ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags12a24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK103742.1| Oryza sativa (japonica cultivar-group) cDNA clon... 172 9e-40
2dbj|AK061862.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 5e-35
3gb|AC123525.2| Oryza sativa (japonica cultivar-group) chromosome... 94 7e-16
4dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 94 7e-16
5gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 94 7e-16
6dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 90 1e-14
7gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 90 1e-14
8emb|BX000495.1|CNS08CDL Oryza sativa chromosome 12, . BAC OSJNBb... 90 1e-14
9gb|AY104784.1| Zea mays PCO129009 mRNA sequence 76 2e-10
10gb|BT019120.1| Zea mays clone Contig732.F mRNA sequence 72 2e-09
11gb|AY109148.1| Zea mays PCO129008 mRNA sequence 72 2e-09
12gb|AC122358.2| Mus musculus BAC clone RP23-406B6 from chromosome... 42 2.2
13gb|AC098838.3| Genomic sequence for Mus musculus, clone RP23-27N... 42 2.2
14gb|AC104519.2| Genomic sequence for Mus musculus, clone RP23-8L6... 42 2.2
15gb|AF327412.1| Mus musculus H19 gene, upstream enhancer sequence 42 2.2
16gb|AC093796.3| Homo sapiens BAC clone RP11-301H24 from 4, comple... 42 2.2
17emb|CT027994.2| M.spretus DNA sequence from clone XX-CH35_17P24 ... 42 2.2
18gb|AC013548.13| Mus musculus chromosome 7, clone RP23-209O22, co... 42 2.2
19dbj|AP003182.2| Mus musculus genomic DNA, chromosome 7 clone:B18... 42 2.2
20gb|AC115930.10| Mus musculus chromosome 3, clone RP24-534H10, co... 40 8.6
21gb|AC152065.4| Mus musculus BAC clone RP23-16D9 from chromosome ... 40 8.6
22gb|AC113968.12| Mus musculus chromosome 8, clone RP23-120M17, co... 40 8.6
23gb|AF445654.1| Uncultured cyanobacterium clone SM1B04 16S riboso... 40 8.6
24emb|AL049569.13|HSDJ37C10 Human DNA sequence from clone RP1-37C1... 40 8.6
25dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
26gb|AC068904.44| Mus musculus strain C57BL/6J chromosome 9 clone ... 40 8.6
27gb|AC124982.13| Mus musculus chromosome 3, clone RP24-173F6, com... 40 8.6
28dbj|AP004257.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
29gb|AC125061.3| Mus musculus BAC clone RP23-418E13 from 5, comple... 40 8.6
30gb|AC068905.37| Mus musculus strain C57BL/6J chromosome 9 clone ... 40 8.6
31gb|AC170603.2| Mus musculus BAC clone RP23-140J10 from chromosom... 40 8.6 
>dbj|AK103742.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033138L11, full
            insert sequence
          Length = 1354

 Score =  172 bits (87), Expect = 9e-40
 Identities = 267/327 (81%)
 Strand = Plus / Minus

                                                                        
Query: 308  ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 367
            ||||||| || ||| |||| |||||||| || |||||||| ||   ||||||||||||||
Sbjct: 1027 ggggagcgtcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 968

                                                                        
Query: 368  agatgataagcagcactacacccacaaaaactccttccaggagagtagattttaattggc 427
            ||||||| ||||||||||  || |||||   ||||||||| ||||| ||||||| |  ||
Sbjct: 967  agatgatcagcagcactattccaacaaagcttccttccagcagagttgattttactaagc 908

                                                                        
Query: 428  actctccatcgcatttctctaggacaggtttagttgcgttggtcttctctgcaagatacc 487
            |||| || || |||||  |  || |||||||||| |  |||||||||||||| || ||||
Sbjct: 907  actccccgtcacattttccacggccaggtttagtagtattggtcttctctgcgaggtacc 848

                                                                        
Query: 488  tggctaatggcaggtccgaaggattctccagcaaaccatacggctgagaagcgtaaagaa 547
            || ||||||| ||||  ||||| ||||| ||||||||| | ||||||||||| |||||||
Sbjct: 847  tgcctaatggtaggtttgaagggttctctagcaaaccaaagggctgagaagcataaagaa 788

