Clone Information

BLAST Search Result

Clone Name	rbags11l21
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	121	3e-24
2	dbj\|AP007227.2\| Oryza sativa (japonica cultivar-group) genomic D...	121	3e-24
3	gb\|AY110316.1\| Zea mays CL24857_1 mRNA sequence	105	2e-19
4	dbj\|AP004853.3\| Oryza sativa (japonica cultivar-group) genomic D...	94	7e-16
5	dbj\|AK102006.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	94	7e-16
6	dbj\|AK063989.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	94	7e-16
7	gb\|AC116723.13\| Mus musculus chromosome 3, clone RP23-266J14, co...	44	0.59
8	dbj\|AP005845.2\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.59
9	gb\|AC134786.6\| Mus musculus chromosome 15, clone RP24-502A14, co...	42	2.3
10	gb\|AC162303.4\| Mus musculus chromosome 15, clone RP23-475N20, co...	42	2.3
11	ref\|NM_101441.2\| Arabidopsis thaliana unknown protein AT1G15730 ...	40	9.2
12	ref\|NM_118194.2\| Arabidopsis thaliana oxidoreductase AT4G20760 m...	40	9.2
13	ref\|NM_184112.2\| Oryza sativa (japonica cultivar-group), mRNA	40	9.2
14	gb\|AC151710.1\| Pan troglodytes chromosome X clone PTB-084K12 map...	40	9.2
15	emb\|BX950201.12\| Zebrafish DNA sequence from clone CH211-101L11 ...	40	9.2
16	emb\|AL645817.1\| Human DNA sequence from clone RP1-2A2 on chromos...	40	9.2
17	gb\|BT000860.1\| Arabidopsis thaliana At4g20760/F21C20_110 mRNA, c...	40	9.2
18	emb\|AL357774.11\| Human DNA sequence from clone RP11-473N15 on ch...	40	9.2
19	gb\|BT000764.1\| Arabidopsis thaliana clone RAFL09-39-L05 (R18723)...	40	9.2
20	ref\|XM_783215.1\| PREDICTED: Strongylocentrotus purpuratus simila...	40	9.2
21	emb\|AL161553.2\|ATCHRIV53 Arabidopsis thaliana DNA chromosome 4, ...	40	9.2
22	emb\|AL080254.1\|ATF21C20 Arabidopsis thaliana DNA chromosome 4, B...	40	9.2
23	emb\|CR762397.7\| Zebrafish DNA sequence from clone DKEY-258A22 in...	40	9.2
24	emb\|BX539334.6\| Zebrafish DNA sequence from clone DKEYP-4H2 in l...	40	9.2
25	emb\|AL807239.5\| Zebrafish DNA sequence from clone CH211-231H1 in...	40	9.2
26	gb\|AY093965.1\| Arabidopsis thaliana At1g15730/F7H2_7 mRNA, compl...	40	9.2
27	gb\|AC091899.2\| Homo sapiens chromosome 5 clone RP11-158D20, comp...	40	9.2
28	ref\|XM_927926.1\| PREDICTED: Homo sapiens hypothetical protein LO...	40	9.2
29	gb\|AY052312.1\| Arabidopsis thaliana AT4g20760/F21C20_110 mRNA, c...	40	9.2
30	gb\|AC026796.5\| Homo sapiens chromosome 5 clone CTD-2292M14, comp...	40	9.2
31	gb\|AF367261.1\|AF367261 Arabidopsis thaliana At1g15730/F7H2_7 mRN...	40	9.2
32	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.2
33	emb\|BX814741.1\|CNS0AARA Arabidopsis thaliana Full-length cDNA Co...	40	9.2
34	emb\|BX813505.1\|CNS0AAQX Arabidopsis thaliana Full-length cDNA Co...	40	9.2
35	emb\|BX842319.1\|CNS0A2QW Arabidopsis thaliana Full-length cDNA Co...	40	9.2
36	gb\|AC096591.1\| Homo sapiens BAC clone RP11-768F19 from 2, comple...	40	9.2
37	gb\|AC092138.4\| Homo sapiens chromosome 16 clone RP11-351A20, com...	40	9.2
38	gb\|AC009062.8\| Homo sapiens chromosome 16 clone RP11-298C15, com...	40	9.2
39	gb\|AF315736.1\|AF315736 Arabidopsis thaliana PRLI-interacting fac...	40	9.2
40	gb\|AE004954.1\| Pseudomonas aeruginosa PAO1, section 515 of 529 o...	40	9.2
41	gb\|AE004671.1\| Pseudomonas aeruginosa PAO1, section 232 of 529 o...	40	9.2
42	emb\|BX001036.12\| Zebrafish DNA sequence from clone CH211-155G22 ...	40	9.2
43	gb\|AC034256.3\|F7H2 Sequence of BAC F7H2 from Arabidopsis thalian...	40	9.2
44	emb\|BX248514.3\| Zebrafish DNA sequence from clone CH211-237A6 in...	40	9.2
45	dbj\|AP002747.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.2
46	dbj\|AP002541.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	9.2
47	dbj\|AK104596.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	9.2
48	dbj\|AK104611.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	9.2
49	emb\|Z84815.1\|HS2A2A Human DNA sequence from PAC 2A2 on chromosome X	40	9.2
50	dbj\|AK061406.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	9.2
51	dbj\|AK061369.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	9.2
52	gb\|L36959.1\|BLYCA Hordeum vulgare carbonic anhydrase mRNA, compl...	40	9.2

