ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags11m05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF262215.1| Oryza sativa guanine nucleotide-exchange protein ... 272 1e-69
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 264 3e-67
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 264 3e-67
4gb|AC118672.3| Genomic sequence for Oryza sativa, Nipponbare str... 264 3e-67
5dbj|AK119229.1| Oryza sativa (japonica cultivar-group) cDNA clon... 256 7e-65
6dbj|AK068209.1| Oryza sativa (japonica cultivar-group) cDNA clon... 256 7e-65
7gb|AY110856.1| Zea mays CL42523_1 mRNA sequence 178 1e-41
8gb|DP000012.1| Macropus eugenii target 1 genomic scaffold 44 0.48
9gb|AC145184.3| Macropus eugenii clone ME_KBa-71M6, complete sequ... 44 0.48
10gb|AC146539.2| Gasterosteus aculeatus clone CH213-129C17, comple... 42 1.9
11gb|AC145141.2| Homo sapiens chromosome 5 clone RP11-1364K7, comp... 42 1.9
12gb|AC146690.1| Gasterosteus aculeatus clone CH213-156J22, comple... 42 1.9
13gb|AC139492.2| Homo sapiens chromosome 5 clone RP11-842C12, comp... 42 1.9
14gb|AC138908.3| Homo sapiens chromosome 5 clone RP11-615D2, compl... 42 1.9
15gb|AC009780.12| Homo sapiens 12 BAC RP11-1C11 (Roswell Park Canc... 42 1.9
16gb|AC092361.3| Homo sapiens chromosome 5 clone RP11-356O21, comp... 42 1.9
17gb|AC008851.7| Homo sapiens chromosome 5 clone CTD-2173D20, comp... 42 1.9
18ref|XM_679956.1| PREDICTED: Danio rerio similar to synaptonemal ... 42 1.9
19ref|XM_691301.1| PREDICTED: Danio rerio similar to Synaptonemal ... 42 1.9
20gb|AC090811.5| Homo sapiens chromosome 8, clone RP11-55J5, compl... 42 1.9
21gb|AC101685.9| Mus musculus chromosome 5, clone RP23-187K3, comp... 42 1.9
22emb|AL929345.15| Zebrafish DNA sequence from clone DKEY-211H10 i... 42 1.9
23gb|AC138850.2| Homo sapiens chromosome 5 clone RP11-1308P14, com... 42 1.9
24gb|AC138832.2| Homo sapiens chromosome 5 clone RP11-1174L13, com... 42 1.9
25gb|AC138828.2| Homo sapiens chromosome 5 clone RP11-1156J4, comp... 42 1.9
26gb|AC108106.4| Homo sapiens chromosome 5 clone RP11-214M1, compl... 42 1.9
27gb|AC138948.2| Homo sapiens chromosome 5 clone RP11-800G17, comp... 42 1.9
28gb|AC138854.2| Homo sapiens chromosome 5 clone RP11-1330D14, com... 42 1.9
29gb|AC138817.2| Homo sapiens chromosome 5 clone RP11-1099E10, com... 42 1.9
30emb|AL954838.14| Zebrafish DNA sequence from clone DKEY-12B15 in... 42 1.9
31gb|AC111028.10| Mus musculus chromosome 8, clone RP23-221P20, co... 40 7.5
32gb|AC114657.8| Mus musculus chromosome 5, clone RP24-161C20, com... 40 7.5
33emb|BX640401.2| Chicken DNA sequence from clone WAG-106I4, compl... 40 7.5
34gb|AC137119.7| Mus musculus chromosome 6, clone RP23-252K4, comp... 40 7.5
35emb|CR931814.13| Zebrafish DNA sequence from clone DKEY-236E8 in... 40 7.5
36ref|XM_503557.1| Yarrowia lipolytica CLIB122, YALI0E04785g predi... 40 7.5
37emb|AL035690.10|HS202I21 Human DNA sequence from clone RP1-202I2... 40 7.5
38emb|BX088597.18| Zebrafish DNA sequence from clone DKEY-171P23 i... 40 7.5
39emb|CR627244.1| Homo sapiens mRNA; cDNA DKFZp781B2319 (from clon... 40 7.5
40dbj|AK124992.1| Homo sapiens cDNA FLJ43002 fis, clone BRTHA2013054 40 7.5
41dbj|AK024286.1| Homo sapiens cDNA FLJ14224 fis, clone NT2RP3004028 40 7.5
42gb|AC098565.3| Oryza sativa chromosome 10 clone OSJNBa0028C16, c... 40 7.5
43gb|AC010388.6| Homo sapiens chromosome 5 clone CTD-2075D11, comp... 40 7.5
44gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chr... 40 7.5
45dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
46gb|AC092162.3| Homo sapiens BAC clone RP11-632P5 from 2, complet... 40 7.5
47emb|BX001023.12| Zebrafish DNA sequence from clone CH211-233F10 ... 40 7.5
48gb|AC114614.9| Mus musculus chromosome 5, clone RP24-81J14, comp... 40 7.5
49gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. F... 40 7.5
50gb|AC117804.7| Mus musculus chromosome 8, clone RP24-565N9, comp... 40 7.5
51gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.5
52emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB ... 40 7.5
53gb|CP000034.1| Shigella dysenteriae Sd197, complete genome 40 7.5
54emb|AL806523.14| Mouse DNA sequence from clone RP23-423O7 on chr... 40 7.5 
>gb|AF262215.1| Oryza sativa guanine nucleotide-exchange protein GEP2 (GEP2) mRNA,
            partial cds
          Length = 5678

