ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags12b01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK105855.1| Oryza sativa (japonica cultivar-group) cDNA clon... 252 5e-64
2dbj|AK072614.1| Oryza sativa (japonica cultivar-group) cDNA clon... 252 5e-64
3dbj|AK060016.1| Oryza sativa (japonica cultivar-group) cDNA clon... 252 5e-64
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 186 3e-44
5dbj|AP004749.2| Oryza sativa (japonica cultivar-group) genomic D... 186 3e-44
6gb|BT018206.1| Zea mays clone EL01N0560B10.c mRNA sequence 96 8e-17
7ref|XM_516525.1| PREDICTED: Pan troglodytes similar to protein k... 40 3.9
8ref|NM_006254.3| Homo sapiens protein kinase C, delta (PRKCD), t... 40 3.9
9ref|NM_212539.1| Homo sapiens protein kinase C, delta (PRKCD), t... 40 3.9
10gb|BC043350.1| Homo sapiens protein kinase C, delta, transcript ... 40 3.9
11emb|AM040155.1| Equus caballus microsatellite DNA, locus ZuBeEq7 40 3.9
12emb|AL596165.1| Listeria innocua Clip11262 complete genome, segm... 40 3.9
13gb|AC023711.5| Drosophila melanogaster X BAC RP98-6C4 (Roswell P... 40 3.9
14gb|AC023685.4| Drosophila melanogaster 3L BAC RP98-20N12 (Roswel... 40 3.9
15emb|CR596063.1| full-length cDNA clone CS0DL009YH18 of B cells (... 40 3.9
16gb|AY335687.1| Synthetic construct Homo sapiens protein kinase C... 40 3.9
17gb|AF203327.1| Ambystoma tigrinum rod arrestin mRNA, complete cds 40 3.9
18dbj|AK130150.1| Homo sapiens cDNA FLJ26640 fis, clone MPE01823, ... 40 3.9
19gb|AE003491.4| Drosophila melanogaster chromosome X, section 43 ... 40 3.9
20gb|AE000657.1| Aquifex aeolicus VF5, complete genome 40 3.9
21gb|L07860.1|HUMPCKD13X Human protein kinase C-delta 13 mRNA, com... 40 3.9
22gb|L07861.1|HUMPKCD13Y Human protein kinase C-delta 13 mRNA, com... 40 3.9
23dbj|D10495.1|HUMPKSCD Homo sapiens mRNA for protein kinase C del... 40 3.9 
>dbj|AK105855.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-H05, full
            insert sequence
          Length = 1495

 Score =  252 bits (127), Expect = 5e-64
 Identities = 232/268 (86%), Gaps = 1/268 (0%)
 Strand = Plus / Minus

                                                                        
Query: 27   caacacaactcacacgcaaaaccattgctttggccagctcgagagccctttcccttccaa 86
            |||||||||||||| | || ||||| | |||||| |||||||  ||||| ||||  ||||
Sbjct: 1314 caacacaactcacatg-aagaccatggttttggcgagctcgacggccctctcccgaccaa 1256

                                                                        
Query: 87   agagcttctccacgatggcnagcgagaattccatggaagngcctggaccttggctagtga 146
            | ||||||||||||||||| || ||||| |||||||| | ||||||||||||||| ||||
Sbjct: 1255 acagcttctccacgatggcgagagagaactccatggatgtgcctggaccttggctggtga 1196

                                                                        
Query: 147  tcaggttgccatcnacgacgactctgttctcgcattcgctttggtccgngagtttgctcc 206
            | ||||||||||| ||||| || ||||||| ||||||||||||||||| ||| ||| |||
Sbjct: 1195 ttaggttgccatcaacgacaaccctgttcttgcattcgctttggtccgagagcttgttcc 1136

                                                                        
Query: 207  acatagcaggataagatgtanccttctttcccttcagcaggccatgtggctcaagggcaa 266
            ||||| ||||| | |||||| |||||||||||||||||||||||||||| |||||||| |
Sbjct: 1135 acataccaggaaaggatgtagccttctttcccttcagcaggccatgtggttcaagggcga 1076

                                        
Query: 267  ttgntggggaggcacatattgntccata 294
            ||| ||| ||||||||||| | ||||||
Sbjct: 1075 ttgctggcgaggcacatatagctccata 1048
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>dbj|AK072614.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133K03, full
            insert sequence
          Length = 1495

 Score =  252 bits (127), Expect = 5e-64
 Identities = 232/268 (86%), Gaps = 1/268 (0%)
 Strand = Plus / Minus

                                                                        
Query: 27   caacacaactcacacgcaaaaccattgctttggccagctcgagagccctttcccttccaa 86
            |||||||||||||| | || ||||| | |||||| |||||||  ||||| ||||  ||||
Sbjct: 1315 caacacaactcacatg-aagaccatggttttggcgagctcgacggccctctcccgaccaa 1257

