ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags11m01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC136448.2| Oryza sativa (japonica cultivar-group) chromosome... 82 3e-12
2dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 82 3e-12
3dbj|AK067658.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 3e-12
4gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 82 3e-12
5dbj|AK071663.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 7e-10
6gb|AY108418.1| Zea mays PCO104228 mRNA sequence 50 0.010
7gb|AC005061.2| Homo sapiens BAC clone CTB-87E15 from 7, complete... 44 0.63
8gb|AC154740.2| Mus musculus BAC clone RP23-118I16 from chromosom... 44 0.63
9gb|AF467804.1| Tachypleus tridentatus factor C precursor, mRNA, ... 44 0.63
10gb|S77064.1| factor C=endotoxin-sensitive intracellular serine p... 44 0.63
11gb|S77063.1| factor C=endotoxin-sensitive intracellular serine p... 44 0.63
12gb|AC120132.11| Mus musculus chromosome 6, clone RP23-105D1, com... 44 0.63
13dbj|D90271.1|TATLFC1 Tachypleus tridentatus mRNA for limulus fac... 44 0.63
14gb|AC102794.8| Mus musculus chromosome 3, clone RP23-235G13, com... 42 2.5
15gb|AC120150.9| Mus musculus chromosome 16, clone RP24-241C15, co... 42 2.5
16gb|AC165944.3| Mus musculus chromosome 3, clone RP24-134A8, comp... 42 2.5
17gb|AC160757.3| Mus musculus chromosome 3, clone RP23-200C3, comp... 42 2.5
18gb|AC115778.11| Mus musculus chromosome 8, clone RP23-148F13, co... 42 2.5
19gb|AC154526.2| Mus musculus BAC clone RP24-69I14 from 16, comple... 42 2.5
20gb|AC119220.11| Mus musculus chromosome 1, clone RP24-201K16, co... 40 9.8
21gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome 40 9.8
22gb|AC104901.13| Mus musculus chromosome 1, clone RP24-404L18, co... 40 9.8
23gb|AC146014.2| Pan troglodytes BAC clone RP43-128N21 from 7, com... 40 9.8
24emb|AL627427.11| Human DNA sequence from clone RP11-350G11 on ch... 40 9.8
25emb|BX842654.1| Bdellovibrio bacteriovorus complete genome, stra... 40 9.8
26emb|CR376863.10| Zebrafish DNA sequence from clone DKEY-93F15 in... 40 9.8
27gb|AC142249.6| Mus musculus chromosome 19, clone RP23-388O22, co... 40 9.8
28gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 40 9.8
29emb|CR385171.1| Gallus gallus finished cDNA, clone ChEST539a1 40 9.8
30dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.8
31gb|AC175466.2| Gallus gallus BAC clone CH261-8A20 from chromosom... 40 9.8
32dbj|AP002861.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.8
33dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.8
34dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 9.8
35gb|AC122547.11| Mus musculus chromosome 1, clone RP23-76P20, com... 40 9.8
36dbj|AP002959.2| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 9.8
37dbj|AP001124.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 9.8
38gb|AC132449.4| Mus musculus BAC clone RP23-183J18 from 8, comple... 40 9.8
39gb|AC002507.1|AC002507 Human Cosmid g5129z132 from 7q31.3, compl... 40 9.8
40emb|CT009684.7| Mouse DNA sequence from clone RP23-127L21 on chr... 40 9.8
41emb|CT025520.10| Mouse DNA sequence from clone RP23-393E22 on ch... 40 9.8 
>gb|AC136448.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0077O14, complete sequence
          Length = 124915

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 110/133 (82%)
 Strand = Plus / Minus

                                                                         
Query: 205   atttcttttcatcgcctccaaactctgtagaattcccattccagaagacgtttctattat 264
             ||||||| || |||||||| ||||||||||||||||| |||||| | || || |||| ||
Sbjct: 78012 atttcttatcttcgcctccgaactctgtagaattcccgttccagtaaacattcctatcat 77953

                                                                         
Query: 265   cagatggatcttgttcttcactgtttagagtgtgaatgttgccaccgaactgtcggggcc 324
             |||||||  |||| || |||||  | | | |||||| |||||||||||| ||||  ||||
Sbjct: 77952 cagatgggccttggtcatcacttctcaaactgtgaacgttgccaccgaattgtctcggcc 77893

                          
Query: 325   gccttctcaaggt 337
             |||| ||||||||
Sbjct: 77892 gcctcctcaaggt 77880



