ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags12b05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 361 bits (182), Expect = 2e-96 Identities = 379/445 (85%) Strand = Plus / Minus Query: 183 tttcacctcccctcggctttgatcagctgagagaaaaccctgctcatcgacacgtcggag 242 |||||||| ||||| |||||||| ||||||||||| ||||||||||| || ||||||||| Sbjct: 13143743 tttcaccttccctcagctttgattagctgagagaacaccctgctcatggaaacgtcggag 13143684 Query: 243 aggtcgtggtcaggctcgtgcgaagctccgtcctccgccatcgtcacgctgatgctctcc 302 ||||| || |||||||| || |||||||| | |||||||| ||||||||||||||||| Sbjct: 13143683 aggtcatgatcaggctcatgtgaagctccagcttccgccattgtcacgctgatgctctcg 13143624 Query: 303 atggcaccgacgtgctgaacctgcgacgacaggtcgacgatccggttcatgctgttcacg 362 | ||| |||| || ||| || ||||||| || ||||| |||| |||||||||||| || Sbjct: 13143623 agggcgccgatgttctggacttgcgacgggagttcgacaatcctgttcatgctgtttaca 13143564 Query: 363 tccgacacggtcgaagaatccgcgtcctggagctgcaggacatactccaagttccagagc 422 || || || ||||| ||||| || ||||||||||||||||| |||||||||||||| || Sbjct: 13143563 tctgatactgtcgatgaatctgcatcctggagctgcaggacgtactccaagttccacagg 13143504 Query: 423 acgtcccccatcgacggccgctccacgccgtagtccgccaggcacttctccaccgtctcg 482 || || ||||| || ||||||||||| ||||||||||||||||| |||||||| || ||| Sbjct: 13143503 acatctcccatggatggccgctccacaccgtagtccgccaggcatttctccactgtttcg 13143444 Query: 483 ccgaacttccttagagagtccggcctgatcgcgccggaaagcttctggtcaacgatctga 542 || |||||||| ||||| ||||||||||| | || |||| ||| || ||||||||| Sbjct: 13143443 ccaaacttcctcagagaatccggcctgattgaaccagaaactcgctgatcgacgatctga 13143384 Query: 543 tgcagctcccctctcttctgccacttcattccccactctgccaagttcaccatttncctt 602 |||||||| |||||||||||||| ||||| |||||||||||||| |||||||| | |||| Sbjct: 13143383 tgcagctctcctctcttctgccatttcatcccccactctgccaaattcaccatctccctt 13143324 Query: 603 gggagcgaagggtcaatcaccggcc 627 ||||||| |||||||||||| |||| Sbjct: 13143323 gggagcgtagggtcaatcactggcc 13143299
>dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0012F14 Length = 168629 Score = 361 bits (182), Expect = 2e-96 Identities = 379/445 (85%) Strand = Plus / Minus Query: 183 tttcacctcccctcggctttgatcagctgagagaaaaccctgctcatcgacacgtcggag 242 |||||||| ||||| |||||||| ||||||||||| ||||||||||| || ||||||||| Sbjct: 60931 tttcaccttccctcagctttgattagctgagagaacaccctgctcatggaaacgtcggag 60872 Query: 243 aggtcgtggtcaggctcgtgcgaagctccgtcctccgccatcgtcacgctgatgctctcc 302 ||||| || |||||||| || |||||||| | |||||||| ||||||||||||||||| Sbjct: 60871 aggtcatgatcaggctcatgtgaagctccagcttccgccattgtcacgctgatgctctcg 60812 Query: 303 atggcaccgacgtgctgaacctgcgacgacaggtcgacgatccggttcatgctgttcacg 362 | ||| |||| || ||| || ||||||| || ||||| |||| |||||||||||| || Sbjct: 60811 agggcgccgatgttctggacttgcgacgggagttcgacaatcctgttcatgctgtttaca 60752 Query: 363 tccgacacggtcgaagaatccgcgtcctggagctgcaggacatactccaagttccagagc 422 || || || ||||| ||||| || ||||||||||||||||| |||||||||||||| || Sbjct: 60751 tctgatactgtcgatgaatctgcatcctggagctgcaggacgtactccaagttccacagg 60692 Query: 423 acgtcccccatcgacggccgctccacgccgtagtccgccaggcacttctccaccgtctcg 482 || || ||||| || ||||||||||| ||||||||||||||||| |||||||| || ||| Sbjct: 60691 acatctcccatggatggccgctccacaccgtagtccgccaggcatttctccactgtttcg 60632 Query: 483 ccgaacttccttagagagtccggcctgatcgcgccggaaagcttctggtcaacgatctga 542 || |||||||| ||||| ||||||||||| | || |||| ||| || ||||||||| Sbjct: 60631 ccaaacttcctcagagaatccggcctgattgaaccagaaactcgctgatcgacgatctga 60572 Query: 543 tgcagctcccctctcttctgccacttcattccccactctgccaagttcaccatttncctt 602 |||||||| |||||||||||||| ||||| |||||||||||||| |||||||| | |||| Sbjct: 60571 tgcagctctcctctcttctgccatttcatcccccactctgccaaattcaccatctccctt 60512 Query: 603 gggagcgaagggtcaatcaccggcc 627 ||||||| |||||||||||| |||| Sbjct: 60511 gggagcgtagggtcaatcactggcc 60487
