ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags12a19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ASF1_YEAST (P32447) Anti-silencing protein 1 111 1e-24
2CIA1_SCHPO (O74515) Histone chaperone cia1 81 2e-15
3TBX19_MOUSE (Q99ME7) T-box transcription factor TBX19 (T-box pro... 34 0.37
4TBX19_CANFA (Q5XNS0) T-box transcription factor TBX19 (T-box pro... 33 0.48
5TBX19_HUMAN (O60806) T-box transcription factor TBX19 (T-box pro... 32 1.1
6TBXT_CHICK (P79778) T-box-containing protein TBXT 31 2.4

>ASF1_YEAST (P32447) Anti-silencing protein 1|
          Length = 279

 Score =  111 bits (278), Expect = 1e-24
 Identities = 50/81 (61%), Positives = 66/81 (81%)
 Frame = -3

Query: 562 RFVFQADPPDPLKIREEDIIGVTVLLLTCSYVGQEFMRVGYYVNNDYDDEQLREEPPAKL 383
           +FVF ADPP    I   +++ VTV+LL+CSY G+EF+RVGYYVNN+YD+E+LRE PPAK+
Sbjct: 71  KFVFSADPPSAELIPASELVSVTVILLSCSYDGREFVRVGYYVNNEYDEEELRENPPAKV 130

Query: 382 LLDRVQRNILADKPRVTKFPI 320
            +D + RNILA+KPRVT+F I
Sbjct: 131 QVDHIVRNILAEKPRVTRFNI 151



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>CIA1_SCHPO (O74515) Histone chaperone cia1|
          Length = 262

 Score = 81.3 bits (199), Expect = 2e-15
 Identities = 43/89 (48%), Positives = 63/89 (70%), Gaps = 6/89 (6%)
 Frame = -3

Query: 562 RFVFQADPPD-PLKIREEDIIGVTVLLLTCSYVGQEFMRVGYYVNNDYDDEQLREEPPA- 389
           +FVF+ADPP+  L  +  D++GVTV+LL+C+Y   EF+RVGYYVNN+ +   L+E   A 
Sbjct: 71  KFVFEADPPNIDLLPQLSDVLGVTVILLSCAYEDNEFVRVGYYVNNEMEGLNLQEMDDAE 130

Query: 388 ----KLLLDRVQRNILADKPRVTKFPINF 314
               K+ + +V R+ILA+KPRVT+F I +
Sbjct: 131 IKKVKVDISKVWRSILAEKPRVTRFNIQW 159



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>TBX19_MOUSE (Q99ME7) T-box transcription factor TBX19 (T-box protein 19) (T-box|
           factor, pituitary)
          Length = 446

 Score = 33.9 bits (76), Expect = 0.37
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -3

Query: 502 GVTVLLLTCSYVGQEFMRVGYYVNNDYDDEQLREEPPAKLLLDRVQRNILADKP 341
           G   +++ CS+   +F+ V  Y N +    +++  P AK  LD  +RN L D P
Sbjct: 174 GAHRMVMNCSFPETQFIAVTAYQNEEITALKIKYNPFAKAFLDAKERNHLKDVP 227



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>TBX19_CANFA (Q5XNS0) T-box transcription factor TBX19 (T-box protein 19)|
          Length = 445

 Score = 33.5 bits (75), Expect = 0.48
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = -3

Query: 502 GVTVLLLTCSYVGQEFMRVGYYVNNDYDDEQLREEPPAKLLLDRVQRNILADKP 341
           G   +++ CS+   +F+ V  Y N +    +++  P AK  LD  +RN L D P
Sbjct: 176 GAHRMVMNCSFPETQFIAVTAYQNEEITALKIKYNPFAKAFLDAKERNHLKDIP 229



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>TBX19_HUMAN (O60806) T-box transcription factor TBX19 (T-box protein 19) (T-box|
           factor, pituitary)
          Length = 448

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -3

Query: 490 LLLTCSYVGQEFMRVGYYVNNDYDDEQLREEPPAKLLLDRVQRNILADKP 341
           ++  CS+   +F+ V  Y N +    +++  P AK  LD  +RN L D P
Sbjct: 180 MVTNCSFPETQFIAVTAYQNEEITALKIKYNPFAKAFLDAKERNHLRDVP 229



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>TBXT_CHICK (P79778) T-box-containing protein TBXT|
          Length = 397

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -3

Query: 490 LLLTCSYVGQEFMRVGYYVNNDYDDEQLREEPPAKLLLDRVQRNILADKP 341
           +++ CS+   +F+ V  Y N +    +++  P AK  LD  +RN   D P
Sbjct: 178 MVMNCSFPETQFIAVTAYQNEEITALKIKYNPFAKAFLDAKERNHPKDAP 227


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,309,094
Number of Sequences: 219361
Number of extensions: 1379090
Number of successful extensions: 3471
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3469
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5253413348
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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