ||||| Sbjct: 1044 acgacaagaatgtagttgaattgggctaattgagcctcccgtaccttcttctgtattgtc 985 Query: 73 ctatcagtcatgtcaatgtcaacatgaaaaccagctgcgtgtatctgagcatgaacctct 132 || || ||| || ||| | ||||||||||||||| | |||||| |||| | |||| | Sbjct: 984 ctgtctgtctcatcgatggctacatgaaaaccagcttcatgtatcctagcacggacctgt 925 Query: 133 tttgcatatgctagtgaattggaagatacacagcaaacaatggcttgtcgggggcttaac 192 || || ||| | | ||||||||| |||| |||||||||||||||| || || || ||| Sbjct: 924 ttagcgtattccactgaattgga-gatatggagcaaacaatggcttggcgaggactcaac 866 Query: 193 cacaacggncatttaccattatagngctccaaaagaatggcaaacatnctttcaactgat 252 ||||| || ||||||||||| || ||||||||||||| |||||||| |||||||| || Sbjct: 865 cacaagggccatttaccattgtaatgctccaaaagaatagcaaacatcctttcaacagaa 806 Query: 253 cctannattgncctgngtatnattacaggcctntnaagcttgg 295 |||| |||| |||| | || || |||||||| | ||| |||| Sbjct: 805 cctaggattgccctgtgaatcatcacaggcctctcaagtttgg 763
>gb|AY103693.1| Zea mays PCO073595 mRNA sequence Length = 2491 Score = 143 bits (72), Expect = 4e-31 Identities = 220/272 (80%) Strand = Plus / Minus Query: 13 acgactagaatatagttgaattgggctaactgagcctcccgcaccttcttttgaattgtt 72 ||||| ||||| |||||||||||||| | ||||| ||||| ||||||||||| ||||| Sbjct: 2163 acgacaagaatgtagttgaattgggccagttgagcttcccgtaccttcttttgtattgtc 2104 Query: 73 ctatcagtcatgtcaatgtcaacatgaaaaccagctgcgtgtatctgagcatgaacctct 132 || ||| || |||||| |||||||||||||||||| | |||| ||| |||||| | Sbjct: 2103 ctgtcactcgcgtcaatatcaacatgaaaaccagcttcatgtagagtggcaagaacctgt 2044 Query: 133 tttgcatatgctagtgaattggaagatacacagcaaacaatggcttgtcgggggcttaac 192 || |||||| | | |||| |||||||| ||||||||||||| || || ||||||| | Sbjct: 2043 ttcgcatattccactgaaccagaagataccgagcaaacaatggcctggcgagggcttagc 1984 Query: 193 cacaacggncatttaccattatagngctccaaaagaatggcaaacatnctttcaactgat 252 || || || ||||||||||| || |||||||||||||||||| ||| |||||||| || Sbjct: 1983 cataagggccatttaccattgtaatgctccaaaagaatggcaagcatcctttcaaccgaa 1924 Query: 253 cctannattgncctgngtatnattacaggcct 284 |||| |||| |||| |||| || |||||||| Sbjct: 1923 cctaggattgccctgtgtatcatcacaggcct 1892
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 109 bits (55), Expect = 6e-21 Identities = 123/149 (82%) Strand = Plus / Plus Query: 147 tgaattggaagatacacagcaaacaatggcttgtcgggggcttaaccacaacggncattt 206 |||||||||||||| |||||||||||||||| || || || |||||||| || ||||| Sbjct: 11882567 tgaattggaagatatggagcaaacaatggcttggcgaggactcaaccacaagggccattt 11882626 Query: 207 accattatagngctccaaaagaatggcaaacatnctttcaactgatcctannattgncct 266 |||||| || ||||||||||||| |||||||| |||||||| || |||| |||| ||| Sbjct: 11882627 accattgtaatgctccaaaagaatagcaaacatcctttcaacagaacctaggattgccct 11882686 Query: 267 gngtatnattacaggcctntnaagcttgg 295 | | || || |||||||| | ||| |||| Sbjct: 11882687 gtgaatcatcacaggcctctcaagtttgg 11882715 Score = 60.0 bits (30), Expect = 5e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 13 acgactagaatatagttgaattgggctaactgagcctcccgcacct 58 ||||| ||||| ||||||||||||||||| ||||||||||| |||| Sbjct: 11881178 acgacaagaatgtagttgaattgggctaattgagcctcccgtacct 11881223
>dbj|AP003918.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1705_A03 Length = 168689 Score = 109 bits (55), Expect = 6e-21 Identities = 123/149 (82%) Strand = Plus / Plus Query: 147 tgaattggaagatacacagcaaacaatggcttgtcgggggcttaaccacaacggncattt 206 |||||||||||||| |||||||||||||||| || || || |||||||| || ||||| Sbjct: 160852 tgaattggaagatatggagcaaacaatggcttggcgaggactcaaccacaagggccattt 160911 Query: 207 accattatagngctccaaaagaatggcaaacatnctttcaactgatcctannattgncct 266 |||||| || ||||||||||||| |||||||| |||||||| || |||| |||| ||| Sbjct: 160912 accattgtaatgctccaaaagaatagcaaacatcctttcaacagaacctaggattgccct 160971 Query: 267 gngtatnattacaggcctntnaagcttgg 295 | | || || |||||||| | ||| |||| Sbjct: 160972 gtgaatcatcacaggcctctcaagtttgg 161000 Score = 60.0 bits (30), Expect = 5e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 13 acgactagaatatagttgaattgggctaactgagcctcccgcacct 58 ||||| ||||| ||||||||||||||||| ||||||||||| |||| Sbjct: 159463 acgacaagaatgtagttgaattgggctaattgagcctcccgtacct 159508