>dbj|AK065468.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013020G14, full insert sequence Length = 3151 Score = 361 bits (182), Expect = 2e-96 Identities = 379/445 (85%) Strand = Plus / Minus Query: 183 tttcacctcccctcggctttgatcagctgagagaaaaccctgctcatcgacacgtcggag 242 |||||||| ||||| |||||||| ||||||||||| ||||||||||| || ||||||||| Sbjct: 2861 tttcaccttccctcagctttgattagctgagagaacaccctgctcatggaaacgtcggag 2802 Query: 243 aggtcgtggtcaggctcgtgcgaagctccgtcctccgccatcgtcacgctgatgctctcc 302 ||||| || |||||||| || |||||||| | |||||||| ||||||||||||||||| Sbjct: 2801 aggtcatgatcaggctcatgtgaagctccagcttccgccattgtcacgctgatgctctcg 2742 Query: 303 atggcaccgacgtgctgaacctgcgacgacaggtcgacgatccggttcatgctgttcacg 362 | ||| |||| || ||| || ||||||| || ||||| |||| |||||||||||| || Sbjct: 2741 agggcgccgatgttctggacttgcgacgggagttcgacaatcctgttcatgctgtttaca 2682 Query: 363 tccgacacggtcgaagaatccgcgtcctggagctgcaggacatactccaagttccagagc 422 || || || ||||| ||||| || ||||||||||||||||| |||||||||||||| || Sbjct: 2681 tctgatactgtcgatgaatctgcatcctggagctgcaggacgtactccaagttccacagg 2622 Query: 423 acgtcccccatcgacggccgctccacgccgtagtccgccaggcacttctccaccgtctcg 482 || || ||||| || ||||||||||| ||||||||||||||||| |||||||| || ||| Sbjct: 2621 acatctcccatggatggccgctccacaccgtagtccgccaggcatttctccactgtttcg 2562 Query: 483 ccgaacttccttagagagtccggcctgatcgcgccggaaagcttctggtcaacgatctga 542 || |||||||| ||||| ||||||||||| | || |||| ||| || ||||||||| Sbjct: 2561 ccaaacttcctcagagaatccggcctgattgaaccagaaactcgctgatcgacgatctga 2502 Query: 543 tgcagctcccctctcttctgccacttcattccccactctgccaagttcaccatttncctt 602 |||||||| |||||||||||||| ||||| |||||||||||||| |||||||| | |||| Sbjct: 2501 tgcagctctcctctcttctgccatttcatcccccactctgccaaattcaccatctccctt 2442 Query: 603 gggagcgaagggtcaatcaccggcc 627 ||||||| |||||||||||| |||| Sbjct: 2441 gggagcgtagggtcaatcactggcc 2417
>dbj|AK061669.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-F10, full insert sequence Length = 1037 Score = 353 bits (178), Expect = 4e-94 Identities = 378/445 (84%) Strand = Plus / Minus Query: 183 tttcacctcccctcggctttgatcagctgagagaaaaccctgctcatcgacacgtcggag 242 |||||||| ||||| |||||||| ||||||||||| ||||||||||| || ||||||||| Sbjct: 744 tttcaccttccctcagctttgattagctgagagaacaccctgctcatggaaacgtcggag 685 Query: 243 aggtcgtggtcaggctcgtgcgaagctccgtcctccgccatcgtcacgctgatgctctcc 302 ||||| || |||||||| || |||||||| | |||||||| ||||||||||||||||| Sbjct: 684 aggtcatgatcaggctcatgtgaagctccagcttccgccattgtcacgctgatgctctcg 625 Query: 303 atggcaccgacgtgctgaacctgcgacgacaggtcgacgatccggttcatgctgttcacg 362 | ||| |||| || ||| || |||||| || ||||| |||| |||||||||||| || Sbjct: 624 agggcgccgatgttctggactggcgacgggagttcgacaatcctgttcatgctgtttaca 565 Query: 363 tccgacacggtcgaagaatccgcgtcctggagctgcaggacatactccaagttccagagc 422 || || || ||||| ||||| || ||||||||||||||||| |||||||||||||| || Sbjct: 564 tctgatactgtcgatgaatctgcatcctggagctgcaggacgtactccaagttccacagg 505 Query: 423 acgtcccccatcgacggccgctccacgccgtagtccgccaggcacttctccaccgtctcg 482 || || ||||| || ||||||||||| ||||||||||||||||| |||||||| || ||| Sbjct: 504 acatctcccatggatggccgctccacaccgtagtccgccaggcatttctccactgtttcg 445 Query: 483 ccgaacttccttagagagtccggcctgatcgcgccggaaagcttctggtcaacgatctga 542 || |||||||| ||||| ||||||||||| | || |||| ||| || ||||||||| Sbjct: 444 ccaaacttcctcagagaatccggcctgattgaaccagaaactcgctgatcgacgatctga 385 Query: 543 tgcagctcccctctcttctgccacttcattccccactctgccaagttcaccatttncctt 602 |||||||| |||||||||||||| ||||| |||||||||||||| |||||||| | |||| Sbjct: 384 tgcagctctcctctcttctgccatttcatcccccactctgccaaattcaccatctccctt 325 Query: 603 gggagcgaagggtcaatcaccggcc 627 ||||||| |||||||||||| |||| Sbjct: 324 gggagcgtagggtcaatcactggcc 300