                                                                        
Query: 548  ctgtgtatttagccccagacttgtcaagaacagaaaccagatccaaaagcaactgccctt 607
              || |||||||| |||||||| |  || | || |||||| ||  ||||||||| |||||
Sbjct: 787  tcgtatatttagctccagacttcttcagcagagtaaccagctcagaaagcaactcccctt 728

                                       
Query: 608  ctgattttgcattatccttgaaaccac 634
            |||||||||  ||||||||||||||||
Sbjct: 727  ctgattttgtgttatccttgaaaccac 701
to top
>dbj|AK061862.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-G12, full
            insert sequence
          Length = 1371

 Score =  157 bits (79), Expect = 5e-35
 Identities = 265/327 (81%)
 Strand = Plus / Minus

                                                                        
Query: 308  ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 367
            ||||||| || ||| |||| |||||||| || |||||||| ||   ||||||||||||||
Sbjct: 1042 ggggagcatcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 983

                                                                        
Query: 368  agatgataagcagcactacacccacaaaaactccttccaggagagtagattttaattggc 427
            ||||||| ||||||||||  || |||||   |||||| || ||||| ||||||| |  ||
Sbjct: 982  agatgattagcagcactattccaacaaagcttccttctagcagagttgattttactaagc 923

                                                                        
Query: 428  actctccatcgcatttctctaggacaggtttagttgcgttggtcttctctgcaagatacc 487
            |||| ||||| |||||  |  || | |||||||| |  || ||||||||||| || ||||
Sbjct: 922  actccccatcacattttccacggccgggtttagtagtattagtcttctctgcgaggtacc 863

                                                                        
Query: 488  tggctaatggcaggtccgaaggattctccagcaaaccatacggctgagaagcgtaaagaa 547
            || |||| |||||||  |||||  |||| ||||||||||| ||||||||||| |||||||
Sbjct: 862  tgcctaacggcaggtttgaagggctctctagcaaaccatagggctgagaagcataaagaa 803

                                                                        
Query: 548  ctgtgtatttagccccagacttgtcaagaacagaaaccagatccaaaagcaactgccctt 607
             ||| |||||||| |||||||| |  || | || |||||| ||  |||| |||| |||||
Sbjct: 802  ttgtatatttagctccagacttcttcagcagagtaaccagctcagaaagtaactcccctt 743

                                       
Query: 608  ctgattttgcattatccttgaaaccac 634
            |||||||||  ||||||||||||||||
Sbjct: 742  ctgattttgtgttatccttgaaaccac 716
to top
>gb|AC123525.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0056E15,
              complete sequence
          Length = 147941

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 140/171 (81%)
 Strand = Plus / Minus

                                                                          
Query: 399    tccttccaggagagtagattttaattggcactctccatcgcatttctctaggacaggttt 458
              ||||||||| ||||| ||||||| |  |||||| || || |||||  |  || |||||||
Sbjct: 114190 tccttccagcagagttgattttactaagcactccccgtcacattttccacggccaggttt 114131

                                                                          
Query: 459    agttgcgttggtcttctctgcaagatacctggctaatggcaggtccgaaggattctccag 518
              ||| |  |||||||||||||| || |||||| ||||||| ||||  ||||| ||||| ||
Sbjct: 114130 agtagtattggtcttctctgcgaggtacctgcctaatggtaggtttgaagggttctctag 114071

                                                                 
Query: 519    caaaccatacggctgagaagcgtaaagaactgtgtatttagccccagactt 569
              ||||||| | ||||||||||| |||||||  || |||||||| ||||||||
Sbjct: 114070 caaaccaaagggctgagaagcataaagaatcgtatatttagctccagactt 114020



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 67/78 (85%)
 Strand = Plus / Minus

                                                                          
Query: 308    ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 367
              ||||||| || ||| |||| |||||||| || |||||||| ||   ||||||||||||||
Sbjct: 114514 ggggagcgtcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 114455

                                
Query: 368    agatgataagcagcacta 385
              ||||||| ||||||||||
Sbjct: 114454 agatgatcagcagcacta 114437