                                                                        
Query: 87   agagcttctccacgatggcnagcgagaattccatggaagngcctggaccttggctagtga 146
            | ||||||||||||||||| || ||||| |||||||| | ||||||||||||||| ||||
Sbjct: 1256 acagcttctccacgatggcgagagagaactccatggatgtgcctggaccttggctggtga 1197

                                                                        
Query: 147  tcaggttgccatcnacgacgactctgttctcgcattcgctttggtccgngagtttgctcc 206
            | ||||||||||| ||||| || ||||||| ||||||||||||||||| ||| ||| |||
Sbjct: 1196 ttaggttgccatcaacgacaaccctgttcttgcattcgctttggtccgagagcttgttcc 1137

                                                                        
Query: 207  acatagcaggataagatgtanccttctttcccttcagcaggccatgtggctcaagggcaa 266
            ||||| ||||| | |||||| |||||||||||||||||||||||||||| |||||||| |
Sbjct: 1136 acataccaggaaaggatgtagccttctttcccttcagcaggccatgtggttcaagggcga 1077

                                        
Query: 267  ttgntggggaggcacatattgntccata 294
            ||| ||| ||||||||||| | ||||||
Sbjct: 1076 ttgctggcgaggcacatatagctccata 1049
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>dbj|AK060016.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-F09, full
           insert sequence
          Length = 1104

 Score =  252 bits (127), Expect = 5e-64
 Identities = 232/268 (86%), Gaps = 1/268 (0%)
 Strand = Plus / Minus

                                                                       
Query: 27  caacacaactcacacgcaaaaccattgctttggccagctcgagagccctttcccttccaa 86
           |||||||||||||| | || ||||| | |||||| |||||||  ||||| ||||  ||||
Sbjct: 880 caacacaactcacatg-aagaccatggttttggcgagctcgacggccctctcccgaccaa 822

                                                                       
Query: 87  agagcttctccacgatggcnagcgagaattccatggaagngcctggaccttggctagtga 146
           | ||||||||||||||||| || ||||| |||||||| | ||||||||||||||| ||||
Sbjct: 821 acagcttctccacgatggcgagagagaactccatggatgtgcctggaccttggctggtga 762

                                                                       
Query: 147 tcaggttgccatcnacgacgactctgttctcgcattcgctttggtccgngagtttgctcc 206
           | ||||||||||| ||||| || ||||||| ||||||||||||||||| ||| ||| |||
Sbjct: 761 ttaggttgccatcaacgacaaccctgttcttgcattcgctttggtccgagagcttgttcc 702

                                                                       
Query: 207 acatagcaggataagatgtanccttctttcccttcagcaggccatgtggctcaagggcaa 266
           ||||| ||||| | |||||| |||||||||||||||||||||||||||| |||||||| |
Sbjct: 701 acataccaggaaaggatgtagccttctttcccttcagcaggccatgtggttcaagggcga 642

                                       
Query: 267 ttgntggggaggcacatattgntccata 294
           ||| ||| ||||||||||| | ||||||
Sbjct: 641 ttgctggcgaggcacatatagctccata 614
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  186 bits (94), Expect = 3e-44
 Identities = 183/213 (85%), Gaps = 1/213 (0%)
 Strand = Plus / Plus

                                                                            
Query: 27       caacacaactcacacgcaaaaccattgctttggccagctcgagagccctttcccttccaa 86
                |||||||||||||| | || ||||| | |||||| |||||||  ||||| ||||  ||||
Sbjct: 19476920 caacacaactcacatg-aagaccatggttttggcgagctcgacggccctctcccgaccaa 19476978

                                                                            
Query: 87       agagcttctccacgatggcnagcgagaattccatggaagngcctggaccttggctagtga 146
                | ||||||||||||||||| || ||||| |||||||| | ||||||||||||||| ||||
Sbjct: 19476979 acagcttctccacgatggcgagagagaactccatggatgtgcctggaccttggctggtga 19477038

                                                                            
Query: 147      tcaggttgccatcnacgacgactctgttctcgcattcgctttggtccgngagtttgctcc 206
                | ||||||||||| ||||| || ||||||| ||||||||||||||||| ||| ||| |||
Sbjct: 19477039 ttaggttgccatcaacgacaaccctgttcttgcattcgctttggtccgagagcttgttcc 19477098

                                                 
Query: 207      acatagcaggataagatgtanccttctttccct 239
                ||||| ||||| | |||||| ||||||||||||
Sbjct: 19477099 acataccaggaaaggatgtagccttctttccct 19477131