>emb|AJ234596.1|HVU234596 Hordeum vulgare genomic DNA fragment; clone MWG0858.rev Length = 265 Score = 89.7 bits (45), Expect = 1e-14 Identities = 75/85 (88%) Strand = Plus / Plus Query: 406 actccaagttccagagcacgtcccccatcgacggccgctccacgccgtagtccgccaggc 465 ||||||||||||| |||||||| ||||||| |||||| || |||||||| ||||| |||| Sbjct: 107 actccaagttccacagcacgtcgcccatcgccggccgatcgacgccgtactccgcgaggc 166 Query: 466 acttctccaccgtctcgccgaactt 490 | |||||| | |||||||||||||| Sbjct: 167 atttctccgcggtctcgccgaactt 191
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 83.8 bits (42), Expect = 6e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 413 gttccagagcacgtcccccatcgacggccgctccacgccgtagtccgccaggcacttctc 472 |||||| |||||||| ||||| |||||||| |||| |||||||||||||||||||||||| Sbjct: 1388151 gttccacagcacgtcgcccatggacggccggtccaggccgtagtccgccaggcacttctc 1388092 Query: 473 caccgtctcgccgaactt 490 | |||||| ||||||| Sbjct: 1388091 tgcggtctcggcgaactt 1388074 Score = 79.8 bits (40), Expect = 1e-11 Identities = 79/92 (85%) Strand = Plus / Minus Query: 416 ccagagcacgtcccccatcgacggccgctccacgccgtagtccgccaggcacttctccac 475 |||||||||||||||||| |||||||||||||||||| ||||| ||||||||||| | Sbjct: 9607327 ccagagcacgtcccccatgctcggccgctccacgccgtactccgcgaggcacttctcggc 9607268 Query: 476 cgtctcgccgaacttccttagagagtccggcc 507 || ||| |||||||| | || |||||||||| Sbjct: 9607267 ggtgtcggcgaacttcttgagcgagtccggcc 9607236
>gb|AC119747.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1293G11, from chromosome 3, complete sequence Length = 147806 Score = 83.8 bits (42), Expect = 6e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 413 gttccagagcacgtcccccatcgacggccgctccacgccgtagtccgccaggcacttctc 472 |||||| |||||||| ||||| |||||||| |||| |||||||||||||||||||||||| Sbjct: 49654 gttccacagcacgtcgcccatggacggccggtccaggccgtagtccgccaggcacttctc 49595 Query: 473 caccgtctcgccgaactt 490 | |||||| ||||||| Sbjct: 49594 tgcggtctcggcgaactt 49577
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 83.8 bits (42), Expect = 6e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 413 gttccagagcacgtcccccatcgacggccgctccacgccgtagtccgccaggcacttctc 472 |||||| |||||||| ||||| |||||||| |||| |||||||||||||||||||||||| Sbjct: 1388149 gttccacagcacgtcgcccatggacggccggtccaggccgtagtccgccaggcacttctc 1388090 Query: 473 caccgtctcgccgaactt 490 | |||||| ||||||| Sbjct: 1388089 tgcggtctcggcgaactt 1388072 Score = 79.8 bits (40), Expect = 1e-11 Identities = 79/92 (85%) Strand = Plus / Minus Query: 416 ccagagcacgtcccccatcgacggccgctccacgccgtagtccgccaggcacttctccac 475 |||||||||||||||||| |||||||||||||||||| ||||| ||||||||||| | Sbjct: 9605448 ccagagcacgtcccccatgctcggccgctccacgccgtactccgcgaggcacttctcggc 9605389 Query: 476 cgtctcgccgaacttccttagagagtccggcc 507 || ||| |||||||| | || |||||||||| Sbjct: 9605388 ggtgtcggcgaacttcttgagcgagtccggcc 9605357
>dbj|AK105735.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-H11, full insert sequence Length = 2291 Score = 83.8 bits (42), Expect = 6e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 413 gttccagagcacgtcccccatcgacggccgctccacgccgtagtccgccaggcacttctc 472 |||||| |||||||| ||||| |||||||| |||| |||||||||||||||||||||||| Sbjct: 1954 gttccacagcacgtcgcccatggacggccggtccaggccgtagtccgccaggcacttctc 1895 Query: 473 caccgtctcgccgaactt 490 | |||||| ||||||| Sbjct: 1894 tgcggtctcggcgaactt 1877