>dbj|AP005487.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1212_C09 Length = 120818 Score = 109 bits (55), Expect = 6e-21 Identities = 123/149 (82%) Strand = Plus / Plus Query: 147 tgaattggaagatacacagcaaacaatggcttgtcgggggcttaaccacaacggncattt 206 |||||||||||||| |||||||||||||||| || || || |||||||| || ||||| Sbjct: 31712 tgaattggaagatatggagcaaacaatggcttggcgaggactcaaccacaagggccattt 31771 Query: 207 accattatagngctccaaaagaatggcaaacatnctttcaactgatcctannattgncct 266 |||||| || ||||||||||||| |||||||| |||||||| || |||| |||| ||| Sbjct: 31772 accattgtaatgctccaaaagaatagcaaacatcctttcaacagaacctaggattgccct 31831 Query: 267 gngtatnattacaggcctntnaagcttgg 295 | | || || |||||||| | ||| |||| Sbjct: 31832 gtgaatcatcacaggcctctcaagtttgg 31860 Score = 60.0 bits (30), Expect = 5e-06 Identities = 42/46 (91%) Strand = Plus / Plus Query: 13 acgactagaatatagttgaattgggctaactgagcctcccgcacct 58 ||||| ||||| ||||||||||||||||| ||||||||||| |||| Sbjct: 30323 acgacaagaatgtagttgaattgggctaattgagcctcccgtacct 30368
>dbj|AP006632.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT16I03, TM0056, complete sequence Length = 102883 Score = 56.0 bits (28), Expect = 8e-05 Identities = 55/65 (84%) Strand = Plus / Plus Query: 192 ccacaacggncatttaccattatagngctccaaaagaatggcaaacatnctttcaactga 251 |||||| || |||||||| || ||| |||| ||||||||||||||||| | ||||| || Sbjct: 40461 ccacaagggccatttacccttgtagtgctctaaaagaatggcaaacatgcgctcaacaga 40520 Query: 252 tccta 256 ||||| Sbjct: 40521 tccta 40525
>emb|CT025838.2| Medicago truncatula chromosome 5 clone mth2-124f10, COMPLETE SEQUENCE Length = 113309 Score = 50.1 bits (25), Expect = 0.005 Identities = 47/55 (85%) Strand = Plus / Plus Query: 202 catttaccattatagngctccaaaagaatggcaaacatnctttcaactgatccta 256 |||||||| || ||| |||| ||||| ||||||||||| | |||||| ||||||| Sbjct: 1539 catttacccttgtagtgctctaaaagtatggcaaacatgcgttcaacagatccta 1593
>gb|AC002309.2| Homo sapiens Chromosome 22q11.2 Cosmid Clone 63e9 In IGLC Region, complete sequence Length = 36384 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 59 tcttttgaattgttctatcagtca 82 |||||||||||||| ||||||||| Sbjct: 9746 tcttttgaattgttttatcagtca 9769
>ref|NG_000002.1| Homo sapiens immunoglobulin lambda locus (IGL@) on chromosome 22 Length = 909203 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 59 tcttttgaattgttctatcagtca 82 |||||||||||||| ||||||||| Sbjct: 525894 tcttttgaattgttttatcagtca 525917
>dbj|D87013.1| Homo sapiens immunoglobulin lambda gene locus DNA, clone:63E9 Length = 36393 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 59 tcttttgaattgttctatcagtca 82 |||||||||||||| ||||||||| Sbjct: 9749 tcttttgaattgttttatcagtca 9772 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,967,299 Number of Sequences: 3902068 Number of extensions: 1967299 Number of successful extensions: 33921 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 33886 Number of HSP's gapped (non-prelim): 29 length of query: 345 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 323 effective length of database: 17,147,199,772 effective search space: 5538545526356 effective search space used: 5538545526356 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