 Score =  272 bits (137), Expect = 1e-69
 Identities = 250/286 (87%), Gaps = 5/286 (1%)
 Strand = Plus / Minus

                                                                        
Query: 275  caaagaataacttacatgtggagggtatactatatcacag----ggtgcttcacatcagc 330
            |||||||||||||||||||||||  |||||||||| ||||    || |||   |||||||
Sbjct: 5440 caaagaataacttacatgtggaga-tatactatataacagatatggggctcagcatcagc 5382

                                                                        
Query: 331  aggactgaagcacgattgggccaacccaagtgctgaacatatcactcaaggccacctgca 390
            |||  ||||| || |  ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 5381 aggtttgaagaacaaccgggccaacccaagtgctaaacatatcactcaatgccacctgca 5322

                                                                        
Query: 391  cttcgcctgaaccatgctcacaactgatgagaccagctagtagggggaagaactggccaa 450
            |||||| ||||||||| || ||||| || |||||||| || |||||||||||||||||||
Sbjct: 5321 cttcgcttgaaccatgttcgcaacttatcagaccagcaagaagggggaagaactggccaa 5262

                                                                        
Query: 451  ggttcttctcgaacgatgagtcgccgagaccgctgatagcttgcaatgttgagacaacaa 510
            ||||||||||||| |||||||| || || || |||||||||||||| |||||||||||||
Sbjct: 5261 ggttcttctcgaaagatgagtcaccaaggccactgatagcttgcaaggttgagacaacaa 5202

                                                          
Query: 511  gcggtgccctggctgcaagctctctccgctttgacgaaccaaccgg 556
            | ||||||| |||||||||||||||||||||||| ||||| |||||
Sbjct: 5201 gaggtgcccgggctgcaagctctctccgctttgaagaaccgaccgg 5156
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  264 bits (133), Expect = 3e-67
 Identities = 249/286 (87%), Gaps = 5/286 (1%)
 Strand = Plus / Plus

                                                                           
Query: 275     caaagaataacttacatgtggagggtatactatatcacag----ggtgcttcacatcagc 330
               |||| ||||||||||||||||| | |||||||||| ||||    || |||   |||||||
Sbjct: 7724572 caaataataacttacatgtgga-gatatactatataacagatatggggctcagcatcagc 7724630