>dbj|AK102524.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033096A14, full insert sequence Length = 2725 Score = 83.8 bits (42), Expect = 6e-13 Identities = 69/78 (88%) Strand = Plus / Minus Query: 413 gttccagagcacgtcccccatcgacggccgctccacgccgtagtccgccaggcacttctc 472 |||||| |||||||| ||||| |||||||| |||| |||||||||||||||||||||||| Sbjct: 2403 gttccacagcacgtcgcccatggacggccggtccaggccgtagtccgccaggcacttctc 2344 Query: 473 caccgtctcgccgaactt 490 | |||||| ||||||| Sbjct: 2343 tgcggtctcggcgaactt 2326
>ref|XM_475640.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2529 Score = 81.8 bits (41), Expect = 3e-12 Identities = 158/197 (80%) Strand = Plus / Minus Query: 387 tcctggagctgcaggacatactccaagttccagagcacgtcccccatcgacggccgctcc 446 ||||| ||||| || ||| |||||| |||||| || || || ||||||| ||||| || Sbjct: 2348 tcctgcagctggagcacaaactccaggttccacaggacatctcccatcgtaggccgttcg 2289 Query: 447 acgccgtagtccgccaggcacttctccaccgtctcgccgaacttccttagagagtccggc 506 |||||||| ||||| ||||| |||||||||||||| ||| ||||||| || || || ||| Sbjct: 2288 acgccgtactccgcgaggcatttctccaccgtctccccgtacttcctcagcgattctggc 2229 Query: 507 ctgatcgcgccggaaagcttctggtcaacgatctgatgcagctcccctctcttctgccac 566 ||||| | |||| | | ||| ||| | |||||||| ||||| |||||||| |||||| Sbjct: 2228 ctgattgtcccggcgatcctcttgtcgatgatctgatcaagctctcctctcttttgccac 2169 Query: 567 ttcattccccactctgc 583 || || |||||||||| Sbjct: 2168 ttaatagcccactctgc 2152
>gb|AC124144.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0099P06, complete sequence Length = 135117 Score = 81.8 bits (41), Expect = 3e-12 Identities = 158/197 (80%) Strand = Plus / Minus Query: 387 tcctggagctgcaggacatactccaagttccagagcacgtcccccatcgacggccgctcc 446 ||||| ||||| || ||| |||||| |||||| || || || ||||||| ||||| || Sbjct: 35302 tcctgcagctggagcacaaactccaggttccacaggacatctcccatcgtaggccgttcg 35243 Query: 447 acgccgtagtccgccaggcacttctccaccgtctcgccgaacttccttagagagtccggc 506 |||||||| ||||| ||||| |||||||||||||| ||| ||||||| || || || ||| Sbjct: 35242 acgccgtactccgcgaggcatttctccaccgtctccccgtacttcctcagcgattctggc 35183 Query: 507 ctgatcgcgccggaaagcttctggtcaacgatctgatgcagctcccctctcttctgccac 566 ||||| | |||| | | ||| ||| | |||||||| ||||| |||||||| |||||| Sbjct: 35182 ctgattgtcccggcgatcctcttgtcgatgatctgatcaagctctcctctcttttgccac 35123 Query: 567 ttcattccccactctgc 583 || || |||||||||| Sbjct: 35122 ttaatagcccactctgc 35106
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 81.8 bits (41), Expect = 3e-12 Identities = 158/197 (80%) Strand = Plus / Minus Query: 387 tcctggagctgcaggacatactccaagttccagagcacgtcccccatcgacggccgctcc 446 ||||| ||||| || ||| |||||| |||||| || || || ||||||| ||||| || Sbjct: 3612955 tcctgcagctggagcacaaactccaggttccacaggacatctcccatcgtaggccgttcg 3612896 Query: 447 acgccgtagtccgccaggcacttctccaccgtctcgccgaacttccttagagagtccggc 506 |||||||| ||||| ||||| |||||||||||||| ||| ||||||| || || || ||| Sbjct: 3612895 acgccgtactccgcgaggcatttctccaccgtctccccgtacttcctcagcgattctggc 3612836 Query: 507 ctgatcgcgccggaaagcttctggtcaacgatctgatgcagctcccctctcttctgccac 566 ||||| | |||| | | ||| ||| | |||||||| ||||| |||||||| |||||| Sbjct: 3612835 ctgattgtcccggcgatcctcttgtcgatgatctgatcaagctctcctctcttttgccac 3612776 Query: 567 ttcattccccactctgc 583 || || |||||||||| Sbjct: 3612775 ttaatagcccactctgc 3612759 Score = 54.0 bits (27), Expect = 6e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 413 gttccagagcacgtcccccatcgacggccgctccacgccgtagtccgccaggcacttctc 472 |||||| || ||||| ||||| ||||| || |||||||| | ||| |||||||||||||| Sbjct: 11688943 gttccaaaggacgtcgcccatggacgggcggtccacgccatggtcggccaggcacttctc 11689002 Query: 473 caccgtctcgccgaacttc 491 |||| ||| |||||||| Sbjct: 11689003 tgccgtttcggcgaacttc 11689021
>gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genomic sequence, complete sequence Length = 165113 Score = 79.8 bits (40), Expect = 1e-11 Identities = 79/92 (85%) Strand = Plus / Minus Query: 416 ccagagcacgtcccccatcgacggccgctccacgccgtagtccgccaggcacttctccac 475 |||||||||||||||||| |||||||||||||||||| ||||| ||||||||||| | Sbjct: 28226 ccagagcacgtcccccatgctcggccgctccacgccgtactccgcgaggcacttctcggc 28167 Query: 476 cgtctcgccgaacttccttagagagtccggcc 507 || ||| |||||||| | || |||||||||| Sbjct: 28166 ggtgtcggcgaacttcttgagcgagtccggcc 28135
>gb|AC137069.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0009C19, from chromosome 3, complete sequence Length = 131709 Score = 79.8 bits (40), Expect = 1e-11 Identities = 79/92 (85%) Strand = Plus / Plus Query: 416 ccagagcacgtcccccatcgacggccgctccacgccgtagtccgccaggcacttctccac 475 |||||||||||||||||| |||||||||||||||||| ||||| ||||||||||| | Sbjct: 5359 ccagagcacgtcccccatgctcggccgctccacgccgtactccgcgaggcacttctcggc 5418 Query: 476 cgtctcgccgaacttccttagagagtccggcc 507 || ||| |||||||| | || |||||||||| Sbjct: 5419 ggtgtcggcgaacttcttgagcgagtccggcc 5450
>dbj|AK100137.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010L23, full insert sequence Length = 2989 Score = 79.8 bits (40), Expect = 1e-11 Identities = 79/92 (85%) Strand = Plus / Minus Query: 416 ccagagcacgtcccccatcgacggccgctccacgccgtagtccgccaggcacttctccac 475 |||||||||||||||||| |||||||||||||||||| ||||| ||||||||||| | Sbjct: 2538 ccagagcacgtcccccatgctcggccgctccacgccgtactccgcgaggcacttctcggc 2479 Query: 476 cgtctcgccgaacttccttagagagtccggcc 507 || ||| |||||||| | || |||||||||| Sbjct: 2478 ggtgtcggcgaacttcttgagcgagtccggcc 2447
>dbj|AK067124.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098L04, full insert sequence Length = 1216 Score = 73.8 bits (37), Expect = 6e-10 Identities = 103/125 (82%) Strand = Plus / Minus Query: 387 tcctggagctgcaggacatactccaagttccagagcacgtcccccatcgacggccgctcc 446 ||||| ||||| || ||| |||||| |||||| || || || ||||||| ||||| || Sbjct: 816 tcctgcagctggagcacaaactccaggttccacaggacatctcccatcgtaggccgttcg 757 Query: 447 acgccgtagtccgccaggcacttctccaccgtctcgccgaacttccttagagagtccggc 506 |||||||| ||||| ||||| |||||||||||||| ||| ||||||| || || || ||| Sbjct: 756 acgccgtactccgcgaggcatttctccaccgtctccccgtacttcctcagcgattctggc 697 Query: 507 ctgat 511 ||||| Sbjct: 696 ctgat 692
>gb|BT018566.1| Zea mays clone EL01N0441H06.d mRNA sequence Length = 1305 Score = 71.9 bits (36), Expect = 2e-09 Identities = 66/76 (86%) Strand = Plus / Minus Query: 416 ccagagcacgtcccccatcgacggccgctccacgccgtagtccgccaggcacttctccac 475 ||||||||||||||| || | ||||||||||||||||| ||||| |||||||||||| | Sbjct: 717 ccagagcacgtcccctattgcgggccgctccacgccgtactccgcgaggcacttctccgc 658 Query: 476 cgtctcgccgaacttc 491 || ||| |||||||| Sbjct: 657 ggtgtcgacgaacttc 642
>ref|XM_476281.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2610 Score = 54.0 bits (27), Expect = 6e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 413 gttccagagcacgtcccccatcgacggccgctccacgccgtagtccgccaggcacttctc 472 |||||| || ||||| ||||| ||||| || |||||||| | ||| |||||||||||||| Sbjct: 2400 gttccaaaggacgtcgcccatggacgggcggtccacgccatggtcggccaggcacttctc 2341 Query: 473 caccgtctcgccgaacttc 491 |||| ||| |||||||| Sbjct: 2340 tgccgtttcggcgaacttc 2322
