| Clone Name | rbags11m06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 54.0 bits (27), Expect = 2e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 208 catgaacttgttgagcatgtcttgcttctgcattt 242 |||||| || ||||||||||||||||||||||||| Sbjct: 6806996 catgaatttcttgagcatgtcttgcttctgcattt 6806962
>dbj|AP003509.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0525F01 Length = 151668 Score = 54.0 bits (27), Expect = 2e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 208 catgaacttgttgagcatgtcttgcttctgcattt 242 |||||| || ||||||||||||||||||||||||| Sbjct: 136675 catgaatttcttgagcatgtcttgcttctgcattt 136641
>dbj|AK073934.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076L21, full insert sequence Length = 1282 Score = 54.0 bits (27), Expect = 2e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 208 catgaacttgttgagcatgtcttgcttctgcattt 242 |||||| || ||||||||||||||||||||||||| Sbjct: 985 catgaatttcttgagcatgtcttgcttctgcattt 951
>emb|AJ313098.1|BVU313098 Beta vulgaris mRNA for salt tolerance protein 5 (sato5 gene) Length = 888 Score = 52.0 bits (26), Expect = 8e-04 Identities = 32/34 (94%) Strand = Plus / Minus Query: 207 acatgaacttgttgagcatgtcttgcttctgcat 240 |||||||||| || |||||||||||||||||||| Sbjct: 844 acatgaacttcttcagcatgtcttgcttctgcat 811
>ref|XM_459377.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0E01606g) partial mRNA Length = 1242 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 207 acatgaacttgttgagcatgt 227 ||||||||||||||||||||| Sbjct: 557 acatgaacttgttgagcatgt 537
>ref|NM_006996.1| Homo sapiens solute carrier family 19 (thiamine transporter), member 2 (SLC19A2), mRNA Length = 3668 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 108 actaggatagatgtgattcct 128 ||||||||||||||||||||| Sbjct: 2783 actaggatagatgtgattcct 2803
>emb|AJ238413.1|HSA238413 Homo sapiens TRMA gene for thiamine transporter (THTR-1 protein) Length = 23760 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 108 actaggatagatgtgattcct 128 ||||||||||||||||||||| Sbjct: 22190 actaggatagatgtgattcct 22210
>gb|BC018514.1| Homo sapiens solute carrier family 19 (thiamine transporter), member 2, mRNA (cDNA clone MGC:17044 IMAGE:3872233), complete cds Length = 2990 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 108 actaggatagatgtgattcct 128 ||||||||||||||||||||| Sbjct: 2108 actaggatagatgtgattcct 2128
>emb|AL021068.2|HS206D15 Human DNA sequence from clone RP1-206D15 on chromosome 1q24 Contains the 3' end of the BLZF1 gene for basic leucine zipper nuclear factor 1 (JEM-1), the gene for a novel protein (FLJ25846), a novel gene, the SLC19A2 gene for solute carrier family 19 (thiamine transporter) member 2, an ATP synthase 6 (MTATP6) pseudogene, and a CpG island, complete sequence Length = 101574 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 108 actaggatagatgtgattcct 128 ||||||||||||||||||||| Sbjct: 22190 actaggatagatgtgattcct 22210
>emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces hansenii Length = 2037969 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 207 acatgaacttgttgagcatgt 227 ||||||||||||||||||||| Sbjct: 100016 acatgaacttgttgagcatgt 100036
>emb|AJ237724.1|HSA237724 Homo sapiens mRNA for thiamine transporter (THTR-1), partial Length = 4126 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 108 actaggatagatgtgattcct 128 ||||||||||||||||||||| Sbjct: 2556 actaggatagatgtgattcct 2576
>gb|AF160812.1|AF160812 Homo sapiens thiamine transporter 1 (THT1) mRNA, complete cds Length = 3530 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 108 actaggatagatgtgattcct 128 ||||||||||||||||||||| Sbjct: 2642 actaggatagatgtgattcct 2662
>gb|AF135488.1|AF135488 Homo sapiens high affinity thiamine transporter mRNA, complete cds Length = 3572 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 108 actaggatagatgtgattcct 128 ||||||||||||||||||||| Sbjct: 2706 actaggatagatgtgattcct 2726
>gb|AF153330.1|AF153330 Homo sapiens thiamine carrier 1 (TC1) mRNA, complete cds Length = 3668 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 108 actaggatagatgtgattcct 128 ||||||||||||||||||||| Sbjct: 2783 actaggatagatgtgattcct 2803
>dbj|AB209540.1| Homo sapiens mRNA for solute carrier family 19, member 2 variant protein Length = 3130 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 108 actaggatagatgtgattcct 128 ||||||||||||||||||||| Sbjct: 2265 actaggatagatgtgattcct 2285
>emb|AL645532.16| Mouse DNA sequence from clone RP23-295E4 on chromosome 11 Contains two novel genes, the 3' end of the Egfr gene for epidermal growth factor receptor and the gene for a novel F-box domain containing protein, complete sequence Length = 161348 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 aaccagacactaaaccacaa 87 |||||||||||||||||||| Sbjct: 64822 aaccagacactaaaccacaa 64803 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,381,647 Number of Sequences: 3902068 Number of extensions: 1381647 Number of successful extensions: 24051 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 24031 Number of HSP's gapped (non-prelim): 20 length of query: 244 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 222 effective length of database: 17,147,199,772 effective search space: 3806678349384 effective search space used: 3806678349384 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)