                                                                           
Query: 331     aggactgaagcacgattgggccaacccaagtgctgaacatatcactcaaggccacctgca 390
               |||  ||||| || |  ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 7724631 aggtttgaagaacaaccgggccaacccaagtgctaaacatatcactcaatgccacctgca 7724690

                                                                           
Query: 391     cttcgcctgaaccatgctcacaactgatgagaccagctagtagggggaagaactggccaa 450
               |||||| ||||||||| || ||||| || |||||||| || |||||||||||||||||||
Sbjct: 7724691 cttcgcttgaaccatgttcgcaacttatcagaccagcaagaagggggaagaactggccaa 7724750

                                                                           
Query: 451     ggttcttctcgaacgatgagtcgccgagaccgctgatagcttgcaatgttgagacaacaa 510
               ||||||||||||| |||||||| || || || |||||||||||||| |||||||||||||
Sbjct: 7724751 ggttcttctcgaaagatgagtcaccaaggccactgatagcttgcaaggttgagacaacaa 7724810

                                                             
Query: 511     gcggtgccctggctgcaagctctctccgctttgacgaaccaaccgg 556
               | ||||||| |||||||||||||||||||||||| ||||| |||||
Sbjct: 7724811 gaggtgcccgggctgcaagctctctccgctttgaagaaccgaccgg 7724856
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  264 bits (133), Expect = 3e-67
 Identities = 249/286 (87%), Gaps = 5/286 (1%)
 Strand = Plus / Plus

                                                                           
Query: 275     caaagaataacttacatgtggagggtatactatatcacag----ggtgcttcacatcagc 330
               |||| ||||||||||||||||| | |||||||||| ||||    || |||   |||||||
Sbjct: 7722407 caaataataacttacatgtgga-gatatactatataacagatatggggctcagcatcagc 7722465

                                                                           
Query: 331     aggactgaagcacgattgggccaacccaagtgctgaacatatcactcaaggccacctgca 390
               |||  ||||| || |  ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 7722466 aggtttgaagaacaaccgggccaacccaagtgctaaacatatcactcaatgccacctgca 7722525

                                                                           
Query: 391     cttcgcctgaaccatgctcacaactgatgagaccagctagtagggggaagaactggccaa 450
               |||||| ||||||||| || ||||| || |||||||| || |||||||||||||||||||
Sbjct: 7722526 cttcgcttgaaccatgttcgcaacttatcagaccagcaagaagggggaagaactggccaa 7722585

                                                                           
Query: 451     ggttcttctcgaacgatgagtcgccgagaccgctgatagcttgcaatgttgagacaacaa 510
               ||||||||||||| |||||||| || || || |||||||||||||| |||||||||||||
Sbjct: 7722586 ggttcttctcgaaagatgagtcaccaaggccactgatagcttgcaaggttgagacaacaa 7722645

                                                             
Query: 511     gcggtgccctggctgcaagctctctccgctttgacgaaccaaccgg 556
               | ||||||| |||||||||||||||||||||||| ||||| |||||
Sbjct: 7722646 gaggtgcccgggctgcaagctctctccgctttgaagaaccgaccgg 7722691
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>gb|AC118672.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0078P24, from chromosome 3, complete sequence
          Length = 146930

 Score =  264 bits (133), Expect = 3e-67
 Identities = 249/286 (87%), Gaps = 5/286 (1%)
 Strand = Plus / Minus

                                                                          
Query: 275    caaagaataacttacatgtggagggtatactatatcacag----ggtgcttcacatcagc 330
              |||| ||||||||||||||||| | |||||||||| ||||    || |||   |||||||
Sbjct: 128222 caaataataacttacatgtgga-gatatactatataacagatatggggctcagcatcagc 128164