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                          
Query: 237      ccttcagcaggccatgtggctcaagggcaattgntggggaggcacatattgntccata 294
                ||||||||||||||||||| |||||||| |||| ||| ||||||||||| | ||||||
Sbjct: 19477253 ccttcagcaggccatgtggttcaagggcgattgctggcgaggcacatatagctccata 19477310
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>dbj|AP004749.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0410C01
          Length = 138424

 Score =  186 bits (94), Expect = 3e-44
 Identities = 183/213 (85%), Gaps = 1/213 (0%)
 Strand = Plus / Plus

                                                                         
Query: 27    caacacaactcacacgcaaaaccattgctttggccagctcgagagccctttcccttccaa 86
             |||||||||||||| | || ||||| | |||||| |||||||  ||||| ||||  ||||
Sbjct: 95329 caacacaactcacatg-aagaccatggttttggcgagctcgacggccctctcccgaccaa 95387

                                                                         
Query: 87    agagcttctccacgatggcnagcgagaattccatggaagngcctggaccttggctagtga 146
             | ||||||||||||||||| || ||||| |||||||| | ||||||||||||||| ||||
Sbjct: 95388 acagcttctccacgatggcgagagagaactccatggatgtgcctggaccttggctggtga 95447

                                                                         
Query: 147   tcaggttgccatcnacgacgactctgttctcgcattcgctttggtccgngagtttgctcc 206
             | ||||||||||| ||||| || ||||||| ||||||||||||||||| ||| ||| |||
Sbjct: 95448 ttaggttgccatcaacgacaaccctgttcttgcattcgctttggtccgagagcttgttcc 95507

                                              
Query: 207   acatagcaggataagatgtanccttctttccct 239
             ||||| ||||| | |||||| ||||||||||||
Sbjct: 95508 acataccaggaaaggatgtagccttctttccct 95540



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                       
Query: 237   ccttcagcaggccatgtggctcaagggcaattgntggggaggcacatattgntccata 294
             ||||||||||||||||||| |||||||| |||| ||| ||||||||||| | ||||||
Sbjct: 95662 ccttcagcaggccatgtggttcaagggcgattgctggcgaggcacatatagctccata 95719
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>gb|BT018206.1| Zea mays clone EL01N0560B10.c mRNA sequence
          Length = 1356

 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 200/253 (79%)
 Strand = Plus / Minus

                                                                        
Query: 44   aaaaccattgctttggccagctcgagagccctttcccttccaaagagcttctccacgatg 103
            |||||||| | |||||||||||| || || || |||| ||||||||| |||||||| |||
Sbjct: 1263 aaaaccatggatttggccagctcaagggctctctcccgtccaaagagtttctccactatg 1204

                                                                        
Query: 104  gcnagcgagaattccatggaagngcctggaccttggctagtgatcaggttgccatcnacg 163
            || ||||| ||||||||  |||  || ||||||||| | | ||| ||||| ||||| || 
Sbjct: 1203 gcaagcgaaaattccataaaagtcccaggaccttgggtggggattaggttaccatcaaca 1144

                                                                        
Query: 164  acgactctgttctcgcattcgctttggtccgngagtttgctccacatagcaggataagat 223
            |  |||||||| | ||||||||||||| | |  |||||| ||||  |   |||| | |||
Sbjct: 1143 aaaactctgttgttgcattcgctttgggctgcaagtttgttccattttttaggaaaggat 1084

                                                                        
Query: 224  gtanccttctttcccttcagcaggccatgtggctcaagggcaattgntggggaggcacat 283
            | | | ||||||||||| || |||||||| || ||||  ||||| |  ||||||||||||
Sbjct: 1083 ggaactttctttccctttaggaggccatggggttcaaaagcaatcgcaggggaggcacat 1024

                         
Query: 284  attgntccataca 296
            || | ||||||||
Sbjct: 1023 atagctccataca 1011
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>ref|XM_516525.1| PREDICTED: Pan troglodytes similar to protein kinase C, delta
            (LOC460442), mRNA
          Length = 1916

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 76   ttcccttccaaagagcttctccacgatg 103
            ||||||| ||||||||||||||| ||||
Sbjct: 1541 ttccctttcaaagagcttctccaggatg 1514
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>ref|NM_006254.3| Homo sapiens protein kinase C, delta (PRKCD), transcript variant 1,
            mRNA
          Length = 2850

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 76   ttcccttccaaagagcttctccacgatg 103
            ||||||| ||||||||||||||| ||||
Sbjct: 2111 ttccctttcaaagagcttctccaggatg 2084
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>ref|NM_212539.1| Homo sapiens protein kinase C, delta (PRKCD), transcript variant 2,
            mRNA
          Length = 2738

