ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags11m08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1O10G6_HUMAN (Q8NH81) Olfactory receptor 10G6 (Olfactory receptor... 32 1.3
2COL10_ARATH (Q9LUA9) Zinc finger protein CONSTANS-LIKE 10 31 3.8
3DOCK3_HUMAN (Q8IZD9) Dedicator of cytokinesis protein 3 (Modifie... 30 4.9
4RECO_XANAC (Q8PMU8) DNA repair protein recO (Recombination prote... 30 8.4

>O10G6_HUMAN (Q8NH81) Olfactory receptor 10G6 (Olfactory receptor OR11-280)|
          Length = 332

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 9/79 (11%)
 Frame = +3

Query: 447 ISALSLMGHGYLMM-----IWRHRSASSYQCHISCRNRSFSLGILPDV----AIHSQFQS 599
           I  L++ G+G +++     I  HR    + CH+S  + + S  I+P +     + S+  S
Sbjct: 55  IYLLTVSGNGLIILTVLVDIRLHRPMCLFLCHLSFLDMTISCAIVPKMLAGFLLGSRIIS 114

Query: 600 FGXXXXXXXXYY*LGCLNC 656
           FG        ++ LGC  C
Sbjct: 115 FGGCVIQLFSFHFLGCTEC 133



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>COL10_ARATH (Q9LUA9) Zinc finger protein CONSTANS-LIKE 10|
          Length = 373

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -2

Query: 191 VTLCIKCPWTGLDGRIS-TSRHQTWGTFRAWLIV*PTAGYKKLSVIYSLCYNLHV 30
           V+LC  C W+G DG+ S T+ H    T   +     +A   +LS I+S C +L++
Sbjct: 65  VSLCQNCDWSGHDGKNSTTTSHHKRQTINCYSGCPSSA---ELSSIWSFCMDLNI 116



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>DOCK3_HUMAN (Q8IZD9) Dedicator of cytokinesis protein 3 (Modifier of cell|
            adhesion) (Presenilin-binding protein) (PBP protein)
          Length = 2030

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = +2

Query: 461  PDGAWLLDDDLAT*ICFILPVPYFLSEPELLPGYPARRCHSFTVP 595
            P  AW  D+DL       LPV Y LSE  +L    A+ C S + P
Sbjct: 1918 PSQAWNADEDLEPPY---LPVHYSLSESAVLDSIKAQPCRSHSAP 1959



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>RECO_XANAC (Q8PMU8) DNA repair protein recO (Recombination protein O)|
          Length = 240

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +1

Query: 268 RHAP-PQLW*AAKFIQA*RHIASKRGHTAPCTKMKQQ*ITGTCYNYQIKHESHAQKIEP 441
           RH P P+L+  A + QA RH+AS         + ++  + G  + + ++H+S  Q I+P
Sbjct: 104 RHDPVPELY--ACYAQARRHLASDLPLAWGLRRFERDVLEGLGFAFDLQHDSEGQPIDP 160


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,770,139
Number of Sequences: 219361
Number of extensions: 2235817
Number of successful extensions: 4565
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4563
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6370891296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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