ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags11m03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_187682.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1101 Score = 347 bits (175), Expect = 3e-92 Identities = 281/315 (89%), Gaps = 1/315 (0%) Strand = Plus / Minus Query: 371 tttcgtagaagagtatgtagccgttgtcggtgttaccactgaactcctgtgccgagccga 430 |||| |||||||||||||||||||| || ||||||||||||||||| ||||| ||||| | Sbjct: 1081 tttcatagaagagtatgtagccgttatcagtgttaccactgaactcttgtgctgagccaa 1022 Query: 431 agaatgtctgtaccatggactcatcggtcatctcaacagtctcgtcgtcgaagaacaacc 490 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct: 1021 agaatgtctgtaccatggactcatcagtcatctcaacattctcgtcgtcgaagaacaacc 962 Query: 491 agtggttgtggctcttgaccacgctgatgtagtggccgtgatttggcccacttccaacgt 550 |||||||||||||||| || | |||||| |||||||| |||||||| ||||||||||| | Sbjct: 961 agtggttgtggctcttcactaagctgatatagtggccatgatttggtccacttccaacat 902 Query: 551 ggactagcacggcgaagagggaatattccaagtctgaattgtcgaccgtgttcatgagtt 610 | |||||||| || || |||||||||||||||||||| ||||| || || || || |||| Sbjct: 901 gaactagcacagcaaaaagggaatattccaagtctgagttgtcaacagtattgataagtt 842 Query: 611 taagctccagcgggaaaacaactcggtatgtcagctttttgtagcggccgagctgcttcg 670 |||||||||| |||||||||||||| |||| |||||||||||||| || ||||| ||| Sbjct: 841 taagctccagagggaaaacaactcgatatgatagctttttgtagcgaccaagctg-ttca 783 Query: 671 atgtacttgaagcgc 685 || |||||||||||| Sbjct: 782 atatacttgaagcgc 768
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 347 bits (175), Expect = 3e-92 Identities = 281/315 (89%), Gaps = 1/315 (0%) Strand = Plus / Plus Query: 371 tttcgtagaagagtatgtagccgttgtcggtgttaccactgaactcctgtgccgagccga 430 |||| |||||||||||||||||||| || ||||||||||||||||| ||||| ||||| | Sbjct: 4697178 tttcatagaagagtatgtagccgttatcagtgttaccactgaactcttgtgctgagccaa 4697237 Query: 431 agaatgtctgtaccatggactcatcggtcatctcaacagtctcgtcgtcgaagaacaacc 490 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct: 4697238 agaatgtctgtaccatggactcatcagtcatctcaacattctcgtcgtcgaagaacaacc 4697297 Query: 491 agtggttgtggctcttgaccacgctgatgtagtggccgtgatttggcccacttccaacgt 550 |||||||||||||||| || | |||||| |||||||| |||||||| ||||||||||| | Sbjct: 4697298 agtggttgtggctcttcactaagctgatatagtggccatgatttggtccacttccaacat 4697357 Query: 551 ggactagcacggcgaagagggaatattccaagtctgaattgtcgaccgtgttcatgagtt 610 | |||||||| || || |||||||||||||||||||| ||||| || || || || |||| Sbjct: 4697358 gaactagcacagcaaaaagggaatattccaagtctgagttgtcaacagtattgataagtt 4697417 Query: 611 taagctccagcgggaaaacaactcggtatgtcagctttttgtagcggccgagctgcttcg 670 |||||||||| |||||||||||||| |||| |||||||||||||| || ||||| ||| Sbjct: 4697418 taagctccagagggaaaacaactcgatatgatagctttttgtagcgaccaagctg-ttca 4697476 Query: 671 atgtacttgaagcgc 685 || |||||||||||| Sbjct: 4697477 atatacttgaagcgc 4697491
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 347 bits (175), Expect = 3e-92 Identities = 281/315 (89%), Gaps = 1/315 (0%) Strand = Plus / Plus Query: 371 tttcgtagaagagtatgtagccgttgtcggtgttaccactgaactcctgtgccgagccga 430 |||| |||||||||||||||||||| || ||||||||||||||||| ||||| ||||| | Sbjct: 4697293 tttcatagaagagtatgtagccgttatcagtgttaccactgaactcttgtgctgagccaa 4697352 Query: 431 agaatgtctgtaccatggactcatcggtcatctcaacagtctcgtcgtcgaagaacaacc 490 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct: 4697353 agaatgtctgtaccatggactcatcagtcatctcaacattctcgtcgtcgaagaacaacc 4697412 Query: 491 agtggttgtggctcttgaccacgctgatgtagtggccgtgatttggcccacttccaacgt 550 |||||||||||||||| || | |||||| |||||||| |||||||| ||||||||||| | Sbjct: 4697413 