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 76   ttcccttccaaagagcttctccacgatg 103
            ||||||| ||||||||||||||| ||||
Sbjct: 1999 ttccctttcaaagagcttctccaggatg 1972
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>gb|BC043350.1| Homo sapiens protein kinase C, delta, transcript variant 1, mRNA
            (cDNA clone MGC:49908 IMAGE:5539909), complete cds
          Length = 2693

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 76   ttcccttccaaagagcttctccacgatg 103
            ||||||| ||||||||||||||| ||||
Sbjct: 2130 ttccctttcaaagagcttctccaggatg 2103
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>emb|AM040155.1| Equus caballus microsatellite DNA, locus ZuBeEq7
          Length = 1659

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 132  gaccttggctagtgatcagg 151
            ||||||||||||||||||||
Sbjct: 1345 gaccttggctagtgatcagg 1364
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>emb|AL596165.1| Listeria innocua Clip11262 complete genome, segment 3/12
          Length = 249050

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     agccctttcccttccaaaga 89
              ||||||||||||||||||||
Sbjct: 188598 agccctttcccttccaaaga 188579
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>gb|AC023711.5| Drosophila melanogaster X BAC RP98-6C4 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 174157

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    acacaactcacacgcaaaac 48
             ||||||||||||||||||||
Sbjct: 70788 acacaactcacacgcaaaac 70769
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>gb|AC023685.4| Drosophila melanogaster 3L BAC RP98-20N12 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 167926

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     acacaactcacacgcaaaac 48
              ||||||||||||||||||||
Sbjct: 100202 acacaactcacacgcaaaac 100183
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>emb|CR596063.1| full-length cDNA clone CS0DL009YH18 of B cells (Ramos cell line)
           Cot 25-normalized of Homo sapiens (human)
          Length = 824

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 76  ttcccttccaaagagcttctccacgatg 103
           ||||||| ||||||||||||||| ||||
Sbjct: 100 ttccctttcaaagagcttctccaggatg 73
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>gb|AY335687.1| Synthetic construct Homo sapiens protein kinase C, delta (PRKCD)
            mRNA, partial cds
          Length = 2031

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 76   ttcccttccaaagagcttctccacgatg 103
            ||||||| ||||||||||||||| ||||
Sbjct: 1758 ttccctttcaaagagcttctccaggatg 1731
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>gb|AF203327.1| Ambystoma tigrinum rod arrestin mRNA, complete cds
          Length = 1897

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 228 ccttctttcccttcagcagg 247
           ||||||||||||||||||||
Sbjct: 302 ccttctttcccttcagcagg 283
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>dbj|AK130150.1| Homo sapiens cDNA FLJ26640 fis, clone MPE01823, highly similar to
            Protein kinase C, delta type (EC 2.7.1.-)
          Length = 1848

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 76   ttcccttccaaagagcttctccacgatg 103
            ||||||| ||||||||||||||| ||||
Sbjct: 1301 ttccctttcaaagagcttctccaggatg 1274
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>gb|AE003491.4| Drosophila melanogaster chromosome X, section 43 of 74 of the complete
              sequence
          Length = 332030

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     acacaactcacacgcaaaac 48
              ||||||||||||||||||||
Sbjct: 156887 acacaactcacacgcaaaac 156868
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>gb|AE000657.1| Aquifex aeolicus VF5, complete genome
          Length = 1551335

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 72      ccctttcccttccaaagagc 91
               ||||||||||||||||||||
Sbjct: 1467518 ccctttcccttccaaagagc 1467499
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>gb|L07860.1|HUMPCKD13X Human protein kinase C-delta 13 mRNA, complete cds
          Length = 2104

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 76   ttcccttccaaagagcttctccacgatg 103
            ||||||| ||||||||||||||| ||||
Sbjct: 1816 ttccctttcaaagagcttctccaggatg 1789
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>gb|L07861.1|HUMPKCD13Y Human protein kinase C-delta 13 mRNA, complete cds
          Length = 2104

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 76   ttcccttccaaagagcttctccacgatg 103
            ||||||| ||||||||||||||| ||||
Sbjct: 1816 ttccctttcaaagagcttctccaggatg 1789
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>dbj|D10495.1|HUMPKSCD Homo sapiens mRNA for protein kinase C delta-type, complete cds
          Length = 2163

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 76   ttcccttccaaagagcttctccacgatg 103
            ||||||| ||||||||||||||| ||||
Sbjct: 1617 ttccctttcaaagagcttctccaggatg 1590


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,736,055
Number of Sequences: 3902068
Number of extensions: 1736055
Number of successful extensions: 30180
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30140
Number of HSP's gapped (non-prelim): 35
length of query: 297
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 275
effective length of database: 17,147,199,772
effective search space: 4715479937300
effective search space used: 4715479937300
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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