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  121 bits (61), Expect = 3e-24
 Identities = 98/109 (89%), Gaps = 1/109 (0%)
 Strand = Plus / Minus

                                                                            
Query: 438      cctgaaagacgaagcgttggggcattccactgacagaaagcagccctttcatccggtatt 497
                |||||||||| ||||| || |||||||||||||||||||| ||||| ||||||||||| |
Sbjct: 34093431 cctgaaagacaaagcgctgaggcattccactgacagaaagtagccccttcatccggta-t 34093373

                                                                 
Query: 498      atatcatcactgcgtgccagcagtaggttccccaaccacatgtcagcct 546
                || ||||| |||||| | ||||||||||| |||||||||||||||||||
Sbjct: 34093372 atgtcatcgctgcgttctagcagtaggtttcccaaccacatgtcagcct 34093324



 Score =  109 bits (55), Expect = 1e-20
 Identities = 121/143 (84%)
 Strand = Plus / Minus

                                                                            
Query: 299      ttcttcagcaggcagtccttgaagcccgtctccagctcttctcggttcaggttcctgccg 358
                |||||||| ||||| |||||||||||| ||||||| ||||| |  || || ||| |||| 
Sbjct: 34093707 ttcttcagtaggcaatccttgaagcccttctccagttcttccccattgagattcttgcct 34093648

                                                                            
Query: 359      atgaacacaatcttgttgatgcgcggttcgttgggctcccacatcctgtcaggtgatccc 418
                ||||| ||||||||||||||||| || || || || |||||||| || || || ||||||
Sbjct: 34093647 atgaatacaatcttgttgatgcgtggctcatttggttcccacattctctcgggagatccc 34093588

                                       
Query: 419      tggaaaatgtcatgcactccctg 441
                ||||||||||| |||||||||||
Sbjct: 34093587 tggaaaatgtcgtgcactccctg 34093565



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 59/63 (93%)
 Strand = Plus / Minus

                                                                            
Query: 544      ccttttcaaggtccatctccccttcgcaaacgatgcttacagaagaaacgccaggatcat 603
                |||||||||| |||||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct: 34093175 ccttttcaagatccatctccccttcacaaacaatgcttacagaagaaacaccaggatcat 34093116

                   
Query: 604      ggg 606
                |||
Sbjct: 34093115 ggg 34093113



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 59/63 (93%)
 Strand = Plus / Minus

                                                                            
Query: 544      ccttttcaaggtccatctccccttcgcaaacgatgcttacagaagaaacgccaggatcat 603
                |||||||||| ||||||||||||| |||||| ||||||||||||||||| ||||||||||
Sbjct: 32720900 ccttttcaagatccatctcccctttgcaaacaatgcttacagaagaaacaccaggatcat 32720841