>ref|NM_197528.1| Oryza sativa (japonica cultivar-group) putative receptor-like protein kinase (OSJNBa0053C23.6), mRNA Length = 3269 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 413 gttccagagcacgtcccccatcgacggccgctccacgccgtagtccgccaggcac 467 |||||| | |||||| ||||| |||||||||| | ||||||||||||| |||||| Sbjct: 2301 gttccacaccacgtcgcccatggacggccgctgctcgccgtagtccgcgaggcac 2247
>gb|AC130609.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0048F12, complete sequence Length = 139627 Score = 54.0 bits (27), Expect = 6e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 413 gttccagagcacgtcccccatcgacggccgctccacgccgtagtccgccaggcacttctc 472 |||||| || ||||| ||||| ||||| || |||||||| | ||| |||||||||||||| Sbjct: 133378 gttccaaaggacgtcgcccatggacgggcggtccacgccatggtcggccaggcacttctc 133437 Query: 473 caccgtctcgccgaacttc 491 |||| ||| |||||||| Sbjct: 133438 tgccgtttcggcgaacttc 133456
>gb|AC135923.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0479C09, complete sequence Length = 156776 Score = 54.0 bits (27), Expect = 6e-04 Identities = 66/79 (83%) Strand = Plus / Plus Query: 413 gttccagagcacgtcccccatcgacggccgctccacgccgtagtccgccaggcacttctc 472 |||||| || ||||| ||||| ||||| || |||||||| | ||| |||||||||||||| Sbjct: 14583 gttccaaaggacgtcgcccatggacgggcggtccacgccatggtcggccaggcacttctc 14642 Query: 473 caccgtctcgccgaacttc 491 |||| ||| |||||||| Sbjct: 14643 tgccgtttcggcgaacttc 14661
>gb|AC092389.4| Oryza sativa chromosome 10 BAC OSJNBa0053C23 genomic sequence, complete sequence Length = 194361 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 413 gttccagagcacgtcccccatcgacggccgctccacgccgtagtccgccaggcac 467 |||||| | |||||| ||||| |||||||||| | ||||||||||||| |||||| Sbjct: 151658 gttccacaccacgtcgcccatggacggccgctgctcgccgtagtccgcgaggcac 151712
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 413 gttccagagcacgtcccccatcgacggccgctccacgccgtagtccgccaggcac 467 |||||| | |||||| ||||| |||||||||| | ||||||||||||| |||||| Sbjct: 20273923 gttccacaccacgtcgcccatggacggccgctgctcgccgtagtccgcgaggcac 20273977
>dbj|AK121335.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023119L07, full insert sequence Length = 3171 Score = 54.0 bits (27), Expect = 6e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 413 gttccagagcacgtcccccatcgacggccgctccacgccgtagtccgccaggcacttctc 472 |||||| || ||||| ||||| ||||| || |||||||| | ||| |||||||||||||| Sbjct: 2562 gttccaaaggacgtcgcccatggacgggcggtccacgccatggtcggccaggcacttctc 2503 Query: 473 caccgtctcgccgaacttc 491 |||| ||| |||||||| Sbjct: 2502 tgccgtttcggcgaacttc 2484
>dbj|AK103845.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148J20, full insert sequence Length = 3010 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 413 gttccagagcacgtcccccatcgacggccgctccacgccgtagtccgccaggcac 467 |||||| | |||||| ||||| |||||||||| | ||||||||||||| |||||| Sbjct: 224 gttccacaccacgtcgcccatggacggccgctgctcgccgtagtccgcgaggcac 278
>dbj|AK100616.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108B08, full insert sequence Length = 2441 Score = 54.0 bits (27), Expect = 6e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 413 gttccagagcacgtcccccatcgacggccgctccacgccgtagtccgccaggcacttctc 472 |||||| || ||||| ||||| ||||| || |||||||| | ||| |||||||||||||| Sbjct: 2036 gttccaaaggacgtcgcccatggacgggcggtccacgccatggtcggccaggcacttctc 1977 Query: 473 caccgtctcgccgaacttc 491 |||| ||| |||||||| Sbjct: 1976 tgccgtttcggcgaacttc 1958