agtggttgtggctcttcactaagctgatatagtggccatgatttggtccacttccaacat 4697472 Query: 551 ggactagcacggcgaagagggaatattccaagtctgaattgtcgaccgtgttcatgagtt 610 | |||||||| || || |||||||||||||||||||| ||||| || || || || |||| Sbjct: 4697473 gaactagcacagcaaaaagggaatattccaagtctgagttgtcaacagtattgataagtt 4697532 Query: 611 taagctccagcgggaaaacaactcggtatgtcagctttttgtagcggccgagctgcttcg 670 |||||||||| |||||||||||||| |||| |||||||||||||| || ||||| ||| Sbjct: 4697533 taagctccagagggaaaacaactcgatatgatagctttttgtagcgaccaagctg-ttca 4697591 Query: 671 atgtacttgaagcgc 685 || |||||||||||| Sbjct: 4697592 atatacttgaagcgc 4697606
>dbj|AK069100.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004H19, full insert sequence Length = 1597 Score = 347 bits (175), Expect = 3e-92 Identities = 281/315 (89%), Gaps = 1/315 (0%) Strand = Plus / Minus Query: 371 tttcgtagaagagtatgtagccgttgtcggtgttaccactgaactcctgtgccgagccga 430 |||| |||||||||||||||||||| || ||||||||||||||||| ||||| ||||| | Sbjct: 1260 tttcatagaagagtatgtagccgttatcagtgttaccactgaactcttgtgctgagccaa 1201 Query: 431 agaatgtctgtaccatggactcatcggtcatctcaacagtctcgtcgtcgaagaacaacc 490 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct: 1200 agaatgtctgtaccatggactcatcagtcatctcaacattctcgtcgtcgaagaacaacc 1141 Query: 491 agtggttgtggctcttgaccacgctgatgtagtggccgtgatttggcccacttccaacgt 550 |||||||||||||||| || | |||||| |||||||| |||||||| ||||||||||| | Sbjct: 1140 agtggttgtggctcttcactaagctgatatagtggccatgatttggtccacttccaacat 1081 Query: 551 ggactagcacggcgaagagggaatattccaagtctgaattgtcgaccgtgttcatgagtt 610 | |||||||| || || |||||||||||||||||||| ||||| || || || || |||| Sbjct: 1080 gaactagcacagcaaaaagggaatattccaagtctgagttgtcaacagtattgataagtt 1021 Query: 611 taagctccagcgggaaaacaactcggtatgtcagctttttgtagcggccgagctgcttcg 670 |||||||||| |||||||||||||| |||| |||||||||||||| || ||||| ||| Sbjct: 1020 taagctccagagggaaaacaactcgatatgatagctttttgtagcgaccaagctg-ttca 962 Query: 671 atgtacttgaagcgc 685 || |||||||||||| Sbjct: 961 atatacttgaagcgc 947
>gb|AC121489.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1217B09, complete sequence Length = 148894 Score = 347 bits (175), Expect = 3e-92 Identities = 281/315 (89%), Gaps = 1/315 (0%) Strand = Plus / Plus Query: 371 tttcgtagaagagtatgtagccgttgtcggtgttaccactgaactcctgtgccgagccga 430 |||| |||||||||||||||||||| || ||||||||||||||||| ||||| ||||| | Sbjct: 138133 tttcatagaagagtatgtagccgttatcagtgttaccactgaactcttgtgctgagccaa 138192 Query: 431 agaatgtctgtaccatggactcatcggtcatctcaacagtctcgtcgtcgaagaacaacc 490 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct: 138193 agaatgtctgtaccatggactcatcagtcatctcaacattctcgtcgtcgaagaacaacc 138252 Query: 491 agtggttgtggctcttgaccacgctgatgtagtggccgtgatttggcccacttccaacgt 550 |||||||||||||||| || | |||||| |||||||| |||||||| ||||||||||| | Sbjct: 138253 agtggttgtggctcttcactaagctgatatagtggccatgatttggtccacttccaacat 138312 Query: 551 ggactagcacggcgaagagggaatattccaagtctgaattgtcgaccgtgttcatgagtt 610 | |||||||| || || |||||||||||||||||||| ||||| || || || || |||| Sbjct: 138313 gaactagcacagcaaaaagggaatattccaagtctgagttgtcaacagtattgataagtt 138372 Query: 611 taagctccagcgggaaaacaactcggtatgtcagctttttgtagcggccgagctgcttcg 670 |||||||||| |||||||||||||| |||| |||||||||||||| || ||||| ||| Sbjct: 138373 taagctccagagggaaaacaactcgatatgatagctttttgtagcgaccaagctg-ttca 138431 Query: 671 atgtacttgaagcgc 685 || |||||||||||| Sbjct: 138432 atatacttgaagcgc 138446