                   
Query: 604      ggg 606
                |||
Sbjct: 32720840 ggg 32720838



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                        
Query: 194      gttctgcagccacaaagctcaaaatcatgaagctggagat 233
                ||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 34093794 gttctacagccgcaaagctcaaaatcatgaagctggagat 34093755



 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 110      tgttccccaaatctatatacacatat 135
                ||||| ||||||||||||||||||||
Sbjct: 18896543 tgttctccaaatctatatacacatat 18896568



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 516      agcagtaggttccccaaccacatgtcagc 544
                ||||||||||| |||||||||||| ||||
Sbjct: 32721081 agcagtaggtttcccaaccacatgccagc 32721053

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>dbj|AP007227.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0032L17
          Length = 165808

 Score =  121 bits (61), Expect = 3e-24
 Identities = 98/109 (89%), Gaps = 1/109 (0%)
 Strand = Plus / Minus

                                                                         
Query: 438   cctgaaagacgaagcgttggggcattccactgacagaaagcagccctttcatccggtatt 497
             |||||||||| ||||| || |||||||||||||||||||| ||||| ||||||||||| |
Sbjct: 20945 cctgaaagacaaagcgctgaggcattccactgacagaaagtagccccttcatccggta-t 20887

                                                              
Query: 498   atatcatcactgcgtgccagcagtaggttccccaaccacatgtcagcct 546
             || ||||| |||||| | ||||||||||| |||||||||||||||||||
Sbjct: 20886 atgtcatcgctgcgttctagcagtaggtttcccaaccacatgtcagcct 20838



 Score =  109 bits (55), Expect = 1e-20
 Identities = 121/143 (84%)
 Strand = Plus / Minus

                                                                         
Query: 299   ttcttcagcaggcagtccttgaagcccgtctccagctcttctcggttcaggttcctgccg 358
             |||||||| ||||| |||||||||||| ||||||| ||||| |  || || ||| |||| 
Sbjct: 21221 ttcttcagtaggcaatccttgaagcccttctccagttcttccccattgagattcttgcct 21162

                                                                         
Query: 359   atgaacacaatcttgttgatgcgcggttcgttgggctcccacatcctgtcaggtgatccc 418
             ||||| ||||||||||||||||| || || || || |||||||| || || || ||||||
Sbjct: 21161 atgaatacaatcttgttgatgcgtggctcatttggttcccacattctctcgggagatccc 21102

                                    
Query: 419   tggaaaatgtcatgcactccctg 441
             ||||||||||| |||||||||||
Sbjct: 21101 tggaaaatgtcgtgcactccctg 21079



 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 59/63 (93%)
 Strand = Plus / Minus

                                                                         
Query: 544   ccttttcaaggtccatctccccttcgcaaacgatgcttacagaagaaacgccaggatcat 603
             |||||||||| |||||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct: 20689 ccttttcaagatccatctccccttcacaaacaatgcttacagaagaaacaccaggatcat 20630

                
Query: 604   ggg 606
             |||
Sbjct: 20629 ggg 20627



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                     
Query: 194   gttctgcagccacaaagctcaaaatcatgaagctggagat 233
             ||||| ||||| ||||||||||||||||||||||||||||
Sbjct: 21308 gttctacagccgcaaagctcaaaatcatgaagctggagat 21269

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>gb|AY110316.1| Zea mays CL24857_1 mRNA sequence
          Length = 582

 Score =  105 bits (53), Expect = 2e-19
 Identities = 80/89 (89%)
 Strand = Plus / Plus

                                                                       
Query: 392 ggctcccacatcctgtcaggtgatccctggaaaatgtcatgcactccctgaaagacgaag 451
           ||||||||||| || ||||| |||||||||||||||||||| |||||||||||||| || 
Sbjct: 490 ggctcccacattctctcaggagatccctggaaaatgtcatggactccctgaaagacaaat 549

                                        
Query: 452 cgttggggcattccactgacagaaagcag 480
           || || | |||||||||||||||||||||
Sbjct: 550 cgctgcgacattccactgacagaaagcag 578



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 54/63 (85%)
 Strand = Plus / Plus