                                                                          
Query: 331    aggactgaagcacgattgggccaacccaagtgctgaacatatcactcaaggccacctgca 390
              |||  ||||| || |  ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 128163 aggtttgaagaacaaccgggccaacccaagtgctaaacatatcactcaatgccacctgca 128104

                                                                          
Query: 391    cttcgcctgaaccatgctcacaactgatgagaccagctagtagggggaagaactggccaa 450
              |||||| ||||||||| || ||||| || |||||||| || |||||||||||||||||||
Sbjct: 128103 cttcgcttgaaccatgttcgcaacttatcagaccagcaagaagggggaagaactggccaa 128044

                                                                          
Query: 451    ggttcttctcgaacgatgagtcgccgagaccgctgatagcttgcaatgttgagacaacaa 510
              ||||||||||||| |||||||| || || || |||||||||||||| |||||||||||||
Sbjct: 128043 ggttcttctcgaaagatgagtcaccaaggccactgatagcttgcaaggttgagacaacaa 127984

                                                            
Query: 511    gcggtgccctggctgcaagctctctccgctttgacgaaccaaccgg 556
              | ||||||| |||||||||||||||||||||||| ||||| |||||
Sbjct: 127983 gaggtgcccgggctgcaagctctctccgctttgaagaaccgaccgg 127938
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>dbj|AK119229.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-101-A10, full
            insert sequence
          Length = 1360

 Score =  256 bits (129), Expect = 7e-65
 Identities = 248/286 (86%), Gaps = 5/286 (1%)
 Strand = Plus / Minus

                                                                        
Query: 275  caaagaataacttacatgtggagggtatactatatcacag----ggtgcttcacatcagc 330
            |||| ||||||||||||||||| | |||||||||| ||||    || |||   |||||||
Sbjct: 1147 caaataataacttacatgtgga-gatatactatataacagatatggggctcagcatcagc 1089

                                                                        
Query: 331  aggactgaagcacgattgggccaacccaagtgctgaacatatcactcaaggccacctgca 390
            |||  ||||| || |  ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 1088 aggtttgaagaacaaccgggccaacccaagtgctaaacatatcactcaatgccacctgca 1029

                                                                        
Query: 391  cttcgcctgaaccatgctcacaactgatgagaccagctagtagggggaagaactggccaa 450
            |||||| ||| ||||| || ||||| || |||||||| || |||||||||||||||||||
Sbjct: 1028 cttcgcttgagccatgttcgcaacttatcagaccagcaagaagggggaagaactggccaa 969

                                                                        
Query: 451  ggttcttctcgaacgatgagtcgccgagaccgctgatagcttgcaatgttgagacaacaa 510
            ||||||||||||| |||||||| || || || |||||||||||||| |||||||||||||
Sbjct: 968  ggttcttctcgaaagatgagtcaccaaggccactgatagcttgcaaggttgagacaacaa 909

                                                          
Query: 511  gcggtgccctggctgcaagctctctccgctttgacgaaccaaccgg 556
            | ||||||| |||||||||||||||||||||||| ||||| |||||
Sbjct: 908  gaggtgcccgggctgcaagctctctccgctttgaagaaccgaccgg 863
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>dbj|AK068209.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149H23, full
            insert sequence
          Length = 2574

 Score =  256 bits (129), Expect = 7e-65
 Identities = 189/209 (90%)
 Strand = Plus / Minus

                                                                        
Query: 348  gggccaacccaagtgctgaacatatcactcaaggccacctgcacttcgcctgaaccatgc 407
            ||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||| 
Sbjct: 2403 gggccaacccaagtgctaaacatatcactcaatgccacctgcacttcgcttgaaccatgt 2344

                                                                        
Query: 408  tcacaactgatgagaccagctagtagggggaagaactggccaaggttcttctcgaacgat 467
            || ||||| || |||||||| || |||||||||||||||||||||||||||||||| |||
Sbjct: 2343 tcgcaacttatcagaccagcaagaagggggaagaactggccaaggttcttctcgaaagat 2284