>dbj|AK070172.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042J16, full insert sequence Length = 4213 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 413 gttccagagcacgtcccccatcgacggccgctccacgccgtagtccgccaggcac 467 |||||| | |||||| ||||| |||||||||| | ||||||||||||| |||||| Sbjct: 2394 gttccacaccacgtcgcccatggacggccgctgctcgccgtagtccgcgaggcac 2340
>gb|BT024128.1| Zea mays clone EL01N0449F01 mRNA sequence Length = 1401 Score = 54.0 bits (27), Expect = 6e-04 Identities = 87/107 (81%) Strand = Plus / Minus Query: 387 tcctggagctgcaggacatactccaagttccagagcacgtcccccatcgacggccgctcc 446 ||||| |||||||| ||| |||||| |||||| ||||| |||||||| | || ||||| Sbjct: 1006 tcctgcagctgcagcacaaactccaggttccacagcacatcccccatagtaggacgctcg 947 Query: 447 acgccgtagtccgccaggcacttctccaccgtctcgccgaacttcct 493 || || || || || ||| | |||||||||||||| || |||||||| Sbjct: 946 acaccatactctgcaagggatttctccaccgtctctccaaacttcct 900
>dbj|AK065054.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J01, full insert sequence Length = 2875 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Minus Query: 413 gttccagagcacgtcccccatcgacggccgctccacgccgtagtccgccaggcac 467 |||||| | |||||| ||||| |||||||||| | ||||||||||||| |||||| Sbjct: 2307 gttccacaccacgtcgcccatggacggccgctgctcgccgtagtccgcgaggcac 2253
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 54.0 bits (27), Expect = 6e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 413 gttccagagcacgtcccccatcgacggccgctccacgccgtagtccgccaggcac 467 |||||| | |||||| ||||| |||||||||| | ||||||||||||| |||||| Sbjct: 20285199 gttccacaccacgtcgcccatggacggccgctgctcgccgtagtccgcgaggcac 20285253
>gb|AC144343.8| Medicago truncatula clone mth2-12c21, complete sequence Length = 130740 Score = 42.1 bits (21), Expect = 2.2 Identities = 38/44 (86%) Strand = Plus / Plus Query: 567 ttcattccccactctgccaagttcaccatttnccttgggagcga 610 |||||| |||| ||||| ||||||||||||| ||| || ||||| Sbjct: 28856 ttcattgcccattctgctaagttcaccatttccctaggaagcga 28899
>gb|AF288565.1|AF288565 Solanum tuberosum tbrDI4 putative Pto-like serine/threonine kinase gene, partial cds Length = 530 Score = 42.1 bits (21), Expect = 2.2 Identities = 36/41 (87%) Strand = Plus / Minus Query: 555 ctcttctgccacttcattccccactctgccaagttcaccat 595 |||||||||||||||||| |||| || || ||||| ||||| Sbjct: 394 ctcttctgccacttcattgcccattcagctaagttgaccat 354
>gb|AC140345.3| Mus musculus BAC clone RP24-66E22 from 13, complete sequence Length = 238541 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 555 ctcttctgccacttcattccccact 579 |||||||||| |||||||||||||| Sbjct: 138403 ctcttctgcctcttcattccccact 138379
>ref|XM_430535.1| PREDICTED: Gallus gallus LOC430200 (LOC430200), partial mRNA Length = 712 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 543 tgcagctcccctctcttctg 562 |||||||||||||||||||| Sbjct: 8 tgcagctcccctctcttctg 27
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 aagaatccgcgtcctggagc 395 |||||||||||||||||||| Sbjct: 1308329 aagaatccgcgtcctggagc 1308310
>emb|CR381655.6| Zebrafish DNA sequence from clone DKEY-231K15 in linkage group 3, complete sequence Length = 92180 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 393 agctgcaggacatactccaa 412 |||||||||||||||||||| Sbjct: 51484 agctgcaggacatactccaa 51465
>gb|AC165283.2| Mus musculus BAC clone RP24-348M18 from chromosome 12, complete sequence Length = 171825 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 552 cctctcttctgccacttcattccc 575 |||||||||| ||||||||||||| Sbjct: 119351 cctctcttctcccacttcattccc 119374