                                                                       
Query: 299 ttcttcagcaggcagtccttgaagcccgtctccagctcttctcggttcaggttcctgccg 358
           |||||||| ||||| |||||||| ||| | ||||||||||||   || ||||||||||||
Sbjct: 397 ttcttcagtaggcaatccttgaaccccttatccagctcttctttattgaggttcctgccg 456

              
Query: 359 atg 361
           |||
Sbjct: 457 atg 459



 Score = 48.1 bits (24), Expect = 0.038
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 194 gttctgcagccacaaagctcaaaatcatgaag 225
           ||||||| |||||||| |||||||||||||||
Sbjct: 181 gttctgcggccacaaaactcaaaatcatgaag 212

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>dbj|AP004853.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1448_G06
          Length = 136823

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 59/63 (93%)
 Strand = Plus / Minus

                                                                         
Query: 544   ccttttcaaggtccatctccccttcgcaaacgatgcttacagaagaaacgccaggatcat 603
             |||||||||| ||||||||||||| |||||| ||||||||||||||||| ||||||||||
Sbjct: 49135 ccttttcaagatccatctcccctttgcaaacaatgcttacagaagaaacaccaggatcat 49076

                
Query: 604   ggg 606
             |||
Sbjct: 49075 ggg 49073



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 516   agcagtaggttccccaaccacatgtcagc 544
             ||||||||||| |||||||||||| ||||
Sbjct: 49316 agcagtaggtttcccaaccacatgccagc 49288

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>dbj|AK102006.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033079N19, full
           insert sequence
          Length = 2291

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 59/63 (93%)
 Strand = Plus / Minus

                                                                       
Query: 544 ccttttcaaggtccatctccccttcgcaaacgatgcttacagaagaaacgccaggatcat 603
           |||||||||| ||||||||||||| |||||| ||||||||||||||||| ||||||||||
Sbjct: 458 ccttttcaagatccatctcccctttgcaaacaatgcttacagaagaaacaccaggatcat 399

              
Query: 604 ggg 606
           |||
Sbjct: 398 ggg 396

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>dbj|AK063989.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-E02, full
           insert sequence
          Length = 1376

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 59/63 (93%)
 Strand = Plus / Minus

                                                                       
Query: 544 ccttttcaaggtccatctccccttcgcaaacgatgcttacagaagaaacgccaggatcat 603
           |||||||||| ||||||||||||| |||||| ||||||||||||||||| ||||||||||
Sbjct: 484 ccttttcaagatccatctcccctttgcaaacaatgcttacagaagaaacaccaggatcat 425

              
Query: 604 ggg 606
           |||
Sbjct: 424 ggg 422

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>gb|AC116723.13| Mus musculus chromosome 3, clone RP23-266J14, complete sequence
          Length = 184835

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 106    ctgatgttccccaaatctatat 127
              ||||||||||||||||||||||
Sbjct: 107868 ctgatgttccccaaatctatat 107847

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>dbj|AP005845.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0461D06
          Length = 112895

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 110   tgttccccaaatctatatacacatat 135
             ||||| ||||||||||||||||||||
Sbjct: 60076 tgttctccaaatctatatacacatat 60101

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>gb|AC134786.6| Mus musculus chromosome 15, clone RP24-502A14, complete sequence
          Length = 179157

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 469  gacagaaagcagccctttcat 489
            |||||||||||||||||||||
Sbjct: 8516 gacagaaagcagccctttcat 8536

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>gb|AC162303.4| Mus musculus chromosome 15, clone RP23-475N20, complete sequence
          Length = 181487

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 469    gacagaaagcagccctttcat 489
              |||||||||||||||||||||
Sbjct: 104861 gacagaaagcagccctttcat 104881

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>ref|NM_101441.2| Arabidopsis thaliana unknown protein AT1G15730 mRNA, complete cds
          Length = 1901

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 341  cggttcaggttcctgccgatgaacacaatcttgttg 376
            |||||||  ||| |||||||||| ||||||||||||
Sbjct: 1354 cggttcaaattcttgccgatgaaaacaatcttgttg 1319

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>ref|NM_118194.2| Arabidopsis thaliana oxidoreductase AT4G20760 mRNA, complete cds
          Length = 1154