                                                                        
Query: 468  gagtcgccgagaccgctgatagcttgcaatgttgagacaacaagcggtgccctggctgca 527
            ||||| || || || |||||||||||||| |||||||||||||| ||||||| |||||||
Sbjct: 2283 gagtcaccaaggccactgatagcttgcaaggttgagacaacaagaggtgcccgggctgca 2224

                                         
Query: 528  agctctctccgctttgacgaaccaaccgg 556
            ||||||| ||||||||| ||||| |||||
Sbjct: 2223 agctctccccgctttgaagaaccgaccgg 2195
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>gb|AY110856.1| Zea mays CL42523_1 mRNA sequence
          Length = 826

 Score =  178 bits (90), Expect = 1e-41
 Identities = 168/194 (86%)
 Strand = Plus / Minus

                                                                       
Query: 324 catcagcaggactgaagcacgattgggccaacccaagtgctgaacatatcactcaaggcc 383
           |||||||||||||| || |||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 641 catcagcaggactggagaacgagtgggccaacccaagtgctgaacatatcactcagggcc 582

                                                                       
Query: 384 acctgcacttcgcctgaaccatgctcacaactgatgagaccagctagtagggggaagaac 443
           ||||| ||||| |  ||||||||||| || || ||||| ||||| || || || ||||||
Sbjct: 581 acctgtacttcactagaaccatgctcgcagcttatgagcccagcgagaagaggaaagaac 522

                                                                       
Query: 444 tggccaaggttcttctcgaacgatgagtcgccgagaccgctgatagcttgcaatgttgag 503
           |||| ||||||||||||||| | |||||| || || ||||||||||||||||  ||||||
Sbjct: 521 tggcgaaggttcttctcgaaagctgagtcacctagtccgctgatagcttgcagggttgag 462

                         
Query: 504 acaacaagcggtgc 517
           ||| |||| |||||
Sbjct: 461 acaccaagaggtgc 448
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>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold
          Length = 1996640

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 148     aaaagggaaaaggatctacatg 169
               ||||||||||||||||||||||
Sbjct: 1935552 aaaagggaaaaggatctacatg 1935531
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>gb|AC145184.3| Macropus eugenii clone ME_KBa-71M6, complete sequence
          Length = 137074

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 148   aaaagggaaaaggatctacatg 169
             ||||||||||||||||||||||
Sbjct: 75986 aaaagggaaaaggatctacatg 75965
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>gb|AC146539.2| Gasterosteus aculeatus clone CH213-129C17, complete sequence
          Length = 202686

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 415   tgatgagaccagctagtaggg 435
             |||||||||||||||||||||
Sbjct: 89507 tgatgagaccagctagtaggg 89527
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>gb|AC145141.2| Homo sapiens chromosome 5 clone RP11-1364K7, complete sequence
          Length = 163257

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 358    aagtgctgaacatatcactca 378
              |||||||||||||||||||||
Sbjct: 155109 aagtgctgaacatatcactca 155089
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>gb|AC146690.1| Gasterosteus aculeatus clone CH213-156J22, complete sequence
          Length = 166930

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 415   tgatgagaccagctagtaggg 435
             |||||||||||||||||||||
Sbjct: 60182 tgatgagaccagctagtaggg 60202
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>gb|AC139492.2| Homo sapiens chromosome 5 clone RP11-842C12, complete sequence
          Length = 184826

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 358    aagtgctgaacatatcactca 378
              |||||||||||||||||||||
Sbjct: 178615 aagtgctgaacatatcactca 178595
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>gb|AC138908.3| Homo sapiens chromosome 5 clone RP11-615D2, complete sequence
          Length = 201419

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 358    aagtgctgaacatatcactca 378
              |||||||||||||||||||||
Sbjct: 148996 aagtgctgaacatatcactca 149016
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>gb|AC009780.12| Homo sapiens 12 BAC RP11-1C11 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 144454