>emb|BX936343.9| Zebrafish DNA sequence from clone CH211-51C14 in linkage group 3, complete sequence Length = 160177 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 agctgcaggacatactccaa 412 |||||||||||||||||||| Sbjct: 40062 agctgcaggacatactccaa 40081
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 aaatcgaaaccgtagttcag 51 |||||||||||||||||||| Sbjct: 190486 aaatcgaaaccgtagttcag 190467
>gb|DQ374450.1| Nicotiana benthamiana disease resistance protein-like pseudogene, partial sequence Length = 301 Score = 40.1 bits (20), Expect = 8.5 Identities = 35/40 (87%) Strand = Plus / Minus Query: 556 tcttctgccacttcattccccactctgccaagttcaccat 595 ||||||||||||||||| |||| || || ||||| ||||| Sbjct: 272 tcttctgccacttcattgcccattcagctaagttgaccat 233
>gb|DQ374448.1| Nicotiana benthamiana disease resistance protein-like (Pth1) gene, partial cds Length = 303 Score = 40.1 bits (20), Expect = 8.5 Identities = 35/40 (87%) Strand = Plus / Minus Query: 556 tcttctgccacttcattccccactctgccaagttcaccat 595 ||||||||||||||||| |||| || || ||||| ||||| Sbjct: 274 tcttctgccacttcattgcccattcagctaagttgaccat 235
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 352 tgctgttcacgtccgacacg 371 |||||||||||||||||||| Sbjct: 1951396 tgctgttcacgtccgacacg 1951377
>gb|AF332888.1|AF332888 Solanum dulcamara serine/threonine protein kinase pseudogene, partial sequence Length = 1277 Score = 40.1 bits (20), Expect = 8.5 Identities = 35/40 (87%) Strand = Plus / Minus Query: 556 tcttctgccacttcattccccactctgccaagttcaccat 595 ||||||||||||||||| |||| || || ||||| ||||| Sbjct: 737 tcttctgccacttcattgcccattcagctaagttgaccat 698
>ref|XM_395113.2| PREDICTED: Apis mellifera similar to CG18076-PH, isoform H (LOC411644), mRNA Length = 8718 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 379 aatccgcgtcctggagctgc 398 |||||||||||||||||||| Sbjct: 1801 aatccgcgtcctggagctgc 1782
>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome Length = 1669695 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 cttgctcacacccctaacgg 157 |||||||||||||||||||| Sbjct: 1164835 cttgctcacacccctaacgg 1164854
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 352 tgctgttcacgtccgacacggtcg 375 |||||||||||||||||| ||||| Sbjct: 3158222 tgctgttcacgtccgacaaggtcg 3158199 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 cgccatcgtcacgctgatgc 297 |||||||||||||||||||| Sbjct: 2463966 cgccatcgtcacgctgatgc 2463947
>gb|AY110775.1| Zea mays CL12999_1 mRNA sequence Length = 625 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Plus Query: 462 aggcacttctccaccgtctcgccgaacttcct 493 ||||| |||||||||||||| || |||||||| Sbjct: 456 aggcatttctccaccgtctctccaaacttcct 487
>gb|AY104340.1| Zea mays PCO143972 mRNA sequence Length = 674 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 413 gttccagagcacgtcccccatcgacggccgct 444 |||||| ||||||||| ||| ||||||||||| Sbjct: 456 gttccacagcacgtcctccaccgacggccgct 425 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,408,278 Number of Sequences: 3902068 Number of extensions: 3408278 Number of successful extensions: 64252 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 52 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 63728 Number of HSP's gapped (non-prelim): 525 length of query: 627 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 604 effective length of database: 17,143,297,704 effective search space: 10354551813216 effective search space used: 10354551813216 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