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                             
Query: 604    ccttctgattttgcattatccttgaaaccac 634
              |||||||||||||  ||||||||||||||||
Sbjct: 113906 ccttctgattttgtgttatccttgaaaccac 113876
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 140/171 (81%)
 Strand = Plus / Plus

                                                                           
Query: 399     tccttccaggagagtagattttaattggcactctccatcgcatttctctaggacaggttt 458
               ||||||||| ||||| ||||||| |  |||||| || || |||||  |  || |||||||
Sbjct: 1276425 tccttccagcagagttgattttactaagcactccccgtcacattttccacggccaggttt 1276484

                                                                           
Query: 459     agttgcgttggtcttctctgcaagatacctggctaatggcaggtccgaaggattctccag 518
               ||| |  |||||||||||||| || |||||| ||||||| ||||  ||||| ||||| ||
Sbjct: 1276485 agtagtattggtcttctctgcgaggtacctgcctaatggtaggtttgaagggttctctag 1276544

                                                                  
Query: 519     caaaccatacggctgagaagcgtaaagaactgtgtatttagccccagactt 569
               ||||||| | ||||||||||| |||||||  || |||||||| ||||||||
Sbjct: 1276545 caaaccaaagggctgagaagcataaagaatcgtatatttagctccagactt 1276595



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 67/78 (85%)
 Strand = Plus / Plus

                                                                           
Query: 308     ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 367
               ||||||| || ||| |||| |||||||| || |||||||| ||   ||||||||||||||
Sbjct: 1276101 ggggagcgtcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 1276160

                                 
Query: 368     agatgataagcagcacta 385
               ||||||| ||||||||||
Sbjct: 1276161 agatgatcagcagcacta 1276178



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                              
Query: 604     ccttctgattttgcattatccttgaaaccac 634
               |||||||||||||  ||||||||||||||||
Sbjct: 1276709 ccttctgattttgtgttatccttgaaaccac 1276739
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 140/171 (81%)
 Strand = Plus / Plus

                                                                           
Query: 399     tccttccaggagagtagattttaattggcactctccatcgcatttctctaggacaggttt 458
               ||||||||| ||||| ||||||| |  |||||| || || |||||  |  || |||||||
Sbjct: 1274146 tccttccagcagagttgattttactaagcactccccgtcacattttccacggccaggttt 1274205

                                                                           
Query: 459     agttgcgttggtcttctctgcaagatacctggctaatggcaggtccgaaggattctccag 518
               ||| |  |||||||||||||| || |||||| ||||||| ||||  ||||| ||||| ||
Sbjct: 1274206 agtagtattggtcttctctgcgaggtacctgcctaatggtaggtttgaagggttctctag 1274265

                                                                  
Query: 519     caaaccatacggctgagaagcgtaaagaactgtgtatttagccccagactt 569
               ||||||| | ||||||||||| |||||||  || |||||||| ||||||||
Sbjct: 1274266 caaaccaaagggctgagaagcataaagaatcgtatatttagctccagactt 1274316



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 67/78 (85%)
 Strand = Plus / Plus

                                                                           
Query: 308     ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 367
               ||||||| || ||| |||| |||||||| || |||||||| ||   ||||||||||||||
Sbjct: 1273822 ggggagcgtcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 1273881

                                 
Query: 368     agatgataagcagcacta 385
               ||||||| ||||||||||
Sbjct: 1273882 agatgatcagcagcacta 1273899



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                              
Query: 604     ccttctgattttgcattatccttgaaaccac 634
               |||||||||||||  ||||||||||||||||
Sbjct: 1274430 ccttctgattttgtgttatccttgaaaccac 1274460
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 87/101 (86%)
 Strand = Plus / Plus

                                                                           
Query: 469     gtcttctctgcaagatacctggctaatggcaggtccgaaggattctccagcaaaccatac 528
               ||||||||||| || |||||| |||| |||||||  |||||  |||| ||||||||||| 
Sbjct: 1151325 gtcttctctgcgaggtacctgcctaacggcaggtttgaagggctctctagcaaaccatag 1151384