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 202   ggactaaaataatgaacacaa 222
             |||||||||||||||||||||
Sbjct: 71327 ggactaaaataatgaacacaa 71307
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>gb|AC092361.3| Homo sapiens chromosome 5 clone RP11-356O21, complete sequence
          Length = 166133

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 358   aagtgctgaacatatcactca 378
             |||||||||||||||||||||
Sbjct: 83557 aagtgctgaacatatcactca 83577
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>gb|AC008851.7| Homo sapiens chromosome 5 clone CTD-2173D20, complete sequence
          Length = 130416

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 358    aagtgctgaacatatcactca 378
              |||||||||||||||||||||
Sbjct: 129642 aagtgctgaacatatcactca 129662
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>ref|XM_679956.1| PREDICTED: Danio rerio similar to synaptonemal complex lateral
            element protein (LOC557000), mRNA
          Length = 5163

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 132  agaaaaccaagagcataaaag 152
            |||||||||||||||||||||
Sbjct: 1577 agaaaaccaagagcataaaag 1597
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>ref|XM_691301.1| PREDICTED: Danio rerio similar to Synaptonemal complex protein 2
            (SCP-2 protein) (Synaptonemal complex lateral element
            protein) (hsSCP2) (LOC567990), mRNA
          Length = 4629

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 132  agaaaaccaagagcataaaag 152
            |||||||||||||||||||||
Sbjct: 1043 agaaaaccaagagcataaaag 1063
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>gb|AC090811.5| Homo sapiens chromosome 8, clone RP11-55J5, complete sequence
          Length = 176418

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 139    caagagcataaaagggaaaag 159
              |||||||||||||||||||||
Sbjct: 127063 caagagcataaaagggaaaag 127043
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>gb|AC101685.9| Mus musculus chromosome 5, clone RP23-187K3, complete sequence
          Length = 185522

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 79    atactaaggcatatataattt 99
             |||||||||||||||||||||
Sbjct: 88172 atactaaggcatatataattt 88192
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>emb|AL929345.15| Zebrafish DNA sequence from clone DKEY-211H10 in linkage group 23,
             complete sequence
          Length = 222615

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 132   agaaaaccaagagcataaaag 152
             |||||||||||||||||||||
Sbjct: 67452 agaaaaccaagagcataaaag 67432
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>gb|AC138850.2| Homo sapiens chromosome 5 clone RP11-1308P14, complete sequence
          Length = 188885

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 358   aagtgctgaacatatcactca 378
             |||||||||||||||||||||
Sbjct: 53920 aagtgctgaacatatcactca 53940
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>gb|AC138832.2| Homo sapiens chromosome 5 clone RP11-1174L13, complete sequence
          Length = 225384

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 358   aagtgctgaacatatcactca 378
             |||||||||||||||||||||
Sbjct: 57948 aagtgctgaacatatcactca 57928
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>gb|AC138828.2| Homo sapiens chromosome 5 clone RP11-1156J4, complete sequence
          Length = 184142

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 358    aagtgctgaacatatcactca 378
              |||||||||||||||||||||
Sbjct: 127788 aagtgctgaacatatcactca 127808
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>gb|AC108106.4| Homo sapiens chromosome 5 clone RP11-214M1, complete sequence
          Length = 160701

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 358    aagtgctgaacatatcactca 378
              |||||||||||||||||||||
Sbjct: 107633 aagtgctgaacatatcactca 107613
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>gb|AC138948.2| Homo sapiens chromosome 5 clone RP11-800G17, complete sequence
          Length = 172404

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 358    aagtgctgaacatatcactca 378
              |||||||||||||||||||||
Sbjct: 141777 aagtgctgaacatatcactca 141797
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>gb|AC138854.2| Homo sapiens chromosome 5 clone RP11-1330D14, complete sequence
          Length = 203368