 Score = 48.1 bits (24), Expect = 0.040
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                         
Query: 618   gcctggcgggtttcaatacccagctcatacaatgtggtttccat 661
             ||||| ||||||||||||||||| |||| ||| |||| ||||||
Sbjct: 77416 gcctgccgggtttcaatacccagttcatgcaacgtggcttccat 77373



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 461   atttcctctcaagtaggacaatggattcaca 491
             |||| ||||||||||||||| ||||||||||
Sbjct: 77591 atttgctctcaagtaggacagtggattcaca 77561
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 110/133 (82%)
 Strand = Plus / Plus

                                                                            
Query: 205      atttcttttcatcgcctccaaactctgtagaattcccattccagaagacgtttctattat 264
                ||||||| || |||||||| ||||||||||||||||| |||||| | || || |||| ||
Sbjct: 10637820 atttcttatcttcgcctccgaactctgtagaattcccgttccagtaaacattcctatcat 10637879

                                                                            
Query: 265      cagatggatcttgttcttcactgtttagagtgtgaatgttgccaccgaactgtcggggcc 324
                |||||||  |||| || |||||  | | | |||||| |||||||||||| ||||  ||||
Sbjct: 10637880 cagatgggccttggtcatcacttctcaaactgtgaacgttgccaccgaattgtctcggcc 10637939

                             
Query: 325      gccttctcaaggt 337
                |||| ||||||||
Sbjct: 10637940 gcctcctcaaggt 10637952



 Score = 48.1 bits (24), Expect = 0.040
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                            
Query: 618      gcctggcgggtttcaatacccagctcatacaatgtggtttccat 661
                ||||| ||||||||||||||||| |||| ||| |||| ||||||
Sbjct: 10638416 gcctgccgggtttcaatacccagttcatgcaacgtggcttccat 10638459



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                               
Query: 461      atttcctctcaagtaggacaatggattcaca 491
                |||| ||||||||||||||| ||||||||||
Sbjct: 10638241 atttgctctcaagtaggacagtggattcaca 10638271
to top
>dbj|AK067658.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013114I10, full
            insert sequence
          Length = 2068

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 110/133 (82%)
 Strand = Plus / Minus

                                                                        
Query: 205  atttcttttcatcgcctccaaactctgtagaattcccattccagaagacgtttctattat 264
            ||||||| || |||||||| ||||||||||||||||| |||||| | || || |||| ||
Sbjct: 1835 atttcttatcttcgcctccgaactctgtagaattcccgttccagtaaacattcctatcat 1776

                                                                        
Query: 265  cagatggatcttgttcttcactgtttagagtgtgaatgttgccaccgaactgtcggggcc 324
            |||||||  |||| || |||||  | | | |||||| |||||||||||| ||||  ||||
Sbjct: 1775 cagatgggccttggtcatcacttctcaaactgtgaacgttgccaccgaattgtctcggcc 1716

                         
Query: 325  gccttctcaaggt 337
            |||| ||||||||
Sbjct: 1715 gcctcctcaaggt 1703



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 77/89 (86%), Gaps = 1/89 (1%)
 Strand = Plus / Minus

                                                                        
Query: 618  gcctggcgggtttcaatacccagctcatacaatgtggtttccatatcttggttccgtgaa 677
            ||||| ||||||||||||||||| |||| ||| |||| |||||| |||| |||| |||||
Sbjct: 1368 gcctgccgggtttcaatacccagttcatgcaacgtggcttccatgtctt-gttcagtgaa 1310

                                         
Query: 678  cacttttttaggataaagcattgcaagat 706
             |||||| | ||||||||||| |||||||
Sbjct: 1309 aacttttcttggataaagcatagcaagat 1281



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 461  atttcctctcaagtaggacaatggattcaca 491
            |||| ||||||||||||||| ||||||||||
Sbjct: 1543 atttgctctcaagtaggacagtggattcaca 1513
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 110/133 (82%)
 Strand = Plus / Plus

                                                                            
Query: 205      atttcttttcatcgcctccaaactctgtagaattcccattccagaagacgtttctattat 264
                ||||||| || |||||||| ||||||||||||||||| |||||| | || || |||| ||
Sbjct: 10709364 atttcttatcttcgcctccgaactctgtagaattcccgttccagtaaacattcctatcat 10709423