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 49  acatccaggcacagtagaca 68
           ||||||||||||||||||||
Sbjct: 751 acatccaggcacagtagaca 770

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>ref|NM_184112.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1353

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 357 cgatgaacacaatcttgttgatgc 380
           ||||||||||||||||| ||||||
Sbjct: 246 cgatgaacacaatcttgctgatgc 223

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>gb|AC151710.1| Pan troglodytes chromosome X clone PTB-084K12 map human ortholog q23,
             complete sequence
          Length = 174741

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 546   ttttcaaggtccatctcccc 565
             ||||||||||||||||||||
Sbjct: 38450 ttttcaaggtccatctcccc 38431

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>emb|BX950201.12| Zebrafish DNA sequence from clone CH211-101L11 in linkage group 1,
              complete sequence
          Length = 167099

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 148    cggttcgttcacggttttgg 167
              ||||||||||||||||||||
Sbjct: 134776 cggttcgttcacggttttgg 134795

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>emb|AL645817.1| Human DNA sequence from clone RP1-2A2 on chromosome Xq21, complete
              sequence
          Length = 129249

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 207    aaagctcaaaatcatgaagc 226
              ||||||||||||||||||||
Sbjct: 121998 aaagctcaaaatcatgaagc 122017

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>gb|BT000860.1| Arabidopsis thaliana At4g20760/F21C20_110 mRNA, complete cds
          Length = 897

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 49  acatccaggcacagtagaca 68
           ||||||||||||||||||||
Sbjct: 723 acatccaggcacagtagaca 742

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>emb|AL357774.11| Human DNA sequence from clone RP11-473N15 on chromosome X Contains the 5'
              end of the PAK3 gene for p21 (CDKN1A)-activated kinase 3,
              complete sequence
          Length = 156498

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 546    ttttcaaggtccatctcccc 565
              ||||||||||||||||||||
Sbjct: 124555 ttttcaaggtccatctcccc 124536

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>gb|BT000764.1| Arabidopsis thaliana clone RAFL09-39-L05 (R18723) putative
            PRLI-interacting factor L (At1g15730) mRNA, complete cds
          Length = 1568

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 341  cggttcaggttcctgccgatgaacacaatcttgttg 376
            |||||||  ||| |||||||||| ||||||||||||
Sbjct: 1353 cggttcaaattcttgccgatgaaaacaatcttgttg 1318

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>ref|XM_783215.1| PREDICTED: Strongylocentrotus purpuratus similar to F-box and
           leucine-rich repeat protein 5 (LOC583300), mRNA
          Length = 2835

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 302 ttcagcaggcagtccttgaa 321
           ||||||||||||||||||||
Sbjct: 689 ttcagcaggcagtccttgaa 670

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>emb|AL161553.2|ATCHRIV53 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 53
          Length = 197568

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     acatccaggcacagtagaca 68
              ||||||||||||||||||||
Sbjct: 134512 acatccaggcacagtagaca 134531

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>emb|AL080254.1|ATF21C20 Arabidopsis thaliana DNA chromosome 4, BAC clone F21C20 (ESSA project)
          Length = 69563

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 49    acatccaggcacagtagaca 68
             ||||||||||||||||||||
Sbjct: 39029 acatccaggcacagtagaca 39048

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>emb|CR762397.7| Zebrafish DNA sequence from clone DKEY-258A22 in linkage group 14,
             complete sequence
          Length = 107563

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    caaaacatctgacatccagg 57
             ||||||||||||||||||||
Sbjct: 62035 caaaacatctgacatccagg 62016

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>emb|BX539334.6| Zebrafish DNA sequence from clone DKEYP-4H2 in linkage group 14,
             complete sequence
          Length = 114428

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    caaaacatctgacatccagg 57
             ||||||||||||||||||||
Sbjct: 45529 caaaacatctgacatccagg 45548

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>emb|AL807239.5| Zebrafish DNA sequence from clone CH211-231H1 in linkage group 14
             Contains the 5' part of a novel gene similar to human,
             rodent and Oreochromis mossambicus GRIA3 (ionotropic
             glutamate receptor AMPA3) and five CpG islands, complete
             sequence
          Length = 210702