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 358    aagtgctgaacatatcactca 378
              |||||||||||||||||||||
Sbjct: 118873 aagtgctgaacatatcactca 118893
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>gb|AC138817.2| Homo sapiens chromosome 5 clone RP11-1099E10, complete sequence
          Length = 185785

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 358    aagtgctgaacatatcactca 378
              |||||||||||||||||||||
Sbjct: 124323 aagtgctgaacatatcactca 124343
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>emb|AL954838.14| Zebrafish DNA sequence from clone DKEY-12B15 in linkage group 23,
             complete sequence
          Length = 268324

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 132   agaaaaccaagagcataaaag 152
             |||||||||||||||||||||
Sbjct: 78226 agaaaaccaagagcataaaag 78206
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>gb|AC111028.10| Mus musculus chromosome 8, clone RP23-221P20, complete sequence
          Length = 193256

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 323 acatcagcaggactgaagca 342
           ||||||||||||||||||||
Sbjct: 58  acatcagcaggactgaagca 77
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>gb|AC114657.8| Mus musculus chromosome 5, clone RP24-161C20, complete sequence
          Length = 161173

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   aatcatcttgtaacatacac 119
             ||||||||||||||||||||
Sbjct: 16852 aatcatcttgtaacatacac 16833
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>emb|BX640401.2| Chicken DNA sequence from clone WAG-106I4, complete sequence
          Length = 104753

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 45   tccaaagcagaactgctcaa 64
            ||||||||||||||||||||
Sbjct: 6867 tccaaagcagaactgctcaa 6848
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>gb|AC137119.7| Mus musculus chromosome 6, clone RP23-252K4, complete sequence
          Length = 226354

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    taaggcatatataatttaat 102
             ||||||||||||||||||||
Sbjct: 84896 taaggcatatataatttaat 84915
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>emb|CR931814.13| Zebrafish DNA sequence from clone DKEY-236E8 in linkage group 5,
             complete sequence
          Length = 155089

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    actatactaaggcatatata 95
             ||||||||||||||||||||
Sbjct: 91180 actatactaaggcatatata 91161
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>ref|XM_503557.1| Yarrowia lipolytica CLIB122, YALI0E04785g predicted mRNA
          Length = 1152

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 46  ccaaagcagaactgctcaat 65
           ||||||||||||||||||||
Sbjct: 605 ccaaagcagaactgctcaat 586
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>emb|AL035690.10|HS202I21 Human DNA sequence from clone RP1-202I21 on chromosome 6p21.1-21.2
             Contains a novel gene (FLJ11101, DKFZp434H012), a
             pseudogene similar to part of breast cancer antigen
             NY-BR-1,  the GLP1R gene for glucagon-like peptide 1
             receptor, a 40S ribosomal protein S2 (RPS2) pseudogene,
             the 3' part of the DNAH8 gene for dynein axonemal heavy
             polypeptide 8 and CpG islands, complete sequence
          Length = 142665

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    acaaacatccaaagcagaac 57
             ||||||||||||||||||||
Sbjct: 34224 acaaacatccaaagcagaac 34205
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>emb|BX088597.18| Zebrafish DNA sequence from clone DKEY-171P23 in linkage group 5,
              complete sequence
          Length = 172098

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 76     actatactaaggcatatata 95
              ||||||||||||||||||||
Sbjct: 116128 actatactaaggcatatata 116109
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>emb|CR627244.1| Homo sapiens mRNA; cDNA DKFZp781B2319 (from clone DKFZp781B2319)
          Length = 5193

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 38   acaaacatccaaagcagaac 57
            ||||||||||||||||||||
Sbjct: 2633 acaaacatccaaagcagaac 2614
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>dbj|AK124992.1| Homo sapiens cDNA FLJ43002 fis, clone BRTHA2013054
          Length = 3547