                                                                            
Query: 265      cagatggatcttgttcttcactgtttagagtgtgaatgttgccaccgaactgtcggggcc 324
                |||||||  |||| || |||||  | | | |||||| |||||||||||| ||||  ||||
Sbjct: 10709424 cagatgggccttggtcatcacttctcaaactgtgaacgttgccaccgaattgtctcggcc 10709483

                             
Query: 325      gccttctcaaggt 337
                |||| ||||||||
Sbjct: 10709484 gcctcctcaaggt 10709496



 Score = 48.1 bits (24), Expect = 0.040
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                            
Query: 618      gcctggcgggtttcaatacccagctcatacaatgtggtttccat 661
                ||||| ||||||||||||||||| |||| ||| |||| ||||||
Sbjct: 10709960 gcctgccgggtttcaatacccagttcatgcaacgtggcttccat 10710003



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                               
Query: 461      atttcctctcaagtaggacaatggattcaca 491
                |||| ||||||||||||||| ||||||||||
Sbjct: 10709785 atttgctctcaagtaggacagtggattcaca 10709815
to top
>dbj|AK071663.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023106G11, full
            insert sequence
          Length = 1557

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 77/89 (86%), Gaps = 1/89 (1%)
 Strand = Plus / Minus

                                                                        
Query: 618  gcctggcgggtttcaatacccagctcatacaatgtggtttccatatcttggttccgtgaa 677
            ||||| ||||||||||||||||| |||| ||| |||| |||||| |||| |||| |||||
Sbjct: 1282 gcctgccgggtttcaatacccagttcatgcaacgtggcttccatgtctt-gttcagtgaa 1224

                                         
Query: 678  cacttttttaggataaagcattgcaagat 706
             |||||| | ||||||||||| |||||||
Sbjct: 1223 aacttttcttggataaagcatagcaagat 1195



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 461  atttcctctcaagtaggacaatggattcaca 491
            |||| ||||||||||||||| ||||||||||
Sbjct: 1457 atttgctctcaagtaggacagtggattcaca 1427
to top
>gb|AY108418.1| Zea mays PCO104228 mRNA sequence
          Length = 857

 Score = 50.1 bits (25), Expect = 0.010
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                
Query: 216 tcgcctccaaactctgtagaattcccattccagaagacgtttctattatcaga 268
           ||||||||||||||||| || ||||| |||||||| || ||||| | ||||||
Sbjct: 570 tcgcctccaaactctgtcgagttcccgttccagaaaacatttctttcatcaga 518



 Score = 40.1 bits (20), Expect = 9.8
 Identities = 41/48 (85%)
 Strand = Plus / Minus

                                                           
Query: 446 atttgatggggtgggatttcctctcaagtaggacaatggattcacata 493
           |||||||| | ||| |||||| |||| |||||| | ||||||||||||
Sbjct: 331 atttgatgagttggtatttcccctcaggtaggagagtggattcacata 284
to top
>gb|AC005061.2| Homo sapiens BAC clone CTB-87E15 from 7, complete sequence
          Length = 114828

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 502    ctgcccccagaaaaccccaaccaccc 527
              ||||||||||||||||||| ||||||
Sbjct: 107061 ctgcccccagaaaaccccatccaccc 107086
to top
>gb|AC154740.2| Mus musculus BAC clone RP23-118I16 from chromosome 9, complete sequence
          Length = 222313

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 685    ttaggataaagcattgcaagat 706
              ||||||||||||||||||||||
Sbjct: 171013 ttaggataaagcattgcaagat 170992
to top
>gb|AF467804.1| Tachypleus tridentatus factor C precursor, mRNA, complete cds
          Length = 3060

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 228  tctgtagaattcccattccaga 249
            ||||||||||||||||||||||
Sbjct: 2309 tctgtagaattcccattccaga 2288
to top
>gb|S77064.1| factor C=endotoxin-sensitive intracellular serine protease zymogen
            {clone CrFC26} [Carcinoscorpius rotundicauda=Singapore
            horseshoe crabs, blood, amoebocytes, mRNA, 4182 nt]
          Length = 4182

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 228  tctgtagaattcccattccaga 249
            ||||||||||||||||||||||
Sbjct: 3069 tctgtagaattcccattccaga 3048
to top
>gb|S77063.1| factor C=endotoxin-sensitive intracellular serine protease zymogen
            {clone CrFC21} [Carcinoscorpius rotundicauda=Singapore
            horseshoe crabs, blood, amoebocytes, mRNA, 3438 nt]
          Length = 3438

