ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags11m06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 54 2e-04
2dbj|AP003509.3| Oryza sativa (japonica cultivar-group) genomic D... 54 2e-04
3dbj|AK073934.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 2e-04
4emb|AJ313098.1|BVU313098 Beta vulgaris mRNA for salt tolerance p... 52 8e-04
5ref|XM_459377.1| Debaryomyces hansenii CBS767 hypothetical prote... 42 0.80
6ref|NM_006996.1| Homo sapiens solute carrier family 19 (thiamine... 42 0.80
7emb|AJ238413.1|HSA238413 Homo sapiens TRMA gene for thiamine tra... 42 0.80
8gb|BC018514.1| Homo sapiens solute carrier family 19 (thiamine t... 42 0.80
9emb|AL021068.2|HS206D15 Human DNA sequence from clone RP1-206D15... 42 0.80
10emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS... 42 0.80
11emb|AJ237724.1|HSA237724 Homo sapiens mRNA for thiamine transpor... 42 0.80
12gb|AF160812.1|AF160812 Homo sapiens thiamine transporter 1 (THT1... 42 0.80
13gb|AF135488.1|AF135488 Homo sapiens high affinity thiamine trans... 42 0.80
14gb|AF153330.1|AF153330 Homo sapiens thiamine carrier 1 (TC1) mRN... 42 0.80
15dbj|AB209540.1| Homo sapiens mRNA for solute carrier family 19, ... 42 0.80
16emb|AL645532.16| Mouse DNA sequence from clone RP23-295E4 on chr... 40 3.1

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                  
Query: 208     catgaacttgttgagcatgtcttgcttctgcattt 242
               |||||| || |||||||||||||||||||||||||
Sbjct: 6806996 catgaatttcttgagcatgtcttgcttctgcattt 6806962



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>dbj|AP003509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0525F01
          Length = 151668

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                 
Query: 208    catgaacttgttgagcatgtcttgcttctgcattt 242
              |||||| || |||||||||||||||||||||||||
Sbjct: 136675 catgaatttcttgagcatgtcttgcttctgcattt 136641



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>dbj|AK073934.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076L21, full
           insert sequence
          Length = 1282

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 208 catgaacttgttgagcatgtcttgcttctgcattt 242
           |||||| || |||||||||||||||||||||||||
Sbjct: 985 catgaatttcttgagcatgtcttgcttctgcattt 951



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>emb|AJ313098.1|BVU313098 Beta vulgaris mRNA for salt tolerance protein 5 (sato5 gene)
          Length = 888

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 207 acatgaacttgttgagcatgtcttgcttctgcat 240
           |||||||||| || ||||||||||||||||||||
Sbjct: 844 acatgaacttcttcagcatgtcttgcttctgcat 811



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>ref|XM_459377.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0E01606g)
           partial mRNA
          Length = 1242

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 207 acatgaacttgttgagcatgt 227
           |||||||||||||||||||||
Sbjct: 557 acatgaacttgttgagcatgt 537



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>ref|NM_006996.1| Homo sapiens solute carrier family 19 (thiamine transporter), member
            2 (SLC19A2), mRNA
          Length = 3668

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 108  actaggatagatgtgattcct 128
            |||||||||||||||||||||
Sbjct: 2783 actaggatagatgtgattcct 2803



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>emb|AJ238413.1|HSA238413 Homo sapiens TRMA gene for thiamine transporter (THTR-1 protein)
          Length = 23760

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 108   actaggatagatgtgattcct 128
             |||||||||||||||||||||
Sbjct: 22190 actaggatagatgtgattcct 22210



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>gb|BC018514.1| Homo sapiens solute carrier family 19 (thiamine transporter), member
            2, mRNA (cDNA clone MGC:17044 IMAGE:3872233), complete
            cds
          Length = 2990

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 108  actaggatagatgtgattcct 128
            |||||||||||||||||||||
Sbjct: 2108 actaggatagatgtgattcct 2128



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>emb|AL021068.2|HS206D15 Human DNA sequence from clone RP1-206D15 on chromosome 1q24 Contains
             the 3' end of the BLZF1 gene for basic leucine zipper
             nuclear factor 1 (JEM-1), the gene for a novel protein
             (FLJ25846), a novel gene, the SLC19A2 gene for solute
             carrier family 19 (thiamine transporter) member 2, an ATP
             synthase 6 (MTATP6) pseudogene, and a CpG island, complete
             sequence
          Length = 101574

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 108   actaggatagatgtgattcct 128
             |||||||||||||||||||||
Sbjct: 22190 actaggatagatgtgattcct 22210



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>emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces
              hansenii
          Length = 2037969

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 207    acatgaacttgttgagcatgt 227
              |||||||||||||||||||||
Sbjct: 100016 acatgaacttgttgagcatgt 100036



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>emb|AJ237724.1|HSA237724 Homo sapiens mRNA for thiamine transporter (THTR-1), partial
          Length = 4126

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 108  actaggatagatgtgattcct 128
            |||||||||||||||||||||
Sbjct: 2556 actaggatagatgtgattcct 2576



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>gb|AF160812.1|AF160812 Homo sapiens thiamine transporter 1 (THT1) mRNA, complete cds
          Length = 3530

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 108  actaggatagatgtgattcct 128
            |||||||||||||||||||||
Sbjct: 2642 actaggatagatgtgattcct 2662



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>gb|AF135488.1|AF135488 Homo sapiens high affinity thiamine transporter mRNA, complete cds
          Length = 3572

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 108  actaggatagatgtgattcct 128
            |||||||||||||||||||||
Sbjct: 2706 actaggatagatgtgattcct 2726



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>gb|AF153330.1|AF153330 Homo sapiens thiamine carrier 1 (TC1) mRNA, complete cds
          Length = 3668

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 108  actaggatagatgtgattcct 128
            |||||||||||||||||||||
Sbjct: 2783 actaggatagatgtgattcct 2803



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>dbj|AB209540.1| Homo sapiens mRNA for solute carrier family 19, member 2 variant
            protein
          Length = 3130

 Score = 42.1 bits (21), Expect = 0.80
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 108  actaggatagatgtgattcct 128
            |||||||||||||||||||||
Sbjct: 2265 actaggatagatgtgattcct 2285



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>emb|AL645532.16| Mouse DNA sequence from clone RP23-295E4 on chromosome 11 Contains two
             novel genes, the 3' end of the Egfr gene for epidermal
             growth factor receptor and the gene for a novel F-box
             domain containing protein, complete sequence
          Length = 161348

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    aaccagacactaaaccacaa 87
             ||||||||||||||||||||
Sbjct: 64822 aaccagacactaaaccacaa 64803


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,381,647
Number of Sequences: 3902068
Number of extensions: 1381647
Number of successful extensions: 24051
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24031
Number of HSP's gapped (non-prelim): 20
length of query: 244
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 222
effective length of database: 17,147,199,772
effective search space: 3806678349384
effective search space used: 3806678349384
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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