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    caaaacatctgacatccagg 57
             ||||||||||||||||||||
Sbjct: 76567 caaaacatctgacatccagg 76586

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>gb|AY093965.1| Arabidopsis thaliana At1g15730/F7H2_7 mRNA, complete cds
          Length = 1347

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 341  cggttcaggttcctgccgatgaacacaatcttgttg 376
            |||||||  ||| |||||||||| ||||||||||||
Sbjct: 1307 cggttcaaattcttgccgatgaaaacaatcttgttg 1272

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>gb|AC091899.2| Homo sapiens chromosome 5 clone RP11-158D20, complete sequence
          Length = 139253

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 40    aaacatctgacatccaggca 59
             ||||||||||||||||||||
Sbjct: 44330 aaacatctgacatccaggca 44349

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>ref|XM_927926.1| PREDICTED: Homo sapiens hypothetical protein LOC644830 (LOC644830),
            mRNA
          Length = 1365

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 546  ttttcaaggtccatctcccc 565
            ||||||||||||||||||||
Sbjct: 1154 ttttcaaggtccatctcccc 1135

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>gb|AY052312.1| Arabidopsis thaliana AT4g20760/F21C20_110 mRNA, complete cds
          Length = 1155

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 49  acatccaggcacagtagaca 68
           ||||||||||||||||||||
Sbjct: 751 acatccaggcacagtagaca 770

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>gb|AC026796.5| Homo sapiens chromosome 5 clone CTD-2292M14, complete sequence
          Length = 151019

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 40   aaacatctgacatccaggca 59
            ||||||||||||||||||||
Sbjct: 5073 aaacatctgacatccaggca 5054

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>gb|AF367261.1|AF367261 Arabidopsis thaliana At1g15730/F7H2_7 mRNA, complete cds
          Length = 1442

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 341  cggttcaggttcctgccgatgaacacaatcttgttg 376
            |||||||  ||| |||||||||| ||||||||||||
Sbjct: 1339 cggttcaaattcttgccgatgaaaacaatcttgttg 1304

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 357     cgatgaacacaatcttgttgatgc 380
               ||||||||||||||||| ||||||
Sbjct: 1009509 cgatgaacacaatcttgctgatgc 1009486

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>emb|BX814741.1|CNS0AARA Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB91ZH12 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1400

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 341  cggttcaggttcctgccgatgaacacaatcttgttg 376
            |||||||  ||| |||||||||| ||||||||||||
Sbjct: 1332 cggttcaaattcttgccgatgaaaacaatcttgttg 1297

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>emb|BX813505.1|CNS0AAQX Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB20ZH11 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1363

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                
Query: 341  cggttcaggttcctgccgatgaacacaatcttgttg 376
            |||||||  ||| |||||||||| ||||||||||||
Sbjct: 1293 cggttcaaattcttgccgatgaaaacaatcttgttg 1258

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>emb|BX842319.1|CNS0A2QW Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL54ZF07 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 863

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 49  acatccaggcacagtagaca 68
           ||||||||||||||||||||
Sbjct: 496 acatccaggcacagtagaca 515

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>gb|AC096591.1| Homo sapiens BAC clone RP11-768F19 from 2, complete sequence
          Length = 182435

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   acgcacgtaggagaaacgga 268
             ||||||||||||||||||||
Sbjct: 13993 acgcacgtaggagaaacgga 13974

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>gb|AC092138.4| Homo sapiens chromosome 16 clone RP11-351A20, complete sequence
          Length = 189505

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   ttctgcagccacaaagctca 214
             ||||||||||||||||||||
Sbjct: 13741 ttctgcagccacaaagctca 13760

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>gb|AC009062.8| Homo sapiens chromosome 16 clone RP11-298C15, complete sequence
          Length = 207345

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 195    ttctgcagccacaaagctca 214
              ||||||||||||||||||||
Sbjct: 181659 ttctgcagccacaaagctca 181678

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>gb|AF315736.1|AF315736 Arabidopsis thaliana PRLI-interacting factor L mRNA, partial cds
          Length = 875

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 341 cggttcaggttcctgccgatgaacacaatcttgttg 376
           |||||||  ||| |||||||||| ||||||||||||
Sbjct: 698 cggttcaaattcttgccgatgaaaacaatcttgttg 663