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 228  tctgtagaattcccattccaga 249
            ||||||||||||||||||||||
Sbjct: 2326 tctgtagaattcccattccaga 2305
to top
>gb|AC120132.11| Mus musculus chromosome 6, clone RP23-105D1, complete sequence
          Length = 203185

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 161    tttatttcccaacatatttaac 182
              ||||||||||||||||||||||
Sbjct: 126093 tttatttcccaacatatttaac 126072
to top
>dbj|D90271.1|TATLFC1 Tachypleus tridentatus mRNA for limulus factor C, complete cds
          Length = 3467

 Score = 44.1 bits (22), Expect = 0.63
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 228  tctgtagaattcccattccaga 249
            ||||||||||||||||||||||
Sbjct: 2353 tctgtagaattcccattccaga 2332
to top
>gb|AC102794.8| Mus musculus chromosome 3, clone RP23-235G13, complete sequence
          Length = 166028

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 507   cccagaaaaccccaaccaccc 527
             |||||||||||||||||||||
Sbjct: 59575 cccagaaaaccccaaccaccc 59555



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 507  cccagaaaaccccaaccaccc 527
            |||||||||||||||||||||
Sbjct: 6941 cccagaaaaccccaaccaccc 6921
to top
>gb|AC120150.9| Mus musculus chromosome 16, clone RP24-241C15, complete sequence
          Length = 166172

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 29     tgaacaaagtaatttctagga 49
              |||||||||||||||||||||
Sbjct: 121545 tgaacaaagtaatttctagga 121525
to top
>gb|AC165944.3| Mus musculus chromosome 3, clone RP24-134A8, complete sequence
          Length = 175118

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 507   cccagaaaaccccaaccaccc 527
             |||||||||||||||||||||
Sbjct: 36752 cccagaaaaccccaaccaccc 36732
to top
>gb|AC160757.3| Mus musculus chromosome 3, clone RP23-200C3, complete sequence
          Length = 228862

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 507   cccagaaaaccccaaccaccc 527
             |||||||||||||||||||||
Sbjct: 88812 cccagaaaaccccaaccaccc 88832



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 507   cccagaaaaccccaaccaccc 527
             |||||||||||||||||||||
Sbjct: 36179 cccagaaaaccccaaccaccc 36199
to top
>gb|AC115778.11| Mus musculus chromosome 8, clone RP23-148F13, complete sequence
          Length = 234778

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 233   agaattcccattccagaagac 253
             |||||||||||||||||||||
Sbjct: 53933 agaattcccattccagaagac 53913
to top
>gb|AC154526.2| Mus musculus BAC clone RP24-69I14 from 16, complete sequence
          Length = 219420

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 29     tgaacaaagtaatttctagga 49
              |||||||||||||||||||||
Sbjct: 192851 tgaacaaagtaatttctagga 192871
to top
>gb|AC119220.11| Mus musculus chromosome 1, clone RP24-201K16, complete sequence
          Length = 162827

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 502   ctgcccccagaaaaccccaa 521
             ||||||||||||||||||||
Sbjct: 68181 ctgcccccagaaaaccccaa 68200
to top
>gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome
          Length = 2427734

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 499    acgctgcccccagaaaaccc 518
              ||||||||||||||||||||
Sbjct: 477573 acgctgcccccagaaaaccc 477592
to top
>gb|AC104901.13| Mus musculus chromosome 1, clone RP24-404L18, complete sequence
          Length = 144659

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 628   tttcaatacccagctcatacaatg 651
             ||||||||||||| ||||||||||
Sbjct: 11942 tttcaatacccaggtcatacaatg 11919
to top
>gb|AC146014.2| Pan troglodytes BAC clone RP43-128N21 from 7, complete sequence
          Length = 178714

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 651   gtggtttccatatcttggtt 670
             ||||||||||||||||||||
Sbjct: 59531 gtggtttccatatcttggtt 59512
to top
>emb|AL627427.11| Human DNA sequence from clone RP11-350G11 on chromosome 13, complete
             sequence
          Length = 102564

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 66    aatacttatgtataagggctataa 89
             |||||||||||||||||| |||||
Sbjct: 16876 aatacttatgtataagggatataa 16853
to top
>emb|BX842654.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 9/11
          Length = 344249