>gb|BT018399.1| Zea mays clone EL01N0323A06.d mRNA sequence Length = 1503 Score = 218 bits (110), Expect = 2e-53 Identities = 242/286 (84%) Strand = Plus / Minus Query: 371 tttcgtagaagagtatgtagccgttgtcggtgttaccactgaactcctgtgccgagccga 430 |||| ||||||||||||||||| || || |||||||||||||||||||| | ||||| | Sbjct: 1157 tttcatagaagagtatgtagccattatcagtgttaccactgaactcctgcggtgagccaa 1098 Query: 431 agaatgtctgtaccatggactcatcggtcatctcaacagtctcgtcgtcgaagaacaacc 490 |||||| ||| |||||||||||||| ||||||||||| ||||||| || ||||| |||| Sbjct: 1097 agaatgcctggaccatggactcatcagtcatctcaacgttctcgtcatcaaagaataacc 1038 Query: 491 agtggttgtggctcttgaccacgctgatgtagtggccgtgatttggcccacttccaacgt 550 | || ||||||||||| |||| ||||| |||||||| || ||||||||||||||||| | Sbjct: 1037 aatgattgtggctcttaaccaaactgatatagtggccatggtttggcccacttccaacat 978 Query: 551 ggactagcacggcgaagagggaatattccaagtctgaattgtcgaccgtgttcatgagtt 610 | |||| ||| || || ||||| || |||||||| ||||| || || || || | |||| Sbjct: 977 gaactaccacagcaaaaagggagtactccaagtccgaattatcaactgtattaagaagtt 918 Query: 611 taagctccagcgggaaaacaactcggtatgtcagctttttgtagcg 656 |||||||||| |||||||| |||||||||| |||||||||||||| Sbjct: 917 taagctccagtgggaaaaccactcggtatgatagctttttgtagcg 872
>gb|AY109971.1| Zea mays CL15956_1 mRNA sequence Length = 1420 Score = 190 bits (96), Expect = 4e-45 Identities = 216/256 (84%) Strand = Plus / Plus Query: 385 atgtagccgttgtcggtgttaccactgaactcctgtgccgagccgaagaatgtctgtacc 444 |||||||| || || |||||||||||||||||||| | ||||| ||||||| ||| ||| Sbjct: 329 atgtagccattatcagtgttaccactgaactcctgcggtgagccaaagaatgcctggacc 388 Query: 445 atggactcatcggtcatctcaacagtctcgtcgtcgaagaacaaccagtggttgtggctc 504 ||||||||||| ||||||||||| ||||||| || ||||| ||||| || ||||||||| Sbjct: 389 atggactcatcagtcatctcaacgttctcgtcatcaaagaataaccaatgattgtggctc 448 Query: 505 ttgaccacgctgatgtagtggccgtgatttggcccacttccaacgtggactagcacggcg 564 || |||| ||||| |||||||| || ||||||||||||||||| || |||| ||| ||| Sbjct: 449 ttaaccaaactgatatagtggccatggtttggcccacttccaacatgaactaccacagcg 508 Query: 565 aagagggaatattccaagtctgaattgtcgaccgtgttcatgagtttaagctccagcggg 624 || ||||| ||||||||||| ||||| || || || || | |||||||||||||| ||| Sbjct: 509 aaaagggagtattccaagtccgaattatcaactgtattaagaagtttaagctccagtggg 568 Query: 625 aaaacaactcggtatg 640 ||||| |||| ||||| Sbjct: 569 aaaaccactctgtatg 584
>gb|AY104984.1| Zea mays PCO121949 mRNA sequence Length = 1745 Score = 61.9 bits (31), Expect = 3e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 475 tcgtcgaagaacaaccagtggttgtggctcttgac 509 ||||||||||||||||||||||||||||| ||||| Sbjct: 1306 tcgtcgaagaacaaccagtggttgtggcttttgac 1272
>ref|XM_472684.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1098 Score = 56.0 bits (28), Expect = 2e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 478 tcgaagaacaaccagtggttgtggctcttgac 509 |||||||||||||||||||||||||| ||||| Sbjct: 971 tcgaagaacaaccagtggttgtggcttttgac 940
>emb|AL606615.4|OSJN00048 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086B14, complete sequence Length = 175698 Score = 56.0 bits (28), Expect = 2e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 478 tcgaagaacaaccagtggttgtggctcttgac 509 |||||||||||||||||||||||||| ||||| Sbjct: 146368 tcgaagaacaaccagtggttgtggcttttgac 146399
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 56.0 bits (28), Expect = 2e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 478 tcgaagaacaaccagtggttgtggctcttgac 509 |||||||||||||||||||||||||| ||||| Sbjct: 22542613 tcgaagaacaaccagtggttgtggcttttgac 22542644
>dbj|AK068069.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134H10, full insert sequence Length = 1735 Score = 56.0 bits (28), Expect = 2e-04 Identities = 31/32 (96%) Strand = Plus / Minus Query: 478 tcgaagaacaaccagtggttgtggctcttgac 509 |||||||||||||||||||||||||| ||||| Sbjct: 1337 tcgaagaacaaccagtggttgtggcttttgac 1306