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>gb|AE004954.1| Pseudomonas aeruginosa PAO1, section 515 of 529 of the complete
            genome
          Length = 10058

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 312  agtccttgaagcccgtctccagctcttc 339
            ||||||||||||||| ||||||| ||||
Sbjct: 1786 agtccttgaagcccggctccagcgcttc 1759

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>gb|AE004671.1| Pseudomonas aeruginosa PAO1, section 232 of 529 of the complete
            genome
          Length = 10746

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 312  agtccttgaagcccgtctccagctcttc 339
            ||||||||||||||| ||||||| ||||
Sbjct: 9787 agtccttgaagcccggctccagcgcttc 9814

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>emb|BX001036.12| Zebrafish DNA sequence from clone CH211-155G22 in linkage group 1,
              complete sequence
          Length = 178860

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 539    gtcagccttttcaaggtccatctc 562
              ||||||| ||||||||||||||||
Sbjct: 118411 gtcagccatttcaaggtccatctc 118388

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>gb|AC034256.3|F7H2 Sequence of BAC F7H2 from Arabidopsis thaliana chromosome 1, complete
             sequence
          Length = 77521

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 341   cggttcaggttcctgccgatgaacacaatcttgttg 376
             |||||||  ||| |||||||||| ||||||||||||
Sbjct: 20148 cggttcaaattcttgccgatgaaaacaatcttgttg 20183

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>emb|BX248514.3| Zebrafish DNA sequence from clone CH211-237A6 in linkage group 1,
              complete sequence
          Length = 165693

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 148    cggttcgttcacggttttgg 167
              ||||||||||||||||||||
Sbjct: 138264 cggttcgttcacggttttgg 138283

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>dbj|AP002747.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0698G03
          Length = 147857

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 357    cgatgaacacaatcttgttgatgc 380
              ||||||||||||||||| ||||||
Sbjct: 144954 cgatgaacacaatcttgctgatgc 144931

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>dbj|AP002541.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0494A10
          Length = 145576

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 357   cgatgaacacaatcttgttgatgc 380
             ||||||||||||||||| ||||||
Sbjct: 47177 cgatgaacacaatcttgctgatgc 47154

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>dbj|AK104596.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-E02, full
           insert sequence
          Length = 1353

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 357 cgatgaacacaatcttgttgatgc 380
           ||||||||||||||||| ||||||
Sbjct: 246 cgatgaacacaatcttgctgatgc 223

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>dbj|AK104611.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-C11, full
           insert sequence
          Length = 1369

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 357 cgatgaacacaatcttgttgatgc 380
           ||||||||||||||||| ||||||
Sbjct: 249 cgatgaacacaatcttgctgatgc 226

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>emb|Z84815.1|HS2A2A Human DNA sequence from PAC 2A2 on chromosome X
          Length = 32671

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 207  aaagctcaaaatcatgaagc 226
            ||||||||||||||||||||
Sbjct: 7252 aaagctcaaaatcatgaagc 7233

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>dbj|AK061406.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-A04, full
           insert sequence
          Length = 1488

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 357 cgatgaacacaatcttgttgatgc 380
           ||||||||||||||||| ||||||
Sbjct: 243 cgatgaacacaatcttgctgatgc 220

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>dbj|AK061369.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-D10, full
           insert sequence
          Length = 1039

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 357 cgatgaacacaatcttgttgatgc 380
           ||||||||||||||||| ||||||
Sbjct: 251 cgatgaacacaatcttgctgatgc 228

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>gb|L36959.1|BLYCA Hordeum vulgare carbonic anhydrase mRNA, complete cds
          Length = 1529

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 503 atcactgcgtgccagcagta 522
           ||||||||||||||||||||
Sbjct: 62  atcactgcgtgccagcagta 43


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,410,557
Number of Sequences: 3902068
Number of extensions: 5410557
Number of successful extensions: 93405
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93212
Number of HSP's gapped (non-prelim): 191
length of query: 674
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 651
effective length of database: 17,143,297,704
effective search space: 11160286805304
effective search space used: 11160286805304
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result