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 38   acaaacatccaaagcagaac 57
            ||||||||||||||||||||
Sbjct: 1003 acaaacatccaaagcagaac 984
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>dbj|AK024286.1| Homo sapiens cDNA FLJ14224 fis, clone NT2RP3004028
          Length = 3210

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 38  acaaacatccaaagcagaac 57
           ||||||||||||||||||||
Sbjct: 494 acaaacatccaaagcagaac 475
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>gb|AC098565.3| Oryza sativa chromosome 10 clone OSJNBa0028C16, complete sequence
          Length = 166757

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 130   gtagaaaaccaagagcataaaagg 153
             ||||||||| ||||||||||||||
Sbjct: 41143 gtagaaaactaagagcataaaagg 41166
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>gb|AC010388.6| Homo sapiens chromosome 5 clone CTD-2075D11, complete sequence
          Length = 159766

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 38   acaaacatccaaagcagaac 57
            ||||||||||||||||||||
Sbjct: 8446 acaaacatccaaagcagaac 8465
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>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete
               sequence
          Length = 4332241

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 209     aataatgaacacaacgaaat 228
               ||||||||||||||||||||
Sbjct: 3631100 aataatgaacacaacgaaat 3631081
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 130     gtagaaaaccaagagcataaaagg 153
               ||||||||| ||||||||||||||
Sbjct: 3071511 gtagaaaactaagagcataaaagg 3071534
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>gb|AC092162.3| Homo sapiens BAC clone RP11-632P5 from 2, complete sequence
          Length = 155011

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 185   gacaccacttcccacaaggactaaaataatga 216
             ||||| |||||||| ||| |||||||||||||
Sbjct: 64312 gacacaacttcccaaaagtactaaaataatga 64343
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>emb|BX001023.12| Zebrafish DNA sequence from clone CH211-233F10 in linkage group 5,
             complete sequence
          Length = 168064

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    actatactaaggcatatata 95
             ||||||||||||||||||||
Sbjct: 41233 actatactaaggcatatata 41252
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>gb|AC114614.9| Mus musculus chromosome 5, clone RP24-81J14, complete sequence
          Length = 206921

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   aatcatcttgtaacatacac 119
             ||||||||||||||||||||
Sbjct: 18236 aatcatcttgtaacatacac 18255
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>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130,
              chromosome I, complete sequence
          Length = 4277185

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 209    aataatgaacacaacgaaat 228
              ||||||||||||||||||||
Sbjct: 659706 aataatgaacacaacgaaat 659725
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>gb|AC117804.7| Mus musculus chromosome 8, clone RP24-565N9, complete sequence
          Length = 126486

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 323   acatcagcaggactgaagca 342
             ||||||||||||||||||||
Sbjct: 13770 acatcagcaggactgaagca 13751
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 130     gtagaaaaccaagagcataaaagg 153
               ||||||||| ||||||||||||||
Sbjct: 3071432 gtagaaaactaagagcataaaagg 3071455
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>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia
              lipolytica
          Length = 4224103

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 46     ccaaagcagaactgctcaat 65
              ||||||||||||||||||||
Sbjct: 538009 ccaaagcagaactgctcaat 537990
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>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome
          Length = 4369232

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 346    ttgggccaacccaagtgctgaaca 369
              |||| |||||||||||||||||||
Sbjct: 734155 ttggcccaacccaagtgctgaaca 734178
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>emb|AL806523.14| Mouse DNA sequence from clone RP23-423O7 on chromosome 4, complete
              sequence
          Length = 217762

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 92     tataatttaatcatcttgta 111
              ||||||||||||||||||||
Sbjct: 212725 tataatttaatcatcttgta 212744


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,019,542
Number of Sequences: 3902068
Number of extensions: 5019542
Number of successful extensions: 88038
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87755
Number of HSP's gapped (non-prelim): 283
length of query: 556
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 533
effective length of database: 17,143,297,704
effective search space: 9137377676232
effective search space used: 9137377676232
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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