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 623    gcgggtttcaatacccagct 642
              ||||||||||||||||||||
Sbjct: 177002 gcgggtttcaatacccagct 177021
to top
>emb|CR376863.10| Zebrafish DNA sequence from clone DKEY-93F15 in linkage group 5,
             complete sequence
          Length = 183007

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 78    taagggctataatttaacac 97
             ||||||||||||||||||||
Sbjct: 15627 taagggctataatttaacac 15646
to top
>gb|AC142249.6| Mus musculus chromosome 19, clone RP23-388O22, complete sequence
          Length = 201321

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 473   gtaggacaatggattcacat 492
             ||||||||||||||||||||
Sbjct: 59351 gtaggacaatggattcacat 59370
to top
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 408    ttgtactgctgcgagccctc 427
              ||||||||||||||||||||
Sbjct: 858125 ttgtactgctgcgagccctc 858144
to top
>emb|CR385171.1| Gallus gallus finished cDNA, clone ChEST539a1
          Length = 1061

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 165 tttcccaacatatttaactc 184
           ||||||||||||||||||||
Sbjct: 884 tttcccaacatatttaactc 903
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 337     tatttccagagctatgagta 356
               ||||||||||||||||||||
Sbjct: 6378380 tatttccagagctatgagta 6378361
to top
>gb|AC175466.2| Gallus gallus BAC clone CH261-8A20 from chromosome ul, complete
            sequence
          Length = 233533

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 233  agaattcccattccagaaga 252
            ||||||||||||||||||||
Sbjct: 8541 agaattcccattccagaaga 8522
to top
>dbj|AP002861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
           PAC clone:P0665D10
          Length = 134967

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 337 tatttccagagctatgagta 356
           ||||||||||||||||||||
Sbjct: 775 tatttccagagctatgagta 756
to top
>dbj|AP001633.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0515G01
          Length = 175072

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 337    tatttccagagctatgagta 356
              ||||||||||||||||||||
Sbjct: 149446 tatttccagagctatgagta 149427
to top
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 359    tggttgttgacttccatcaccacgaaga 386
              ||||||| ||||||||||||| ||||||
Sbjct: 977984 tggttgtcgacttccatcacctcgaaga 978011
to top
>gb|AC122547.11| Mus musculus chromosome 1, clone RP23-76P20, complete sequence
          Length = 232651

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 628   tttcaatacccagctcatacaatg 651
             ||||||||||||| ||||||||||
Sbjct: 12353 tttcaatacccaggtcatacaatg 12376
to top
>dbj|AP002959.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-158K18, complete
             sequence
          Length = 179604

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 651   gtggtttccatatcttggtt 670
             ||||||||||||||||||||
Sbjct: 30161 gtggtttccatatcttggtt 30142
to top
>dbj|AP001124.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-775A1, complete
             sequences
          Length = 90354

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 651   gtggtttccatatcttggtt 670
             ||||||||||||||||||||
Sbjct: 64767 gtggtttccatatcttggtt 64748
to top
>gb|AC132449.4| Mus musculus BAC clone RP23-183J18 from 8, complete sequence
          Length = 206312

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 133    gttcaacacctcagttgttc 152
              ||||||||||||||||||||
Sbjct: 162200 gttcaacacctcagttgttc 162181
to top
>gb|AC002507.1|AC002507 Human Cosmid g5129z132 from 7q31.3, complete sequence
          Length = 41763

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 649   atgtggtttccatatcttgg 668
             ||||||||||||||||||||
Sbjct: 20636 atgtggtttccatatcttgg 20655
to top
>emb|CT009684.7| Mouse DNA sequence from clone RP23-127L21 on chromosome 13, complete
             sequence
          Length = 205067

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 339   tttccagagctatgagtagc 358
             ||||||||||||||||||||
Sbjct: 45185 tttccagagctatgagtagc 45166
to top
>emb|CT025520.10| Mouse DNA sequence from clone RP23-393E22 on chromosome 16, complete
              sequence
          Length = 220149

 Score = 40.1 bits (20), Expect = 9.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 271    gatcttgttcttcactgttt 290
              ||||||||||||||||||||
Sbjct: 182888 gatcttgttcttcactgttt 182869


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,761,505
Number of Sequences: 3902068
Number of extensions: 6761505
Number of successful extensions: 111295
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111089
Number of HSP's gapped (non-prelim): 200
length of query: 717
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 694
effective length of database: 17,143,297,704
effective search space: 11897448606576
effective search space used: 11897448606576
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top