                                                        
Query: 529     ggctgagaagcgtaaagaactgtgtatttagccccagactt 569
               ||||||||||| ||||||| ||| |||||||| ||||||||
Sbjct: 1151385 ggctgagaagcataaagaattgtatatttagctccagactt 1151425



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 67/78 (85%)
 Strand = Plus / Plus

                                                                           
Query: 308     ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 367
               ||||||| || ||| |||| |||||||| || |||||||| ||   ||||||||||||||
Sbjct: 1150960 ggggagcatcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 1151019

                                 
Query: 368     agatgataagcagcacta 385
               ||||||| ||||||||||
Sbjct: 1151020 agatgattagcagcacta 1151037



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                              
Query: 604     ccttctgattttgcattatccttgaaaccac 634
               |||||||||||||  ||||||||||||||||
Sbjct: 1151540 ccttctgattttgtgttatccttgaaaccac 1151570
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 87/101 (86%)
 Strand = Plus / Plus

                                                                           
Query: 469     gtcttctctgcaagatacctggctaatggcaggtccgaaggattctccagcaaaccatac 528
               ||||||||||| || |||||| |||| |||||||  |||||  |||| ||||||||||| 
Sbjct: 1151325 gtcttctctgcgaggtacctgcctaacggcaggtttgaagggctctctagcaaaccatag 1151384

                                                        
Query: 529     ggctgagaagcgtaaagaactgtgtatttagccccagactt 569
               ||||||||||| ||||||| ||| |||||||| ||||||||
Sbjct: 1151385 ggctgagaagcataaagaattgtatatttagctccagactt 1151425



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 67/78 (85%)
 Strand = Plus / Plus

                                                                           
Query: 308     ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 367
               ||||||| || ||| |||| |||||||| || |||||||| ||   ||||||||||||||
Sbjct: 1150960 ggggagcatcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 1151019

                                 
Query: 368     agatgataagcagcacta 385
               ||||||| ||||||||||
Sbjct: 1151020 agatgattagcagcacta 1151037



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                              
Query: 604     ccttctgattttgcattatccttgaaaccac 634
               |||||||||||||  ||||||||||||||||
Sbjct: 1151540 ccttctgattttgtgttatccttgaaaccac 1151570
to top
>emb|BX000495.1|CNS08CDL Oryza sativa chromosome 12, . BAC OSJNBb0119L20 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 126974

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 87/101 (86%)
 Strand = Plus / Plus

                                                                         
Query: 469   gtcttctctgcaagatacctggctaatggcaggtccgaaggattctccagcaaaccatac 528
             ||||||||||| || |||||| |||| |||||||  |||||  |||| ||||||||||| 
Sbjct: 90308 gtcttctctgcgaggtacctgcctaacggcaggtttgaagggctctctagcaaaccatag 90367

                                                      
Query: 529   ggctgagaagcgtaaagaactgtgtatttagccccagactt 569
             ||||||||||| ||||||| ||| |||||||| ||||||||
Sbjct: 90368 ggctgagaagcataaagaattgtatatttagctccagactt 90408



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 67/78 (85%)
 Strand = Plus / Plus

                                                                         
Query: 308   ggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgatatca 367
             ||||||| || ||| |||| |||||||| || |||||||| ||   ||||||||||||||
Sbjct: 89943 ggggagcatcgaactttgatggggtatcaattcccatcatacatttgagtcctgatatca 90002

                               
Query: 368   agatgataagcagcacta 385
             ||||||| ||||||||||
Sbjct: 90003 agatgattagcagcacta 90020



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 604   ccttctgattttgcattatccttgaaaccac 634
             |||||||||||||  ||||||||||||||||
Sbjct: 90523 ccttctgattttgtgttatccttgaaaccac 90553
to top
>gb|AY104784.1| Zea mays PCO129009 mRNA sequence
          Length = 1520

 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 71/82 (86%)
 Strand = Plus / Minus

                                                                        
Query: 304  tcctggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgat 363
            ||||||||||| |||||||| || || |||||||| |||||||||||   ||||||||||
Sbjct: 1083 tcctggggagcttcaaacctcgagggagtatcgatgcccatcatgcacatgagtcctgat 1024