>gb|BT014048.1| Lycopersicon esculentum clone 133145F, mRNA sequence Length = 1683 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 481 aagaacaaccagtggttgtggct 503 ||||||||||||||||||||||| Sbjct: 1055 aagaacaaccagtggttgtggct 1033
>ref|NM_111950.2| Arabidopsis thaliana structural molecule AT3G11130 mRNA, complete cds Length = 5785 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 661 agctgcttcgatgtacttgaag 682 |||||||||||||||||||||| Sbjct: 2488 agctgcttcgatgtacttgaag 2467
>gb|AC009991.5|ATAC009991 Arabidopsis thaliana chromosome III BAC F9F8 genomic sequence, complete sequence Length = 101284 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 661 agctgcttcgatgtacttgaag 682 |||||||||||||||||||||| Sbjct: 29797 agctgcttcgatgtacttgaag 29776
>gb|AC073395.6|AC073395 Arabidopsis thaliana chromosome 3 BAC F11B9 genomic sequence, complete sequence Length = 103517 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 661 agctgcttcgatgtacttgaag 682 |||||||||||||||||||||| Sbjct: 23483 agctgcttcgatgtacttgaag 23504
>gb|AC121805.3| Mus musculus BAC clone RP23-443L2 from chromosome 10, complete sequence Length = 194006 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 305 aaaggaaaaaactgtgttgct 325 ||||||||||||||||||||| Sbjct: 4723 aaaggaaaaaactgtgttgct 4703
>gb|AC155830.7| Mus musculus 10 BAC RP24-495I3 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 189267 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 305 aaaggaaaaaactgtgttgct 325 ||||||||||||||||||||| Sbjct: 166730 aaaggaaaaaactgtgttgct 166710
>gb|AC112949.9| Mus musculus chromosome 17, clone RP23-294D3, complete sequence Length = 169739 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 602 tcatgagtttaagctccagc 621 |||||||||||||||||||| Sbjct: 79872 tcatgagtttaagctccagc 79853
>gb|AC092588.2| Homo sapiens BAC clone RP11-44A12 from 2, complete sequence Length = 140401 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 ttcgaattattctaatttac 264 |||||||||||||||||||| Sbjct: 57058 ttcgaattattctaatttac 57077
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 tgccacaacggaaaacaacg 129 |||||||||||||||||||| Sbjct: 32950212 tgccacaacggaaaacaacg 32950231
>gb|AC177808.2| Pan troglodytes BAC clone CH251-703A9 from chromosome unknown, complete sequence Length = 207792 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 199 aaacaccgactccacaaaaa 218 |||||||||||||||||||| Sbjct: 58302 aaacaccgactccacaaaaa 58321
>dbj|AP003224.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0010B10 Length = 155263 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 tgccacaacggaaaacaacg 129 |||||||||||||||||||| Sbjct: 16440 tgccacaacggaaaacaacg 16459
>gb|AC155884.2| Medicago truncatula chromosome 2 BAC clone mth2-10d10, complete sequence Length = 79222 Score = 40.1 bits (20), Expect = 9.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 atctcttcacatgatatgat 63 |||||||||||||||||||| Sbjct: 20390 atctcttcacatgatatgat 20409 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,665,959 Number of Sequences: 3902068 Number of extensions: 4665959 Number of successful extensions: 74546 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74424 Number of HSP's gapped (non-prelim): 120 length of query: 685 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 662 effective length of database: 17,143,297,704 effective search space: 11348863080048 effective search space used: 11348863080048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