                                  
Query: 364  atcaagatgataagcagcacta 385
            |||| |||||| || |||||||
Sbjct: 1023 atcaggatgatgagaagcacta 1002
to top
>gb|BT019120.1| Zea mays clone Contig732.F mRNA sequence
          Length = 436

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 114/140 (81%)
 Strand = Plus / Minus

                                                                       
Query: 304 tcctggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgat 363
           ||||||||||| |||||| | || || |||||||| |||||||| ||   ||| ||||||
Sbjct: 148 tcctggggagcttcaaacttggagggagtatcgattcccatcatacacatgagccctgat 89

                                                                       
Query: 364 atcaagatgataagcagcactacacccacaaaaactccttccaggagagtagattttaat 423
           |||||||||||||| |||||||  || |||||   |||||| || ||||| ||||| | |
Sbjct: 88  atcaagatgataaggagcactattccgacaaaggttccttcaagaagagttgatttgact 29

                               
Query: 424 tggcactctccatcgcattt 443
            |||||||||| || |||||
Sbjct: 28  aggcactctccgtcacattt 9
to top
>gb|AY109148.1| Zea mays PCO129008 mRNA sequence
          Length = 1389

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 114/140 (81%)
 Strand = Plus / Minus

                                                                        
Query: 304  tcctggggagcctcaaaccttgacggggtatcgatccccatcatgcagcagagtcctgat 363
            ||||||||||| |||||| | || || |||||||| |||||||| ||   ||| ||||||
Sbjct: 1084 tcctggggagcttcaaacttggagggagtatcgattcccatcatacacatgagccctgat 1025

                                                                        
Query: 364  atcaagatgataagcagcactacacccacaaaaactccttccaggagagtagattttaat 423
            |||||||||||||| |||||||  || |||||   |||||| || ||||| ||||| | |
Sbjct: 1024 atcaagatgataaggagcactattccgacaaaggttccttcaagaagagttgatttgact 965

                                
Query: 424  tggcactctccatcgcattt 443
             |||||||||| || |||||
Sbjct: 964  aggcactctccgtcacattt 945
to top
>gb|AC122358.2| Mus musculus BAC clone RP23-406B6 from chromosome 17, complete sequence
          Length = 184952

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 375   aagcagcactacacccacaaa 395
             |||||||||||||||||||||
Sbjct: 78885 aagcagcactacacccacaaa 78905
to top
>gb|AC098838.3| Genomic sequence for Mus musculus, clone RP23-27N1, from chromosome 17,
              complete sequence
          Length = 254336

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 375    aagcagcactacacccacaaa 395
              |||||||||||||||||||||
Sbjct: 248536 aagcagcactacacccacaaa 248516
to top
>gb|AC104519.2| Genomic sequence for Mus musculus, clone RP23-8L6, complete sequence
          Length = 197070

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 375   aagcagcactacacccacaaa 395
             |||||||||||||||||||||
Sbjct: 16848 aagcagcactacacccacaaa 16828
to top
>gb|AF327412.1| Mus musculus H19 gene, upstream enhancer sequence
          Length = 7708

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 207  ggcacctttcaagaggaagct 227
            |||||||||||||||||||||
Sbjct: 4759 ggcacctttcaagaggaagct 4779
to top
>gb|AC093796.3| Homo sapiens BAC clone RP11-301H24 from 4, complete sequence
          Length = 165929

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 465   gttggtcttctctgcaagata 485
             |||||||||||||||||||||
Sbjct: 99564 gttggtcttctctgcaagata 99584
to top
>emb|CT027994.2| M.spretus DNA sequence from clone XX-CH35_17P24 on chromosome 7, complete
              sequence
          Length = 169471

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 207    ggcacctttcaagaggaagct 227
              |||||||||||||||||||||
Sbjct: 127172 ggcacctttcaagaggaagct 127192
to top
>gb|AC013548.13| Mus musculus chromosome 7, clone RP23-209O22, complete sequence
          Length = 220084

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 207    ggcacctttcaagaggaagct 227
              |||||||||||||||||||||
Sbjct: 130358 ggcacctttcaagaggaagct 130378
to top
>dbj|AP003182.2| Mus musculus genomic DNA, chromosome 7 clone:B189M11, complete sequences
          Length = 105288

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 207    ggcacctttcaagaggaagct 227
              |||||||||||||||||||||
Sbjct: 100473 ggcacctttcaagaggaagct 100493
to top
>gb|AC115930.10| Mus musculus chromosome 3, clone RP24-534H10, complete sequence
          Length = 158041

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 574    agaacagaaaccagatccaa 593
              ||||||||||||||||||||
Sbjct: 145781 agaacagaaaccagatccaa 145762
to top
>gb|AC152065.4| Mus musculus BAC clone RP23-16D9 from chromosome 12, complete sequence
          Length = 226392

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 192    aaaatacacaagcaaggcac 211
              ||||||||||||||||||||
Sbjct: 137595 aaaatacacaagcaaggcac 137614
to top
>gb|AC113968.12| Mus musculus chromosome 8, clone RP23-120M17, complete sequence
          Length = 220191

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 216   caagaggaagctatctatat 235
             ||||||||||||||||||||
Sbjct: 94685 caagaggaagctatctatat 94666
to top
>gb|AF445654.1| Uncultured cyanobacterium clone SM1B04 16S ribosomal RNA gene,
           partial sequence
          Length = 1445

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 555 tttagccccagacttgtcaa 574
           ||||||||||||||||||||
Sbjct: 544 tttagccccagacttgtcaa 525
to top
>emb|AL049569.13|HSDJ37C10 Human DNA sequence from clone RP1-37C10 on chromosome 1p35.2-35.21
              Contains the 3' end of the CROCC gene for ciliary rootlet
              coiled-coil rootletin (KIAA0445), the MFAP2 gene for
              microfibrillar-associated protein 2, a novel gene, the gene
              for a novel protein, the SDHB gene for succinate
              dehydrogenase complex subunit B iron sulfur (Ip), the PADI2
              gene for type II peptidyl arginine deiminase, complete
              sequence
          Length = 216497

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 337    atccccatcatgcagcagag 356
              ||||||||||||||||||||
Sbjct: 154639 atccccatcatgcagcagag 154620
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 176      agaagtttggcttagaaaaa 195
                ||||||||||||||||||||
Sbjct: 33106724 agaagtttggcttagaaaaa 33106743
to top
>gb|AC068904.44| Mus musculus strain C57BL/6J chromosome 9 clone rp23-221i11, complete
             sequence
          Length = 186063

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 219   gaggaagctatctatatcca 238
             ||||||||||||||||||||
Sbjct: 11543 gaggaagctatctatatcca 11562
to top
>gb|AC124982.13| Mus musculus chromosome 3, clone RP24-173F6, complete sequence
          Length = 180185

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 574    agaacagaaaccagatccaa 593
              ||||||||||||||||||||
Sbjct: 144132 agaacagaaaccagatccaa 144151
to top
>dbj|AP004257.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1369_G08
          Length = 104190

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   agaagtttggcttagaaaaa 195
             ||||||||||||||||||||
Sbjct: 22384 agaagtttggcttagaaaaa 22403
to top
>gb|AC125061.3| Mus musculus BAC clone RP23-418E13 from 5, complete sequence
          Length = 210342

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 575    gaacagaaaccagatccaaa 594
              ||||||||||||||||||||
Sbjct: 116920 gaacagaaaccagatccaaa 116939
to top
>gb|AC068905.37| Mus musculus strain C57BL/6J chromosome 9 clone rp23-222i2, complete
             sequence
          Length = 185413

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   gaggaagctatctatatcca 238
             ||||||||||||||||||||
Sbjct: 22631 gaggaagctatctatatcca 22612
to top
>gb|AC170603.2| Mus musculus BAC clone RP23-140J10 from chromosome 8, complete sequence
          Length = 221596

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 216   caagaggaagctatctatat 235
             ||||||||||||||||||||
Sbjct: 35728 caagaggaagctatctatat 35709


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,447,699
Number of Sequences: 3902068
Number of extensions: 5447699
Number of successful extensions: 95699
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95423
Number of HSP's gapped (non-prelim): 272
length of query: 634
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 611
effective length of database: 17,143,297,704
effective search space: 10474554897144
effective search space used: 10474554897144
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top